NO10G01330, NO10G01330 (gene) Nannochloropsis oceanica

Overview
NameNO10G01330
Unique NameNO10G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1466
Alignment locationchr10:392129..393594 -

Link to JBrowse

Properties
Property NameValue
DescriptionEndonuclease iii
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:392129..393594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0090305nucleic acid phosphodiester bond hydrolysis
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004519endonuclease activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR011257DNA_glycosylase
IPR001876Znf_RanBP2
Homology
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BLAST of NO10G01330 vs. NCBI_GenBank
Match: EWM25451.1 (endonuclease iii [Nannochloropsis gaditana])

HSP 1 Score: 164.5 bits (415), Expect = 7.500e-37
Identity = 99/187 (52.94%), Postives = 124/187 (66.31%), Query Frame = 0 
Query:  193 AKRTGTGNSGIQARGGEGGGEE--VKADTGKNVINQTRAKEVGGKEMEAVTPGTDSIADYNP---------SNLNRFRLLVAVILSSRTQEQIVRRSIQTIEQCYPGRQFSPHFFASSIESWETLSEKLSFVHCNKVKSRHILQTANVIEKEFGGHVPKRKEQLLKMAGIGPTLAPLLEFLFAWLDK 369
            A+  G    G ++ G   GGE    +    +  +    AK++ G   EAV   ++S A   P         +NL RFRLLVAVILSSRTQEQIVR++++TI + YPG +FSP  FA ++ S E LSEKLSFVHCNKVKS+HILQ+A  I+ EFGG VP R+E LL+MAGIGPTLAPLLEFLF  LD+
Sbjct:   24 ARGRGAEECGKESEGAAWGGERGAARYHRREGGVATGGAKDLTGSVAEAVGEASESEAGMGPGSTLLGADAANLQRFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFA-ALPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTRLDE 209
The following BLAST results are available for this feature:
BLAST of NO10G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25451.17.500e-3752.94endonuclease iii [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001001NSK001001Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01330.1NO10G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586452gene_4083Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g119gene5142Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01330.1NO10G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01330 ID=NO10G01330|Name=NO10G01330|organism=Nannochloropsis oceanica|type=gene|length=1466bp
AAAACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGTGCGCCGC
CTGTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATCTGTGCCT
CAGGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTCCCCACCT
TCGGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGAAGGCATT
CAGCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAACGGCGATA
CTGGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAACCCTTTT
TCTTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTACGATCTC
CTCCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAAATAGCTA
AGCGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGGCGCCGGT
GAGGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCAAAAGAAA
CCAACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAGGAAAGCG
AAGACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATTGGGGCCT
TTGGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGCGAGGTGG
TGAAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAATGTCATAA
ACCAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGCAGTTACC
CCCGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTAACCGCTT
TCGCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAGCAAATCG
TGCGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCGACAATTC
TCCCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCCTTTCTGA
AAAGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCACATCCTAC
AAACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCCTAAGAGG
AAGGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAGCTCCGTT
GCTGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAGGACGAGG
AGGATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGGAGAAGCG
CAAGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCATGCCATC
GGCGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAAGACGGTG
AGATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACTTGTACAG
CGAAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATGCAGTCGA
CGAAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAGAATGTAA
ATACCTATGCAGGCAC
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protein sequence of NO10G01330.1

>NO10G01330.1-protein ID=NO10G01330.1-protein|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MKSWTCAACTYTNERESAFCQICASGRPSVSHAPIDLRSPPSAEGKKADN
ANTNKKAFSIAASRAERQQDDNGDTGIETQPAEERRASNPFSSFVYNGDD
GEDDTTISSATVRAFAFMHPPQIAKRPLSKLLSDGCGGGAGEDGAGDEVA
PKKKTKRNQHACGEGAPEDFEKESEDTKNATVLKWRRILGPLAKRTGTGN
SGIQARGGEGGGEEVKADTGKNVINQTRAKEVGGKEMEAVTPGTDSIADY
NPSNLNRFRLLVAVILSSRTQEQIVRRSIQTIEQCYPGRQFSPHFFASSI
ESWETLSEKLSFVHCNKVKSRHILQTANVIEKEFGGHVPKRKEQLLKMAG
IGPTLAPLLEFLFAWLDKEEREDEEDGKEGGRKQETQEGEAQVPQGQQYQ
QEQQPMPSAFRGHGGDVKLENEDGEIIIVG*
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Synonyms
Publications