NO10G01120, NO10G01120 (gene) Nannochloropsis oceanica

Overview
NameNO10G01120
Unique NameNO10G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1482
Alignment locationchr10:337903..339384 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:337903..339384 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019387Uncharacterised_SAYSvFN
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO10G01120 vs. NCBI_GenBank
Match: EWM25444.1 (putative domain SAYSvFN [Nannochloropsis gaditana])

HSP 1 Score: 180.6 bits (457), Expect = 6.100e-42
Identity = 95/174 (54.60%), Postives = 122/174 (70.11%), Query Frame = 0 
Query:   10 PRRPPHPQPPGQVQSQNPTKWYTLACTIAFELRPFTPPTRRDLHSFVHSTRQTLSLICAETYHFIRFVS-PLVRRVGRNLTSWRYLLPLTAFSSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEG--KISPWSVFNRGMATMMGAINPEQFEAEIRNYQLVGEGALG 181
            P R     P     S   ++WY  AC +A+ELRPFTPPT  DL  ++ S+RQ    IC E   F + V+ PL+ RV   L SWRY +PLTAF++AFYLAV AEFG+VFLI+++L LI TVGLGDDA+   +   ++SPWSVFNRGM TMMG INPEQF+AE+R+Y++ GEG+ G
Sbjct:    3 PARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHG 176
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BLAST of NO10G01120 vs. NCBI_GenBank
Match: CBJ25622.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7
Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = 0 
Query:   29 KWYTLACTIAFELRPFTPPTRRDLHSFVHSTRQTLSLICAETYHFIRFVSPLVRRVGRNLTSWRYLLPLTAFSSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEGKISPWSVFNRGMATMMGAINPEQFEAEI 169
            KW+++   IAFEL+PF+ P+  D+ +   + R  +  +  E       V+P      + +   R  L L A+   + L +  EFG V+ II+++++I  + LG+     GE + S +SVFN G   ++G IN EQFE EI
Sbjct:   15 KWWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVR----VTPEAVGAVKAVNPLR-ALGLLAWLCGWALFIWLEFGAVYFIISSMAMIF-MNLGE----RGESEWSAYSVFNAGCRALLGTINAEQFEREI 144
The following BLAST results are available for this feature:
BLAST of NO10G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25444.16.100e-4254.60putative domain SAYSvFN [Nannochloropsis gaditana][more]
CBJ25622.11.300e-732.86conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01120.1NO10G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670293gene_4106Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g140gene5161Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01120.1NO10G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01120 ID=NO10G01120|Name=NO10G01120|organism=Nannochloropsis oceanica|type=gene|length=1482bp
AGTGATGCATTGATCTGGCGGAAGGAAACCAGGCGAGACATTCGATTAGG
AACGAATGTTGTGAGGGGGCCAAGAGCAGCGACGAAGCAAGTATCATCAG
TAAGAGCCGTCGTCATCTGAGTTCGTGCAATCAGTGATTCCCCAATACAT
ATCCGCGCGACAAGCAGAGAGTGTTATAATACAAAGTAGTGGGACTGACA
TAAGTGCCCGTAATCCCGCCGCCTTGCTTGTCACGCGAAATTGTAAGGCT
GGTGGCCTCGCTGGGAAGCATTATGCTCTTTATGAGTGGCTTGTTTCCTT
GAGCGAGGATTCATTCTTCTCTCTGACTGGGGGCATGAACGAAAGCAGTT
GTCAAGTAAGCGAAGTCGCCTTCGTACACACGGGTACATTCAGCCATAAA
TGGTTTGATGATAACCGCTTGTAGAGTCTACCTGTGAAATCTAGCGCTTC
TTCCTTCAGGAGGACACCCTTAACACTCTAACCCCCTCTCTATCCTCATG
CACTCACACTCGTAGGGCTACGCACACTTACGGAGAGCTCAATTACTAAT
AACTAACTTGCTTTTGCCCCAGTCGTCATCATCTGTGCTCCCCAGCCGCT
TTCAACATCCCTGCCATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCG
TCCTCCGCACCCACAACCACCTGGTCAAGTCCAATCCCAAAACCCCACCA
AATGGTACACCCTCGCCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACC
CCTCCCACGCGTCGCGACCTCCATAGCTTCGTTCACTCCACCCGCCAAAC
CCTCTCTCTCATTTGCGCCGAAACATATCACTTCATCCGCTTCGTCTCCC
CCTTAGTCCGTCGGGTGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTC
CCACTCACCGCCTTCTCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTT
TGGGGTTGTCTTTCTCATAATAGCGGCCTTGTCATTGATTTTGACGGTAG
GTTTGGGTGATGATGCGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGG
AGTGTCTTCAATCGAGGAATGGCTACGATGATGGGGGCGATTAATCCCGA
GCAGTTTGAAGCGGAGATAAGAAATTACCAATTAGTGGGGGAGGGAGCTT
TGGGTGGGATGGTGGGAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAG
GAGGAGGAGGATGAGGGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGG
AGGAAGGGGTCCGTCGAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTG
ATCGGGATAGGAGGAGGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGG
GAAGAGTGGGAGGAGGACTGGGTCTCGGATGAGGGGGAAGGTTGAGGAAG
AGTGGGAGGAGACGGAATGTGTACACCACGACATGAAGATATTAAGTTTT
TGTAAAGAAACTAATATGATGTATGTAATAGG
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protein sequence of NO10G01120.1

>NO10G01120.1-protein ID=NO10G01120.1-protein|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPPVHRGAPPRRPPHPQPPGQVQSQNPTKWYTLACTIAFELRPFTPPTRR
DLHSFVHSTRQTLSLICAETYHFIRFVSPLVRRVGRNLTSWRYLLPLTAF
SSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEGKISPWSVFNR
GMATMMGAINPEQFEAEIRNYQLVGEGALGGMVGGERMEMEEEEEEEEDE
GREEERGGGGGGGRGPSRKSGKKARRKFDRDRRRERMLLAAGGGGEEWEE
DWVSDEGEG*
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Synonyms
Publications