NO10G01190, NO10G01190 (gene) Nannochloropsis oceanica

Overview
NameNO10G01190
Unique NameNO10G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2760
Alignment locationchr10:352456..355215 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:352456..355215 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR004087KH_dom
Vocabulary: Biological Process
TermDefinition
GO:0070286axonemal dynein complex assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005858axonemal dynein complex
Homology
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BLAST of NO10G01190 vs. NCBI_GenBank
Match: KOO33046.1 (coiled-coil domain-containing protein 65-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.9 bits (198), Expect = 2.300e-11
Identity = 81/265 (30.57%), Postives = 126/265 (47.55%), Query Frame = 0 
Query:  516 TNTHAYELNN--ILTQTRERSNVLSIILETLEGDAVQDGGKKSSGSKSGKVLVITAMSTEEAHRAKTLLELHLKNQQELLRTERRLQQVQNKFLVVEEEVAAGLRIEFGIRKELGRVVVGKKGERVKRVLAETGVSSINVGDDG-MIRVVGPTVAAVMKARELLELVQEDVQVPLEAVAWFSCAVLDNLK---KKSGCVILRTDKVGTYVQQXXXXXXSESRKVTVVRIVGTHKQVEIARLLVDTQIEYGGRHQALRSSKEQMLQ 775
            T  HAY + N  ++   RE++ +L+I ++           KKS   K    L+ TA S       K L+ELH+K+ +E+ R     + + +K    + +   G+RIEF + KEL  +VVGK G+ +      +GV  + V   G  I V+GPT  +V KARELLE V E + V  E V W       N K   +K+    +  DK G              R+ +V+ IVGT + V  A L + T ++Y   +Q     ++++ Q
Sbjct:  146 TKVHAYFVANEALILSVREKAQLLAIHVD-----------KKSPQLK----LIGTAQS---IFTGKMLIELHMKHHEEMSRMHSGRELLASKLESEKAKRDTGVRIEFPVEKELIGLVVGKNGKNIAEARRVSGVDVVEVDQHGPKIVVIGPTQESVEKARELLEYVTERMDVRDEQVGWLIGKAGRNFKEMQEKTKITRINVDKGG------------NGRQPSVI-IVGTARSVAAASLYMTTHLDYFEEYQKEEDEEKRLRQ 379
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BLAST of NO10G01190 vs. NCBI_GenBank
Match: GBG23865.1 (Fragile X mental retardation syndrome-related protein 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 80.9 bits (198), Expect = 2.300e-11
Identity = 69/240 (28.75%), Postives = 122/240 (50.83%), Query Frame = 0 
Query:  567 ITAMSTEEAHRAKTLLELHLKNQQELLRTERRLQQVQNKFLVVEEEVAAGLRIEFGIRKELGRVVVGKKGERVKRVLAETGVSSINV-GDDGMIRVVGPTVAAVMKARELLELVQEDVQVPLE-----AVAWFSCAVLDNLKKKSGCVILRTDKVGTYVQQXXXXXXSESRKVTVVRIVGTHKQVEIARLLVDTQIEYGGRHQALRSSKEQMLQMLNHAGASYSNKSGSRRLQLEQQKLR 801
            I+A S +    A++LLE HL  Q E  + +++ ++++        E   G R+EF + + L  +V+GK G RV +V  +TGV  I V     ++R+ G    AV +AR++LE   E++ +PL+      +       +  + +KSGCV +  +                  K   +RIVGT K V++A+ LV+TQ+EY  +  +LR ++  + + L+   A+Y + +G    +  QQ+ R
Sbjct:   58 ISAASADCLRAARSLLETHLSFQIEYQQRKQQTEKMEEDLRATNAEFETGQRVEFSVPENLIGLVIGKGGARVTKVKEDTGVERIIVDARTRVVRIRGRDPEAVRRARDMLE--YEEIALPLQPGQPRTIIGERGRNIAEIMRKSGCVNIMVE------------------KDRFLRIVGTKKAVQLAQDLVETQLEYEQKMSSLRVNEANIQRQLSAIDANYRDFAGHNGPRPRQQQRR 277
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BLAST of NO10G01190 vs. NCBI_GenBank
