NO10G01330.1, NO10G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01330.1
Unique NameNO10G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1466
Alignment locationchr10:392129..393594 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:392129..393594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01330.1 vs.
Match: EWM25451.1 (endonuclease iii [Nannochloropsis gaditana])

HSP 1 Score: 165.6 bits (418), Expect = 3.300e-37
Identity = 100/190 (52.63%), Postives = 126/190 (66.32%), Query Frame = 0 
Query:  193 AKRTGTGNSGIQARGGEGGGEEVKADTGKNV--INQTRAKEVGGKEMEAVTPGTDSIADYNP---------SNLNRFRLLVAVILSSRTQEQIVRRSIQTIEQCYPGRQFSPHFFASSIESWETLSEKLSFVHCNKVKSRHILQTANVIEKEFGGHVPKRKEQLLKMAGIGPTLAPLLEFLFAWLDKEER 372
            A+  G    G ++ G   GGE   A   +    +    AK++ G   EAV   ++S A   P         +NL RFRLLVAVILSSRTQEQIVR++++TI + YPG +FSP  FA+ + S E LSEKLSFVHCNKVKS+HILQ+A  I+ EFGG VP R+E LL+MAGIGPTLAPLLEFLF  LD+ ++
Sbjct:   24 ARGRGAEECGKESEGAAWGGERGAARYHRREGGVATGGAKDLTGSVAEAVGEASESEAGMGPGSTLLGADAANLQRFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAA-LPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTRLDEGDK 212
The following BLAST results are available for this feature:
BLAST of NO10G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25451.13.300e-3752.63endonuclease iii [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01330NO10G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01330.1NO10G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01330.1.cds1NO10G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01330.1 ID=NO10G01330.1|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp
AAAACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGTGCGCCGC
CTGTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATCTGTGCCT
CAGGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTCCCCACCT
TCGGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGAAGGCATT
CAGCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAACGGCGATA
CTGGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAACCCTTTT
TCTTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTACGATCTC
CTCCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAAATAGCTA
AGCGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGGCGCCGGT
GAGGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCAAAAGAAA
CCAACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAGGAAAGCG
AAGACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATTGGGGCCT
TTGGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGCGAGGTGG
TGAAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAATGTCATAA
ACCAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGCAGTTACC
CCCGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTAACCGCTT
TCGCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAGCAAATCG
TGCGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCGACAATTC
TCCCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCCTTTCTGA
AAAGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCACATCCTAC
AAACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCCTAAGAGG
AAGGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAGCTCCGTT
GCTGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAGGACGAGG
AGGATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGGAGAAGCG
CAAGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCATGCCATC
GGCGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAAGACGGTG
AGATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACTTGTACAG
CGAAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATGCAGTCGA
CGAAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAGAATGTAA
ATACCTATGCAGGCAC
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protein sequence of NO10G01330.1

>NO10G01330.1-protein ID=NO10G01330.1-protein|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MKSWTCAACTYTNERESAFCQICASGRPSVSHAPIDLRSPPSAEGKKADN
ANTNKKAFSIAASRAERQQDDNGDTGIETQPAEERRASNPFSSFVYNGDD
GEDDTTISSATVRAFAFMHPPQIAKRPLSKLLSDGCGGGAGEDGAGDEVA
PKKKTKRNQHACGEGAPEDFEKESEDTKNATVLKWRRILGPLAKRTGTGN
SGIQARGGEGGGEEVKADTGKNVINQTRAKEVGGKEMEAVTPGTDSIADY
NPSNLNRFRLLVAVILSSRTQEQIVRRSIQTIEQCYPGRQFSPHFFASSI
ESWETLSEKLSFVHCNKVKSRHILQTANVIEKEFGGHVPKRKEQLLKMAG
IGPTLAPLLEFLFAWLDKEEREDEEDGKEGGRKQETQEGEAQVPQGQQYQ
QEQQPMPSAFRGHGGDVKLENEDGEIIIVG*
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mRNA from alignment at chr10:392129..393594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01330.1 ID=NO10G01330.1|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp|location=Sequence derived from alignment at chr10:392129..393594- (Nannochloropsis oceanica)
AAAACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGTGCGCCGC
CTGTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATCTGTGCCT
CAGGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTCCCCACCT
TCGGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGAAGGCATT
CAGCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAACGGCGATA
CTGGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAACCCTTTT
TCTTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTACGATCTC
CTCCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAAATAGCTA
AGCGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGGCGCCGGT
GAGGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCAAAAGAAA
CCAACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAGGAAAGCG
AAGACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATTGGGGCCT
TTGGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGCGAGGTGG
TGAAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAATGTCATAA
ACCAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGCAGTTACC
CCCGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTAACCGCTT
TCGCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAGCAAATCG
TGCGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCGACAATTC
TCCCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCCTTTCTGA
AAAGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCACATCCTAC
AAACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCCTAAGAGG
AAGGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAGCTCCGTT
GCTGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAGGACGAGG
AGGATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGGAGAAGCG
CAAGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCATGCCATC
GGCGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAAGACGGTG
AGATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACTTGTACAG
CGAAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATGCAGTCGA
CGAAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAGAATGTAA
ATACCTATGCAGGCAC
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Coding sequence (CDS) from alignment at chr10:392129..393594-

