NO10G01050, NO10G01050 (gene) Nannochloropsis oceanica

Overview
NameNO10G01050
Unique NameNO10G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1975
Alignment locationchr10:320736..322710 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:320736..322710 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G01050 vs. NCBI_GenBank
Match: EWM25371.1 (hypothetical protein Naga_100005g143 [Nannochloropsis gaditana])

HSP 1 Score: 258.8 bits (660), Expect = 2.900e-65
Identity = 128/193 (66.32%), Postives = 154/193 (79.79%), Query Frame = 0 
Query:  239 VPSSVEMSFTAAQLADRLVEVYNGRSSRRFDALADCFTPDVSLCVLKTNAAVIHGAQPLTASMPAEYAKQTAHVTRRLFITTDLPEDDPSFSLDFYPAGQGPGMNAFGKGNAKMDTILLFQANPGDTCGNKISQVWIAPDREGVASRGREGGRVTEEDVVKSKVFRQVLEVVQGKVKGELRFYMHDYVFMDTI 432
            V S  +MSFTAAQLADRLVEVYN +SSRRF+ALA+CF PDVSL +LK+ A V+ G Q LTASMPA+YAK TA VTRRLFITT LP +DPSFS+DFYPAGQGPG+NAFGKGN K+DTIL+F+        N I+QVWIAPDR+G+ASR  + G VTE  V+ SK F QV  V+QG+VKG++ ++MHDY+ M TI
Sbjct:   78 VCSPADMSFTAAQLADRLVEVYNQKSSRRFEALAECFAPDVSLRLLKSGATVVKGVQALTASMPADYAKHTARVTRRLFITTSLPSEDPSFSMDFYPAGQGPGINAFGKGNVKLDTILVFEVKSDGR--NVINQVWIAPDRDGIASRREDQGAVTELSVLSSKAFPQVAAVLQGRVKGKISYHMHDYLHMATI 268
The following BLAST results are available for this feature:
BLAST of NO10G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25371.12.900e-6566.32hypothetical protein Naga_100005g143 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000977NSK000977Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01050.1NO10G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586576gene_4111Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g143gene5164Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01050.1NO10G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01050 ID=NO10G01050|Name=NO10G01050|organism=Nannochloropsis oceanica|type=gene|length=1975bp
ACAGGTTCCTCGCCGACCCAGGCGCACACCGGGCTGGACATTTCCCAATC
GTCGCGGCGGCAGCATCAAGATCATCATCGTCACCGAACAAATCTCAAGC
CATGTCCAGTGGCGGCGGCGGGAGCAGCGGCCATAGACAAGTCTCACATC
CCCGCCACGCGCGACCGAAGCATCCGGATCGTGTTGGCGGGGGAGGAGGC
TCGTTCAAGGAAGACAGCCATAATCCAAAAAATGACAGAGGCTGGGGTGG
AGCCGGCGCGGTGGGCTGGGGCGTGCTTGGTGCATTTGGTTCGTTGGAAA
AGGACACGGCCGCGCAGGTGGCAAGAAAAGGGACGCATGATCCGAATGTA
AAGATGGTGAAGAATGAGAAGGGGCTGTGGGTCAAGGTCCGCGTGGAGCC
CGGAGGAGGCGGAGGACGAGGGAGGGGGGGGGTATTCCTGCTCTCGGCGG
