NO10G01120.1, NO10G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01120.1
Unique NameNO10G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1482
Alignment locationchr10:337903..339384 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:337903..339384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G01120.1 vs.
Match: EWM25444.1 (putative domain SAYSvFN [Nannochloropsis gaditana])

HSP 1 Score: 219.2 bits (557), Expect = 1.500e-53
Identity = 135/255 (52.94%), Postives = 168/255 (65.88%), Query Frame = 0
Query:   10 PRRPPHPQPPGQVQSQNPTKWYTLACTIAFELRPFTPPTRRDLHSFVHSTRQTLSLICAETYHFIRFVS-PLVRRVGRNLTSWRYLLPLTAFSSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEG--KISPWSVFNRGMATMMGAINPEQFEAEIRNYQLVGEGALGGMVGGERMEMEE----EEEEEEDEGREEERGGGGGGGR-GPSRKSGKKARRKFDRDRRRERMLLAAGGGGEEWEEDWVSDE 257
            P R     P     S   ++WY  AC +A+ELRPFTPPT  DL  ++ S+RQ    IC E   F + V+ PL+ RV   L SWRY +PLTAF++AFYLAV AEFG+VFLI+++L LI TVGLGDDA+   +   ++SPWSVFNRGM TMMG INPEQF+AE+R+Y++ GEG+ G       M  +E    +    + EGRE   GG G  G  G SRKSGKKARR FDRD+RR +     GGG EEWEEDWVSD+
Sbjct:    3 PARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQG--RGGGGEEEWEEDWVSDD 255          
The following BLAST results are available for this feature:
BLAST of NO10G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25444.11.500e-5352.94putative domain SAYSvFN [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01120NO10G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01120.1NO10G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01120.1.cds1NO10G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01120.1 ID=NO10G01120.1|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
AGTGATGCATTGATCTGGCGGAAGGAAACCAGGCGAGACATTCGATTAGG
AACGAATGTTGTGAGGGGGCCAAGAGCAGCGACGAAGCAAGTATCATCAG
TAAGAGCCGTCGTCATCTGAGTTCGTGCAATCAGTGATTCCCCAATACAT
ATCCGCGCGACAAGCAGAGAGTGTTATAATACAAAGTAGTGGGACTGACA
TAAGTGCCCGTAATCCCGCCGCCTTGCTTGTCACGCGAAATTGTAAGGCT
GGTGGCCTCGCTGGGAAGCATTATGCTCTTTATGAGTGGCTTGTTTCCTT
GAGCGAGGATTCATTCTTCTCTCTGACTGGGGGCATGAACGAAAGCAGTT
GTCAAGTAAGCGAAGTCGCCTTCGTACACACGGGTACATTCAGCCATAAA
TGGTTTGATGATAACCGCTTGTAGAGTCTACCTGTGAAATCTAGCGCTTC
TTCCTTCAGGAGGACACCCTTAACACTCTAACCCCCTCTCTATCCTCATG
CACTCACACTCGTAGGGCTACGCACACTTACGGAGAGCTCAATTACTAAT
AACTAACTTGCTTTTGCCCCAGTCGTCATCATCTGTGCTCCCCAGCCGCT
TTCAACATCCCTGCCATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCG
TCCTCCGCACCCACAACCACCTGGTCAAGTCCAATCCCAAAACCCCACCA
AATGGTACACCCTCGCCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACC
CCTCCCACGCGTCGCGACCTCCATAGCTTCGTTCACTCCACCCGCCAAAC
CCTCTCTCTCATTTGCGCCGAAACATATCACTTCATCCGCTTCGTCTCCC
CCTTAGTCCGTCGGGTGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTC
CCACTCACCGCCTTCTCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTT
TGGGGTTGTCTTTCTCATAATAGCGGCCTTGTCATTGATTTTGACGGTAG
GTTTGGGTGATGATGCGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGG
AGTGTCTTCAATCGAGGAATGGCTACGATGATGGGGGCGATTAATCCCGA
GCAGTTTGAAGCGGAGATAAGAAATTACCAATTAGTGGGGGAGGGAGCTT
TGGGTGGGATGGTGGGAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAG
GAGGAGGAGGATGAGGGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGG
AGGAAGGGGTCCGTCGAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTG
ATCGGGATAGGAGGAGGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGG
GAAGAGTGGGAGGAGGACTGGGTCTCGGATGAGGGGGAAGGTTGAGGAAG
AGTGGGAGGAGACGGAATGTGTACACCACGACATGAAGATATTAAGTTTT
TGTAAAGAAACTAATATGATGTATGTAATAGG
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protein sequence of NO10G01120.1

