NO10G01050.1, NO10G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01050.1
Unique NameNO10G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1825
Alignment locationchr10:320736..322710 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:320736..322710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01050.1 vs.
Match: EWM25371.1 (hypothetical protein Naga_100005g143 [Nannochloropsis gaditana])

HSP 1 Score: 253.4 bits (646), Expect = 1.200e-63
Identity = 155/276 (56.16%), Postives = 191/276 (69.20%), Query Frame = 0 
Query:  159 RKENSSRNRGRSSSRSSSRNRSKEGNGRKRRPQSTSPSCS---SSPSSSFPAAVPKARGRRADNDRKEKRQEEEEVKKQQQDVVPSSVEMSFTAAQLADRLVEVYNGRSSRRFDALADCFTPDVSLCVLKTNAAVIHGAQPLTASMPAEYAKQTAHVTRRLFITTDLPEDDPSFSLDFYPAGQGPGMNAFGKGNAKMDTILLFQANPGDTCGNKISQVWIAPDREGVASRGREGGRVTEEDVVKSKVFRQVLEVVQGKVKGELRFYMHDYVFMDTI 432
            R++ SS + GR   R   R  S +  GR+RR +  S       SS SSS P AV + RG   D +    +   E VK+     V S  +MSFTAAQLADRLVEVYN +SSRRF+ALA+CF PDVSL +LK+ A V+ G Q LTASMPA+YAK TA VTRRLFITT LP +DPSFS+DFYPAGQGPG+NAFGKGN K+DTIL+F+        N I+QVWIAPDR+G+ASR  + G VTE  V+ SK F QV  V+QG+VKG++ ++MHDY+ M TI
Sbjct:    4 RRDRSSSSDGRREMR---RGGSGDRRGRERRGEGGSRGSRGRRSSSSSSSPEAV-RERGSGRDREEAGGQGGIEGVKE-----VCSPADMSFTAAQLADRLVEVYNQKSSRRFEALAECFAPDVSLRLLKSGATVVKGVQALTASMPADYAKHTARVTRRLFITTSLPSEDPSFSMDFYPAGQGPGINAFGKGNVKLDTILVFEVKSDGR--NVINQVWIAPDRDGIASRREDQGAVTELSVLSSKAFPQVAAVLQGRVKGKISYHMHDYLHMATI 268
The following BLAST results are available for this feature:
BLAST of NO10G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25371.11.200e-6356.16hypothetical protein Naga_100005g143 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01050NO10G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01050.1NO10G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01050.1.cds1NO10G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01050.1.cds2NO10G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01050.1 ID=NO10G01050.1|Name=NO10G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp
ACAGGTTCCTCGCCGACCCAGGCGCACACCGGGCTGGACATTTCCCAATC
GTCGCGGCGGCAGCATCAAGATCATCATCGTCACCGAACAAATCTCAAGC
CATGTCCAGTGGCGGCGGCGGGAGCAGCGGCCATAGACAAGTCTCACATC
CCCGCCACGCGCGACCGAAGCATCCGGATCGTGTTGGCGGGGGAGGAGGC
TCGTTCAAGGAAGACAGCCATAATCCAAAAAATGACAGAGGCTGGGGTGG
