NO10G01450.1, NO10G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01450.1
Unique NameNO10G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr10:422031..422747 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:422031..422747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G01450.1 vs.
Match: EWM25345.1 (hypothetical protein Naga_100005g107 [Nannochloropsis gaditana])

HSP 1 Score: 338.6 bits (867), Expect = 1.600e-89
Identity = 179/241 (74.27%), Postives = 207/241 (85.89%), Query Frame = 0
Query:    2 LISLLSCSLVSGFLVP-SPASAV--SPLRASAAVMAATAEPVVEALAGKKPEYVLMEDASGRSINTTMLAFLKQDGKRYCLGTPVDSPMVLMDSGGRPIDPSDELAEKMFYQLDDYFTNKGYEILHTAGFLTIAGDPDWFDDDDVVD-EDDVDSDDEYDSEDEEEEDAGEVAAQAARSAAARGENSVRVDPICDVEFDGSMYRVVQLLDRVPLSAEEDGEGKWRLVSDSETHLGLEKMAKK 239
            L SL+SCSLV  FLVP +P       PLR S+AV+A+ +EPVVEALAG+KPEY+LMED  GRSINTTM+A+L+QDGKRYCLGTPVDSPMVLMDSGGRPIDPS  LAE MFYQLDDYFTNKGYEILHTAGFLTIAG+PDWFDD+++ + E++ DSDDEYDSE+E++E      AQ AR  AAR ++SVRVDPICDVE+DGSMYR+VQLLDRVPLSAEED EGKW LV+D++THLGLEK AKK
Sbjct:    6 LTSLVSCSLVQAFLVPVAPGMGRPREPLRPSSAVLASASEPVVEALAGRKPEYILMEDGHGRSINTTMIAYLRQDGKRYCLGTPVDSPMVLMDSGGRPIDPSSALAEGMFYQLDDYFTNKGYEILHTAGFLTIAGEPDWFDDEELEEGEEEEDSDDEYDSEEEDDEREEAATAQMARQEAARKDDSVRVDPICDVEYDGSMYRIVQLLDRVPLSAEEDAEGKWVLVNDADTHLGLEKRAKK 246          
The following BLAST results are available for this feature:
BLAST of NO10G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25345.11.600e-8974.27hypothetical protein Naga_100005g107 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01450NO10G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01450.1NO10G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01450.1.cds1NO10G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01450.1 ID=NO10G01450.1|Name=NO10G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGTTGATCAGTTTGCTGTCCTGCAGCCTCGTCAGTGGTTTCCTGGTCCC
GTCCCCTGCCAGTGCCGTATCGCCCCTCCGTGCCTCGGCTGCAGTCATGG
CTGCGACAGCCGAGCCCGTGGTTGAGGCCTTGGCAGGAAAGAAGCCCGAG
TACGTCTTGATGGAAGATGCATCAGGACGGAGCATCAATACAACGATGCT
GGCATTCCTTAAGCAGGACGGTAAGCGGTACTGCTTGGGGACGCCGGTGG
ATAGCCCGATGGTTTTGATGGACTCGGGGGGGCGGCCCATTGACCCTTCG
GATGAATTAGCGGAGAAGATGTTTTACCAGCTGGACGATTATTTTACGAA
TAAGGGTTATGAAATTCTCCATACTGCGGGATTTTTGACCATCGCGGGGG
ATCCGGATTGGTTCGATGATGATGATGTGGTGGACGAGGATGATGTTGAC
AGTGACGACGAATACGACAGCGAGGACGAGGAAGAAGAGGACGCTGGGGA
GGTAGCTGCACAGGCGGCCCGGTCCGCGGCTGCAAGGGGGGAGAACAGTG
TGAGGGTTGATCCAATTTGTGACGTCGAGTTTGATGGGTCGATGTATCGG
GTTGTGCAGTTATTGGACCGGGTGCCTCTGAGCGCGGAGGAGGACGGGGA
GGGAAAGTGGCGATTGGTGAGTGACTCCGAGACACATTTGGGTTTGGAAA
AGATGGCAAAGAAGTAA
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protein sequence of NO10G01450.1