TGAGTTCGGGAGCTTACAGGAGGGAAGGCCGTACAACGACAAAGGGGAAG
AATACGAAGAGAGAGATGACGACGGCATGGGGCAGGAAGGAGGACAAAGG
AAGCGCTCCGACTCCTTGTCCTCCTCTTCATCCCGCTCTTCATCCCCACG
GGATAGGCACCGTTTTCGGTCTCGGTCGCGCGAGCATAATCGAGATCGGA
GTTCGTCTAGGGATAAACACCGAGGGCAACGAAGTCAGAGGGGAATGGGG
AGGGAAGAACGATGCGCGCGCTCTCTATCCCCCTCTGAAGAGGAGAAGAG
GCAAGGGAGGAGGCAAAGAGAGAGGGGGCATTCGCGCTCTCGCAGCCGGT
CACAGGGGAGAGGAAGAGAGCGAGATCAGCAGCGTCGCCGCGATAACAGA
GAGAGGAAACATCGCAGTCGGAGCGGTAGCAAGAATAGGAAGGGCAGGTG
GAGGAGCAGGAGTGGCAGTAGGATTGGCGCAAGGGAACGTGGAGGCGGGG
AGGAGGAGAAGAGGAAAGGGAGGGATGACTCGCCGGGGGAGCGGTGGAAG
AGGAAGGAAAACAGCAGCAGAAACAGAGGAAGGAGCAGCAGCAGGAGTTC
TAGTAGGAATAGAAGCAAGGAAGGAAATGGCCGGAAGCGACGCCCACAGT
CCACGTCTCCTTCCTGCTCCTCGTCTCCTTCATCTTCTTTTCCTGCTGCT
GTCCCCAAGGCACGAGGAAGACGAGCAGACAATGACAGAAAAGAAAAGAG
GCAGGAGGAAGAGGAGGTAAAGAAGCAGCAGCAGGACGTCGTGCCATCAT
CAGTAGAGATGTCCTTTACTGCTGCCCAGgtatgaggcggaagagggagg
gagagagggagagtttgagggaagctttttggcccaaagctcggtgacgg
cagcatttgatgaccatagatacccaacctgatcacattccttccctttc
ctttttgccccctccctctcctcggacagCTTGCTGACCGCCTCGTTGAA
GTTTACAATGGAAGATCTTCCCGGCGCTTCGACGCCCTGGCCGACTGTTT
CACCCCCGACGTGTCCCTGTGCGTGCTCAAGACAAATGCCGCAGTCATCC
ACGGCGCCCAGCCCCTCACTGCCTCCATGCCCGCCGAATACGCCAAGCAA
ACTGCCCATGTGACACGGCGTTTGTTCATCACCACGGACCTCCCAGAGGA
CGACCCCTCGTTTTCACTTGACTTCTACCCTGCTGGGCAAGGGCCAGGCA
TGAATGCCTTTGGGAAAGGCAATGCTAAAATGGACACGATTTTATTGTTC
CAAGCCAACCCGGGGGATACGTGTGGAAATAAAATAAGTCAGGTGTGGAT
TGCCCCCGATAGGGAGGGGGTGGCCTCGAGGGGGAGGGAGGGAGGGAGGG
TGACGGAGGAGGACGTGGTCAAGAGTAAGGTGTTCAGGCAGGTGCTGGAA
GTGGTGCAGGGGAAGGTGAAGGGGGAGTTGAGGTTTTATATGCACGACTA
CGTGTTCATGGACACGATCGGATAG
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protein sequence of NO10G01050.1

>NO10G01050.1-protein ID=NO10G01050.1-protein|Name=NO10G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MGQEGGQRKRSDSLSSSSSRSSSPRDRHRFRSRSREHNRDRSSSRDKHRG
QRSQRGMGREERCARSLSPSEEEKRQGRRQRERGHSRSRSRSQGRGRERD
QQRRRDNRERKHRSRSGSKNRKGRWRSRSGSRIGARERGGGEEEKRKGRD
DSPGERWKRKENSSRNRGRSSSRSSSRNRSKEGNGRKRRPQSTSPSCSSS
PSSSFPAAVPKARGRRADNDRKEKRQEEEEVKKQQQDVVPSSVEMSFTAA
QLADRLVEVYNGRSSRRFDALADCFTPDVSLCVLKTNAAVIHGAQPLTAS
MPAEYAKQTAHVTRRLFITTDLPEDDPSFSLDFYPAGQGPGMNAFGKGNA
KMDTILLFQANPGDTCGNKISQVWIAPDREGVASRGREGGRVTEEDVVKS
KVFRQVLEVVQGKVKGELRFYMHDYVFMDTIG*
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Synonyms
Publications