>NO10G01330.1 ID=NO10G01330.1|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr10:392129..393594- (Nannochloropsis oceanica)
ATGAAATCGTGGACGTGCGCCGCCTGTACCTACACCAATGAGCGCGAATC
CGCTTTTTGTCAAATCTGTGCCTCAGGCCGCCCCAGCGTCTCGCATGCTC
CCATCGATTTGCGCTCCCCACCTTCGGCCGAAGGCAAGAAGGCAGACAAC
GCCAATACCAACAAGAAGGCATTCAGCATAGCAGCCTCGCGAGCAGAACG
GCAACAGGACGATAACGGCGATACTGGGATCGAAACTCAACCGGCAGAAG
AGAGGCGTGCCAGCAACCCTTTTTCTTCCTTCGTCTACAACGGTGATGAC
GGCGAGGACGACACTACGATCTCCTCCGCCACGGTCCGGGCCTTTGCGTT
CATGCACCCGCCGCAAATAGCTAAGCGACCTTTGAGCAAGCTGCTGAGCG
ACGGTTGTGGCGGCGGCGCCGGTGAGGATGGGGCAGGGGACGAGGTCGCG
CCGAAAAAGAAGACCAAAAGAAACCAACACGCATGCGGTGAGGGGGCTCC
TGAGGACTTTGAAAAGGAAAGCGAAGACACCAAAAATGCGACTGTGCTAA
AATGGAGGCGAATATTGGGGCCTTTGGCCAAGCGAACGGGGACTGGAAAC
AGCGGTATTCAAGCGCGAGGTGGTGAAGGAGGAGGAGAGGAAGTGAAGGC
GGACACCGGCAAGAATGTCATAAACCAGACAAGAGCAAAAGAAGTAGGAG
GAAAAGAAATGGAAGCAGTTACCCCCGGAACTGACTCTATCGCTGACTAT
AATCCTAGCAATCTTAACCGCTTTCGCCTACTCGTCGCCGTCATTCTCTC
ATCGCGCACTCAAGAGCAAATCGTGCGCCGATCCATCCAAACCATCGAGC
AGTGCTACCCTGGCCGACAATTCTCCCCCCACTTTTTTGCCTCTTCCATT
GAGTCCTGGGAGACCCTTTCTGAAAAGTTGTCATTCGTACATTGCAATAA
AGTCAAAAGCCGGCACATCCTACAAACAGCCAATGTAATCGAGAAGGAAT
TTGGGGGCCATGTCCCTAAGAGGAAGGAGCAGCTGTTAAAAATGGCAGGG
ATTGGACCGACCCTAGCTCCGTTGCTGGAATTTTTGTTTGCGTGGCTTGA
CAAAGAAGAGAGAGAGGACGAGGAGGATGGGAAAGAGGGAGGGAGGAAGC
AGGAAACGCAGGAGGGAGAAGCGCAAGTACCTCAGGGGCAGCAATATCAG
CAGGAGCAGCAGCCCATGCCATCGGCGTTTCGAGGACATGGAGGAGACGT
AAAATTGGAGAATGAAGACGGTGAGATCATAATCGTGGGATAG
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Synonyms
Publications