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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:337903..339384 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01120.1 vs.
Match: EWM25444.1 (putative domain SAYSvFN [Nannochloropsis gaditana]) HSP 1 Score: 219.2 bits (557), Expect = 1.500e-53 Identity = 135/255 (52.94%), Postives = 168/255 (65.88%), Query Frame = 0
Query: 10 PRRPPHPQPPGQVQSQNPTKWYTLACTIAFELRPFTPPTRRDLHSFVHSTRQTLSLICAETYHFIRFVS-PLVRRVGRNLTSWRYLLPLTAFSSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEG--KISPWSVFNRGMATMMGAINPEQFEAEIRNYQLVGEGALGGMVGGERMEMEE----EEEEEEDEGREEERGGGGGGGR-GPSRKSGKKARRKFDRDRRRERMLLAAGGGGEEWEEDWVSDE 257
P R P S ++WY AC +A+ELRPFTPPT DL ++ S+RQ IC E F + V+ PL+ RV L SWRY +PLTAF++AFYLAV AEFG+VFLI+++L LI TVGLGDDA+ + ++SPWSVFNRGM TMMG INPEQF+AE+R+Y++ GEG+ G M +E + + EGRE GG G G G SRKSGKKARR FDRD+RR + GGG EEWEEDWVSD+
Sbjct: 3 PARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQG--RGGGGEEEWEEDWVSDD 255
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01120.1 ID=NO10G01120.1|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp AGTGATGCATTGATCTGGCGGAAGGAAACCAGGCGAGACATTCGATTAGG AACGAATGTTGTGAGGGGGCCAAGAGCAGCGACGAAGCAAGTATCATCAG TAAGAGCCGTCGTCATCTGAGTTCGTGCAATCAGTGATTCCCCAATACAT ATCCGCGCGACAAGCAGAGAGTGTTATAATACAAAGTAGTGGGACTGACA TAAGTGCCCGTAATCCCGCCGCCTTGCTTGTCACGCGAAATTGTAAGGCT GGTGGCCTCGCTGGGAAGCATTATGCTCTTTATGAGTGGCTTGTTTCCTT GAGCGAGGATTCATTCTTCTCTCTGACTGGGGGCATGAACGAAAGCAGTT GTCAAGTAAGCGAAGTCGCCTTCGTACACACGGGTACATTCAGCCATAAA TGGTTTGATGATAACCGCTTGTAGAGTCTACCTGTGAAATCTAGCGCTTC TTCCTTCAGGAGGACACCCTTAACACTCTAACCCCCTCTCTATCCTCATG CACTCACACTCGTAGGGCTACGCACACTTACGGAGAGCTCAATTACTAAT AACTAACTTGCTTTTGCCCCAGTCGTCATCATCTGTGCTCCCCAGCCGCT TTCAACATCCCTGCCATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCG TCCTCCGCACCCACAACCACCTGGTCAAGTCCAATCCCAAAACCCCACCA AATGGTACACCCTCGCCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACC CCTCCCACGCGTCGCGACCTCCATAGCTTCGTTCACTCCACCCGCCAAAC CCTCTCTCTCATTTGCGCCGAAACATATCACTTCATCCGCTTCGTCTCCC CCTTAGTCCGTCGGGTGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTC CCACTCACCGCCTTCTCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTT TGGGGTTGTCTTTCTCATAATAGCGGCCTTGTCATTGATTTTGACGGTAG GTTTGGGTGATGATGCGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGG AGTGTCTTCAATCGAGGAATGGCTACGATGATGGGGGCGATTAATCCCGA GCAGTTTGAAGCGGAGATAAGAAATTACCAATTAGTGGGGGAGGGAGCTT TGGGTGGGATGGTGGGAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAG GAGGAGGAGGATGAGGGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGG AGGAAGGGGTCCGTCGAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTG ATCGGGATAGGAGGAGGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGG GAAGAGTGGGAGGAGGACTGGGTCTCGGATGAGGGGGAAGGTTGAGGAAG AGTGGGAGGAGACGGAATGTGTACACCACGACATGAAGATATTAAGTTTT TGTAAAGAAACTAATATGATGTATGTAATAGG back to topprotein sequence of NO10G01120.1 >NO10G01120.1-protein ID=NO10G01120.1-protein|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp MPPVHRGAPPRRPPHPQPPGQVQSQNPTKWYTLACTIAFELRPFTPPTRR DLHSFVHSTRQTLSLICAETYHFIRFVSPLVRRVGRNLTSWRYLLPLTAF SSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEGKISPWSVFNR GMATMMGAINPEQFEAEIRNYQLVGEGALGGMVGGERMEMEEEEEEEEDE GREEERGGGGGGGRGPSRKSGKKARRKFDRDRRRERMLLAAGGGGEEWEE DWVSDEGEG* back to topmRNA from alignment at chr10:337903..339384+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01120.1 ID=NO10G01120.1|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at chr10:337903..339384+ (Nannochloropsis oceanica) AGTGATGCATTGATCTGGCGGAAGGAAACCAGGCGAGACATTCGATTAGG