AGCCGGCGCGGTGGGCTGGGGCGTGCTTGGTGCATTTGGTTCGTTGGAAA
AGGACACGGCCGCGCAGGTGGCAAGAAAAGGGACGCATGATCCGAATGTA
AAGATGGTGAAGAATGAGAAGGGGCTGTGGGTCAAGGTCCGCGTGGAGCC
CGGAGGAGGCGGAGGACGAGGGAGGGGGGGGGTATTCCTGCTCTCGGCGG
TGAGTTCGGGAGCTTACAGGAGGGAAGGCCGTACAACGACAAAGGGGAAG
AATACGAAGAGAGAGATGACGACGGCATGGGGCAGGAAGGAGGACAAAGG
AAGCGCTCCGACTCCTTGTCCTCCTCTTCATCCCGCTCTTCATCCCCACG
GGATAGGCACCGTTTTCGGTCTCGGTCGCGCGAGCATAATCGAGATCGGA
GTTCGTCTAGGGATAAACACCGAGGGCAACGAAGTCAGAGGGGAATGGGG
AGGGAAGAACGATGCGCGCGCTCTCTATCCCCCTCTGAAGAGGAGAAGAG
GCAAGGGAGGAGGCAAAGAGAGAGGGGGCATTCGCGCTCTCGCAGCCGGT
CACAGGGGAGAGGAAGAGAGCGAGATCAGCAGCGTCGCCGCGATAACAGA
GAGAGGAAACATCGCAGTCGGAGCGGTAGCAAGAATAGGAAGGGCAGGTG
GAGGAGCAGGAGTGGCAGTAGGATTGGCGCAAGGGAACGTGGAGGCGGGG
AGGAGGAGAAGAGGAAAGGGAGGGATGACTCGCCGGGGGAGCGGTGGAAG
AGGAAGGAAAACAGCAGCAGAAACAGAGGAAGGAGCAGCAGCAGGAGTTC
TAGTAGGAATAGAAGCAAGGAAGGAAATGGCCGGAAGCGACGCCCACAGT
CCACGTCTCCTTCCTGCTCCTCGTCTCCTTCATCTTCTTTTCCTGCTGCT
GTCCCCAAGGCACGAGGAAGACGAGCAGACAATGACAGAAAAGAAAAGAG
GCAGGAGGAAGAGGAGGTAAAGAAGCAGCAGCAGGACGTCGTGCCATCAT
CAGTAGAGATGTCCTTTACTGCTGCCCAGCTTGCTGACCGCCTCGTTGAA
GTTTACAATGGAAGATCTTCCCGGCGCTTCGACGCCCTGGCCGACTGTTT
CACCCCCGACGTGTCCCTGTGCGTGCTCAAGACAAATGCCGCAGTCATCC
ACGGCGCCCAGCCCCTCACTGCCTCCATGCCCGCCGAATACGCCAAGCAA
ACTGCCCATGTGACACGGCGTTTGTTCATCACCACGGACCTCCCAGAGGA
CGACCCCTCGTTTTCACTTGACTTCTACCCTGCTGGGCAAGGGCCAGGCA
TGAATGCCTTTGGGAAAGGCAATGCTAAAATGGACACGATTTTATTGTTC
CAAGCCAACCCGGGGGATACGTGTGGAAATAAAATAAGTCAGGTGTGGAT
TGCCCCCGATAGGGAGGGGGTGGCCTCGAGGGGGAGGGAGGGAGGGAGGG
TGACGGAGGAGGACGTGGTCAAGAGTAAGGTGTTCAGGCAGGTGCTGGAA
GTGGTGCAGGGGAAGGTGAAGGGGGAGTTGAGGTTTTATATGCACGACTA
CGTGTTCATGGACACGATCGGATAG
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protein sequence of NO10G01050.1

>NO10G01050.1-protein ID=NO10G01050.1-protein|Name=NO10G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MGQEGGQRKRSDSLSSSSSRSSSPRDRHRFRSRSREHNRDRSSSRDKHRG
QRSQRGMGREERCARSLSPSEEEKRQGRRQRERGHSRSRSRSQGRGRERD
QQRRRDNRERKHRSRSGSKNRKGRWRSRSGSRIGARERGGGEEEKRKGRD
DSPGERWKRKENSSRNRGRSSSRSSSRNRSKEGNGRKRRPQSTSPSCSSS
PSSSFPAAVPKARGRRADNDRKEKRQEEEEVKKQQQDVVPSSVEMSFTAA
QLADRLVEVYNGRSSRRFDALADCFTPDVSLCVLKTNAAVIHGAQPLTAS
MPAEYAKQTAHVTRRLFITTDLPEDDPSFSLDFYPAGQGPGMNAFGKGNA
KMDTILLFQANPGDTCGNKISQVWIAPDREGVASRGREGGRVTEEDVVKS