>NO10G01450.1-protein ID=NO10G01450.1-protein|Name=NO10G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MLISLLSCSLVSGFLVPSPASAVSPLRASAAVMAATAEPVVEALAGKKPE
YVLMEDASGRSINTTMLAFLKQDGKRYCLGTPVDSPMVLMDSGGRPIDPS
DELAEKMFYQLDDYFTNKGYEILHTAGFLTIAGDPDWFDDDDVVDEDDVD
SDDEYDSEDEEEEDAGEVAAQAARSAAARGENSVRVDPICDVEFDGSMYR
VVQLLDRVPLSAEEDGEGKWRLVSDSETHLGLEKMAKK*
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mRNA from alignment at chr10:422031..422747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01450.1 ID=NO10G01450.1|Name=NO10G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp|location=Sequence derived from alignment at chr10:422031..422747- (Nannochloropsis oceanica)
ATGTTGATCAGTTTGCTGTCCTGCAGCCTCGTCAGTGGTTTCCTGGTCCC GTCCCCTGCCAGTGCCGTATCGCCCCTCCGTGCCTCGGCTGCAGTCATGG CTGCGACAGCCGAGCCCGTGGTTGAGGCCTTGGCAGGAAAGAAGCCCGAG TACGTCTTGATGGAAGATGCATCAGGACGGAGCATCAATACAACGATGCT GGCATTCCTTAAGCAGGACGGTAAGCGGTACTGCTTGGGGACGCCGGTGG ATAGCCCGATGGTTTTGATGGACTCGGGGGGGCGGCCCATTGACCCTTCG GATGAATTAGCGGAGAAGATGTTTTACCAGCTGGACGATTATTTTACGAA TAAGGGTTATGAAATTCTCCATACTGCGGGATTTTTGACCATCGCGGGGG ATCCGGATTGGTTCGATGATGATGATGTGGTGGACGAGGATGATGTTGAC AGTGACGACGAATACGACAGCGAGGACGAGGAAGAAGAGGACGCTGGGGA GGTAGCTGCACAGGCGGCCCGGTCCGCGGCTGCAAGGGGGGAGAACAGTG TGAGGGTTGATCCAATTTGTGACGTCGAGTTTGATGGGTCGATGTATCGG GTTGTGCAGTTATTGGACCGGGTGCCTCTGAGCGCGGAGGAGGACGGGGA GGGAAAGTGGCGATTGGTGAGTGACTCCGAGACACATTTGGGTTTGGAAA AGATGGCAAAGAAGTAA
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Coding sequence (CDS) from alignment at chr10:422031..422747-

>NO10G01450.1 ID=NO10G01450.1|Name=NO10G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr10:422031..422747- (Nannochloropsis oceanica)
ATGTTGATCAGTTTGCTGTCCTGCAGCCTCGTCAGTGGTTTCCTGGTCCC
GTCCCCTGCCAGTGCCGTATCGCCCCTCCGTGCCTCGGCTGCAGTCATGG
CTGCGACAGCCGAGCCCGTGGTTGAGGCCTTGGCAGGAAAGAAGCCCGAG
TACGTCTTGATGGAAGATGCATCAGGACGGAGCATCAATACAACGATGCT
GGCATTCCTTAAGCAGGACGGTAAGCGGTACTGCTTGGGGACGCCGGTGG
ATAGCCCGATGGTTTTGATGGACTCGGGGGGGCGGCCCATTGACCCTTCG
GATGAATTAGCGGAGAAGATGTTTTACCAGCTGGACGATTATTTTACGAA
TAAGGGTTATGAAATTCTCCATACTGCGGGATTTTTGACCATCGCGGGGG
ATCCGGATTGGTTCGATGATGATGATGTGGTGGACGAGGATGATGTTGAC
AGTGACGACGAATACGACAGCGAGGACGAGGAAGAAGAGGACGCTGGGGA
GGTAGCTGCACAGGCGGCCCGGTCCGCGGCTGCAAGGGGGGAGAACAGTG
TGAGGGTTGATCCAATTTGTGACGTCGAGTTTGATGGGTCGATGTATCGG
GTTGTGCAGTTATTGGACCGGGTGCCTCTGAGCGCGGAGGAGGACGGGGA
GGGAAAGTGGCGATTGGTGAGTGACTCCGAGACACATTTGGGTTTGGAAA
AGATGGCAAAGAAGTAA
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Synonyms
Publications