Match: CEO97373.1 (hypothetical protein PBRA_000718 [Plasmodiophora brassicae])

HSP 1 Score: 65.9 bits (159), Expect = 7.700e-7
Identity = 55/216 (25.46%), Postives = 100/216 (46.30%), Query Frame = 0 
Query:  567 ITAMSTEEA-HRAKTLLELHLKNQQELLRTERRLQQVQNKFLVVEEEVAAGLRIEFGIRKELGRVVVGKKGERVKRVLAETGVSSINV-GDDGMIRVVGPTVAAVMKARELLELVQEDVQVPLEAVAWFSCAVLDNLKKKSGCVILRTDKVGTYVQQXXXXXXSESRKVT--VVRIVGTHKQVEIARLLVDTQIEYGGRHQALRSSKEQMLQMLNH 779
            I  + TE   ++AK L++LH+++  EL     + +Q + +    +E+V  G   EF +        +G KG RV+RV    G+ ++ +  + G IR++  +  A   AR  LE +QE +Q+  +AVAW                     K G  +Q       +   KV    V I GT   V  A++L+++ + Y  + +  +  +E++ + L+H
Sbjct:  173 IIVVGTETCLNKAKLLIDLHVQHLTELQVIRNKTEQYRAELAKAQEKVTTGHVEEFTVDLSTIGYAIGAKGSRVQRVQQMPGIMNVQIDAETGKIRILAESPQAAAAARHELEFLQESIQLTPDAVAWV------------------IGKNGRVIQHIEASSKANRIKVQDGTVTIFGTRDSVSNAKMLIESHLAYRSQFEKYQREQEEVQKQLHH 370
The following BLAST results are available for this feature:
BLAST of NO10G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
KOO33046.12.300e-1130.57coiled-coil domain-containing protein 65-like prot... [more]
GBG23865.12.300e-1128.75Fragile X mental retardation syndrome-related prot... [more]
CEO97373.17.700e-725.46hypothetical protein PBRA_000718 [Plasmodiophora b... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01190.1NO10G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586537gene_4098Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01190.1NO10G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01190 ID=NO10G01190|Name=NO10G01190|organism=Nannochloropsis oceanica|type=gene|length=2760bp
ATGACTGTATCGCCCTCCACACTCGCTGTGGCTTCGAGCCCTGAGGCAGC
GGGTGTGCCACGCCCCGATGACGACGAGCCGTCCCTTCCCCAGGAGACAT
CAAAAACACCTCTGTCGAACTCCACTTCAGACATTCCCAGGCCTTTGATA
GCCACAGTTGTGGCTGCTGCTGCCGAAGAAGCCAGCCACGGGAGTGATGA
CACATCTACCGCCAGTGTCGCCGTCGATGCGCCCACGCCTCTGTCCCCCC
TCTCGCCGTCCGCAGCCGCTTGGGGCAGGCCCCTTCAACCCTTGCCTGCT
CAAGTGAAGGTGAACGTCAACCCTGCCCTGACCACGCAACTCCAAAACAT
GGCTCTTGTTAGTAACACGAGCTCGAAGTCAGCCAAGGGACAAAAGGGGC
GGGAGTCCCCGGGAGATACTCCAACGTCTAGCACCCCCAAGGACAAGGAC
ACGTCGAAGCCGCACGAGCAGCAGGAGCAACAGGGTACCGCGTCTCCCAC
CGTACCGGCACCCGCTGCTGTTATGGCCCAGTCCTCTCCCGACAATGAAA
CCAAGAAGAGTCAGGCCATGGACGAGAGCAAGAGCACCCTTAAAGCGATG
GATTTACCCGCTGTGGTGGTGGAGGAGGAAGAAGCAGGGAAGGAAGAAAA
GGAGATCTCGACTCTCAAGTCAGCGACGATGCAAAGAGATCAGCATGACG
CGGCGACAAAAAAAGAAGGAACCAACAGGAGGGAGTTGATGGATAAAAAG
GTCCCCGGAGATGAATCGCCTTCCCCGCCGGCGCAACAACCACCCATACA
AGCCCAGCAGTGTAAGCAGGAGCAGGAGCATCTGAAAAAGCAGGAGTCTG
CCGCTTCAGAACAAGCCTTTCCTGTCGTCGTGGAAAGAGGAGCTACCAAG
CAAGCACAGCAGCAGCAGCAGCAGCAAAAACAGAAACATGAAGAAATTGA
AATGACTGTGTCGATGAACGCTCCATCCGCCGCAGTCATGGTGCAACAGC
CCTGGGAAGCAACGAAACAGAAGCGGCAGAAGCGAAGGAGCCAGGGAAAG
CAGGAGTTTGACAATCTGGAACAAATCCCTACTCCTTCCTTGGAAGGAGG
GCCTTCTAAGCAAGTACAGCAGCAGCAGCCTAACGCACTTGTGCAGCATC
AGCACCATCACCATAACGGGCAGCAACATGAGGAGAAGGGAGGGACCGAA