AACGAATGTTGTGAGGGGGCCAAGAGCAGCGACGAAGCAAGTATCATCAG
TAAGAGCCGTCGTCATCTGAGTTCGTGCAATCAGTGATTCCCCAATACAT
ATCCGCGCGACAAGCAGAGAGTGTTATAATACAAAGTAGTGGGACTGACA
TAAGTGCCCGTAATCCCGCCGCCTTGCTTGTCACGCGAAATTGTAAGGCT
GGTGGCCTCGCTGGGAAGCATTATGCTCTTTATGAGTGGCTTGTTTCCTT
GAGCGAGGATTCATTCTTCTCTCTGACTGGGGGCATGAACGAAAGCAGTT
GTCAAGTAAGCGAAGTCGCCTTCGTACACACGGGTACATTCAGCCATAAA
TGGTTTGATGATAACCGCTTGTAGAGTCTACCTGTGAAATCTAGCGCTTC
TTCCTTCAGGAGGACACCCTTAACACTCTAACCCCCTCTCTATCCTCATG
CACTCACACTCGTAGGGCTACGCACACTTACGGAGAGCTCAATTACTAAT
AACTAACTTGCTTTTGCCCCAGTCGTCATCATCTGTGCTCCCCAGCCGCT
TTCAACATCCCTGCCATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCG
TCCTCCGCACCCACAACCACCTGGTCAAGTCCAATCCCAAAACCCCACCA
AATGGTACACCCTCGCCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACC
CCTCCCACGCGTCGCGACCTCCATAGCTTCGTTCACTCCACCCGCCAAAC
CCTCTCTCTCATTTGCGCCGAAACATATCACTTCATCCGCTTCGTCTCCC
CCTTAGTCCGTCGGGTGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTC
CCACTCACCGCCTTCTCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTT
TGGGGTTGTCTTTCTCATAATAGCGGCCTTGTCATTGATTTTGACGGTAG
GTTTGGGTGATGATGCGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGG
AGTGTCTTCAATCGAGGAATGGCTACGATGATGGGGGCGATTAATCCCGA
GCAGTTTGAAGCGGAGATAAGAAATTACCAATTAGTGGGGGAGGGAGCTT
TGGGTGGGATGGTGGGAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAG
GAGGAGGAGGATGAGGGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGG
AGGAAGGGGTCCGTCGAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTG
ATCGGGATAGGAGGAGGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGG
GAAGAGTGGGAGGAGGACTGGGTCTCGGATGAGGGGGAAGGTTGAGGAAG
AGTGGGAGGAGACGGAATGTGTACACCACGACATGAAGATATTAAGTTTT
TGTAAAGAAACTAATATGATGTATGTAATAGG back to topCoding sequence (CDS) from alignment at chr10:337903..339384+ >NO10G01120.1 ID=NO10G01120.1|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr10:337903..339384+ (Nannochloropsis oceanica) ATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCGTCCTCCGCACCCACA ACCACCTGGTCAAGTCCAATCCCAAAACCCCACCAAATGGTACACCCTCG CCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACCCCTCCCACGCGTCGC GACCTCCATAGCTTCGTTCACTCCACCCGCCAAACCCTCTCTCTCATTTG CGCCGAAACATATCACTTCATCCGCTTCGTCTCCCCCTTAGTCCGTCGGG TGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTCCCACTCACCGCCTTC TCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTTTGGGGTTGTCTTTCT CATAATAGCGGCCTTGTCATTGATTTTGACGGTAGGTTTGGGTGATGATG CGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGGAGTGTCTTCAATCGA GGAATGGCTACGATGATGGGGGCGATTAATCCCGAGCAGTTTGAAGCGGA GATAAGAAATTACCAATTAGTGGGGGAGGGAGCTTTGGGTGGGATGGTGG GAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAGGAGGAGGAGGATGAG GGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGGAGGAAGGGGTCCGTC GAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTGATCGGGATAGGAGGA GGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGGGAAGAGTGGGAGGAG GACTGGGTCTCGGATGAGGGGGAAGGTTGA back to top
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