>NO10G01120.1-protein ID=NO10G01120.1-protein|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPPVHRGAPPRRPPHPQPPGQVQSQNPTKWYTLACTIAFELRPFTPPTRR
DLHSFVHSTRQTLSLICAETYHFIRFVSPLVRRVGRNLTSWRYLLPLTAF
SSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEGKISPWSVFNR
GMATMMGAINPEQFEAEIRNYQLVGEGALGGMVGGERMEMEEEEEEEEDE
GREEERGGGGGGGRGPSRKSGKKARRKFDRDRRRERMLLAAGGGGEEWEE
DWVSDEGEG*
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mRNA from alignment at chr10:337903..339384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01120.1 ID=NO10G01120.1|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at chr10:337903..339384+ (Nannochloropsis oceanica)
AGTGATGCATTGATCTGGCGGAAGGAAACCAGGCGAGACATTCGATTAGG AACGAATGTTGTGAGGGGGCCAAGAGCAGCGACGAAGCAAGTATCATCAG TAAGAGCCGTCGTCATCTGAGTTCGTGCAATCAGTGATTCCCCAATACAT ATCCGCGCGACAAGCAGAGAGTGTTATAATACAAAGTAGTGGGACTGACA TAAGTGCCCGTAATCCCGCCGCCTTGCTTGTCACGCGAAATTGTAAGGCT GGTGGCCTCGCTGGGAAGCATTATGCTCTTTATGAGTGGCTTGTTTCCTT GAGCGAGGATTCATTCTTCTCTCTGACTGGGGGCATGAACGAAAGCAGTT GTCAAGTAAGCGAAGTCGCCTTCGTACACACGGGTACATTCAGCCATAAA TGGTTTGATGATAACCGCTTGTAGAGTCTACCTGTGAAATCTAGCGCTTC TTCCTTCAGGAGGACACCCTTAACACTCTAACCCCCTCTCTATCCTCATG CACTCACACTCGTAGGGCTACGCACACTTACGGAGAGCTCAATTACTAAT AACTAACTTGCTTTTGCCCCAGTCGTCATCATCTGTGCTCCCCAGCCGCT TTCAACATCCCTGCCATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCG TCCTCCGCACCCACAACCACCTGGTCAAGTCCAATCCCAAAACCCCACCA AATGGTACACCCTCGCCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACC CCTCCCACGCGTCGCGACCTCCATAGCTTCGTTCACTCCACCCGCCAAAC CCTCTCTCTCATTTGCGCCGAAACATATCACTTCATCCGCTTCGTCTCCC CCTTAGTCCGTCGGGTGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTC CCACTCACCGCCTTCTCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTT TGGGGTTGTCTTTCTCATAATAGCGGCCTTGTCATTGATTTTGACGGTAG GTTTGGGTGATGATGCGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGG AGTGTCTTCAATCGAGGAATGGCTACGATGATGGGGGCGATTAATCCCGA GCAGTTTGAAGCGGAGATAAGAAATTACCAATTAGTGGGGGAGGGAGCTT TGGGTGGGATGGTGGGAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAG GAGGAGGAGGATGAGGGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGG AGGAAGGGGTCCGTCGAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTG ATCGGGATAGGAGGAGGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGG GAAGAGTGGGAGGAGGACTGGGTCTCGGATGAGGGGGAAGGTTGAGGAAG AGTGGGAGGAGACGGAATGTGTACACCACGACATGAAGATATTAAGTTTT TGTAAAGAAACTAATATGATGTATGTAATAGG
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Coding sequence (CDS) from alignment at chr10:337903..339384+

>NO10G01120.1 ID=NO10G01120.1|Name=NO10G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr10:337903..339384+ (Nannochloropsis oceanica)
ATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCGTCCTCCGCACCCACA
ACCACCTGGTCAAGTCCAATCCCAAAACCCCACCAAATGGTACACCCTCG
CCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACCCCTCCCACGCGTCGC
GACCTCCATAGCTTCGTTCACTCCACCCGCCAAACCCTCTCTCTCATTTG
CGCCGAAACATATCACTTCATCCGCTTCGTCTCCCCCTTAGTCCGTCGGG
TGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTCCCACTCACCGCCTTC
TCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTTTGGGGTTGTCTTTCT
CATAATAGCGGCCTTGTCATTGATTTTGACGGTAGGTTTGGGTGATGATG
CGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGGAGTGTCTTCAATCGA
GGAATGGCTACGATGATGGGGGCGATTAATCCCGAGCAGTTTGAAGCGGA
GATAAGAAATTACCAATTAGTGGGGGAGGGAGCTTTGGGTGGGATGGTGG
GAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAGGAGGAGGAGGATGAG
GGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGGAGGAAGGGGTCCGTC
GAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTGATCGGGATAGGAGGA
GGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGGGAAGAGTGGGAGGAG
GACTGGGTCTCGGATGAGGGGGAAGGTTGA
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Synonyms
Publications