TCGCAGCAGCCCCTTTTGACTGCCGGAGAAAGGCACCCGCCCACACAACA
TCAGCAGCCACAGCAACAAGAGAGAGAATCAATTGCAATGCAGTATATCG
GCTCTACTGCTGGGCAACGGCAGCAAGAACGACAAGGCAAGGAGCAACAA
AATCAGCTGCCACCTGCTCCAGCGCCTTCATCGACCTCCCTCCCTCGCAA
CCCTGTCCCCGGCCTCACTATTGCGCTAGCTCATCATCCTTCCGCTCCTT
TAGTCGAGCGAGTCCGAACGCATCTTGCAGCACTGGAGCGGAGCGGCACC
GTGGTTATGGAGTGTCTGCCTGTCCCTCTGGCCCTTGCCGAGTGGACAAA
CACGCACGCCTATGAGCTCAACAATATTCTGACTCAGACTAGGGAGAGAA
GTAATGTTCTGTCCATTATTTTGGAGACGCTAGAAGGAGATGCAGTACAG
GATGGAGGAAAAAAATCCTCAGGCTCGAAGTCGGGGAAGGTGCTTGTGAT
TACAGCCATGTCGACAGAGGAAGCGCATAGGGCCAAGACGTTGCTTGAGT
TGCATTTGAAAAACCAACAGGAGCTCCTTAGGACCGAACGACGGTTACAA
CAAGTACAGAATAAATTCTTGGTGGTGGAGGAAGAGGTGGCTGCGGGGTT
GCGAATAGAGTTTGGGATTCGGAAGGAGTTGGGAAGGGTTGTAGTGGGGA
AGAAGGGGGAGCGTGTCAAAAGAGTGTTAGCTGAGACGGGCGTCTCGTCG
ATCAACGTTGGAGATGATGGCATGATTCGGGTTGTGGGACCGACAGTCGC
GGCGGTGATGAAAGCGAGGGAGCTGCTGGAATTGGTACAAGAGGATGTAC
AGGTGCCGCTTGAGGCGGTGGCATGGTTTTCCTGCGCTGTACTTGACAAT
TTGAAGAAAAAGTCGGGCTGTGTCATACTACGGACTGATAAGGTTGGTAC
TTACGTGCAGCAGCAGCAGCAGCAGGAGGCTTCGGAGAGTCGAAAAGTGA
CCGTAGTGCGAATTGTGGGCACGCATAAGCAAGTGGAAATTGCCCGCCTT
CTTGTAGACACCCAGATTGAGTACGGGGGCCGGCACCAGGCCTTACGCTC
TTCCAAGGAGCAGATGCTGCAGATGTTAAACCATGCTGGCGCCTCTTACA
GCAACAAAAGTGGTTCCCGACGCCTCCAGCTAGAGCAGCAGAAACTCCGC
CCCCAGCAGCAGCCACGGTTTCAAACCGATGCTCTCTTGCACGCTGGTAG
TGGAAAGGGCCGTAGTATTGCGCATAGAGGTGGCGGTGGAGAGAAAGCGG
CCGAGACTCTGGGAGTGCGACCGCAGAAACAGCAGCAGCAGCAGCAGCAA
CGTAAGCCGTTGTCGGCGTTTGAAGCAGCGAGCGTCCAGGAAAGCAGCAG
CAGCGACATGCTCCCAAGCGCGTCGAGGACCAGGGGCCGTGGCAAGGCTG
CCCGCATCAGCAGTAAAAATGGCGGCGCCAGTGGCGATGATGCTACAAGC
GCAAGCGCTGCAATGGCACCGTCGCTGCCTGCAAAAAACGAGGACAACCG
CACCAAATAA
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protein sequence of NO10G01190.1

>NO10G01190.1-protein ID=NO10G01190.1-protein|Name=NO10G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=920bp
MTVSPSTLAVASSPEAAGVPRPDDDEPSLPQETSKTPLSNSTSDIPRPLI
ATVVAAAAEEASHGSDDTSTASVAVDAPTPLSPLSPSAAAWGRPLQPLPA
QVKVNVNPALTTQLQNMALVSNTSSKSAKGQKGRESPGDTPTSSTPKDKD
TSKPHEQQEQQGTASPTVPAPAAVMAQSSPDNETKKSQAMDESKSTLKAM
DLPAVVVEEEEAGKEEKEISTLKSATMQRDQHDAATKKEGTNRRELMDKK
VPGDESPSPPAQQPPIQAQQCKQEQEHLKKQESAASEQAFPVVVERGATK
QAQQQQQQQKQKHEEIEMTVSMNAPSAAVMVQQPWEATKQKRQKRRSQGK
QEFDNLEQIPTPSLEGGPSKQVQQQQPNALVQHQHHHHNGQQHEEKGGTE
SQQPLLTAGERHPPTQHQQPQQQERESIAMQYIGSTAGQRQQERQGKEQQ
NQLPPAPAPSSTSLPRNPVPGLTIALAHHPSAPLVERVRTHLAALERSGT
VVMECLPVPLALAEWTNTHAYELNNILTQTRERSNVLSIILETLEGDAVQ
DGGKKSSGSKSGKVLVITAMSTEEAHRAKTLLELHLKNQQELLRTERRLQ
QVQNKFLVVEEEVAAGLRIEFGIRKELGRVVVGKKGERVKRVLAETGVSS
INVGDDGMIRVVGPTVAAVMKARELLELVQEDVQVPLEAVAWFSCAVLDN
LKKKSGCVILRTDKVGTYVQQQQQQEASESRKVTVVRIVGTHKQVEIARL
LVDTQIEYGGRHQALRSSKEQMLQMLNHAGASYSNKSGSRRLQLEQQKLR
PQQQPRFQTDALLHAGSGKGRSIAHRGGGGEKAAETLGVRPQKQQQQQQQ
RKPLSAFEAASVQESSSSDMLPSASRTRGRGKAARISSKNGGASGDDATS
ASAAMAPSLPAKNEDNRTK*
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Synonyms
Publications