KVFRQVLEVVQGKVKGELRFYMHDYVFMDTIG*
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mRNA from alignment at chr10:320736..322710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01050.1 ID=NO10G01050.1|Name=NO10G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp|location=Sequence derived from alignment at chr10:320736..322710- (Nannochloropsis oceanica)
ACAGGTTCCTCGCCGACCCAGGCGCACACCGGGCTGGACATTTCCCAATC
GTCGCGGCGGCAGCATCAAGATCATCATCGTCACCGAACAAATCTCAAGC
CATGTCCAGTGGCGGCGGCGGGAGCAGCGGCCATAGACAAGTCTCACATC
CCCGCCACGCGCGACCGAAGCATCCGGATCGTGTTGGCGGGGGAGGAGGC
TCGTTCAAGGAAGACAGCCATAATCCAAAAAATGACAGAGGCTGGGGTGG
AGCCGGCGCGGTGGGCTGGGGCGTGCTTGGTGCATTTGGTTCGTTGGAAA
AGGACACGGCCGCGCAGGTGGCAAGAAAAGGGACGCATGATCCGAATGTA
AAGATGGTGAAGAATGAGAAGGGGCTGTGGGTCAAGGTCCGCGTGGAGCC
CGGAGGAGGCGGAGGACGAGGGAGGGGGGGGGTATTCCTGCTCTCGGCGG
TGAGTTCGGGAGCTTACAGGAGGGAAGGCCGTACAACGACAAAGGGGAAG
AATACGAAGAGAGAGATGACGACGGCATGGGGCAGGAAGGAGGACAAAGG
AAGCGCTCCGACTCCTTGTCCTCCTCTTCATCCCGCTCTTCATCCCCACG
GGATAGGCACCGTTTTCGGTCTCGGTCGCGCGAGCATAATCGAGATCGGA
GTTCGTCTAGGGATAAACACCGAGGGCAACGAAGTCAGAGGGGAATGGGG
AGGGAAGAACGATGCGCGCGCTCTCTATCCCCCTCTGAAGAGGAGAAGAG
GCAAGGGAGGAGGCAAAGAGAGAGGGGGCATTCGCGCTCTCGCAGCCGGT
CACAGGGGAGAGGAAGAGAGCGAGATCAGCAGCGTCGCCGCGATAACAGA
GAGAGGAAACATCGCAGTCGGAGCGGTAGCAAGAATAGGAAGGGCAGGTG
GAGGAGCAGGAGTGGCAGTAGGATTGGCGCAAGGGAACGTGGAGGCGGGG
AGGAGGAGAAGAGGAAAGGGAGGGATGACTCGCCGGGGGAGCGGTGGAAG
AGGAAGGAAAACAGCAGCAGAAACAGAGGAAGGAGCAGCAGCAGGAGTTC
TAGTAGGAATAGAAGCAAGGAAGGAAATGGCCGGAAGCGACGCCCACAGT
CCACGTCTCCTTCCTGCTCCTCGTCTCCTTCATCTTCTTTTCCTGCTGCT
GTCCCCAAGGCACGAGGAAGACGAGCAGACAATGACAGAAAAGAAAAGAG
GCAGGAGGAAGAGGAGGTAAAGAAGCAGCAGCAGGACGTCGTGCCATCAT
CAGTAGAGATGTCCTTTACTGCTGCCCAGGTATGAGGCGGAAGAGGGAGG
GAGAGAGGGAGAGTTTGAGGGAAGCTTTTTGGCCCAAAGCTCGGTGACGG
CAGCATTTGATGACCATAGATACCCAACCTGATCACATTCCTTCCCTTTC
CTTTTTGCCCCCTCCCTCTCCTCGGACAGCTTGCTGACCGCCTCGTTGAA
GTTTACAATGGAAGATCTTCCCGGCGCTTCGACGCCCTGGCCGACTGTTT
CACCCCCGACGTGTCCCTGTGCGTGCTCAAGACAAATGCCGCAGTCATCC
ACGGCGCCCAGCCCCTCACTGCCTCCATGCCCGCCGAATACGCCAAGCAA
ACTGCCCATGTGACACGGCGTTTGTTCATCACCACGGACCTCCCAGAGGA
CGACCCCTCGTTTTCACTTGACTTCTACCCTGCTGGGCAAGGGCCAGGCA
TGAATGCCTTTGGGAAAGGCAATGCTAAAATGGACACGATTTTATTGTTC
CAAGCCAACCCGGGGGATACGTGTGGAAATAAAATAAGTCAGGTGTGGAT
TGCCCCCGATAGGGAGGGGGTGGCCTCGAGGGGGAGGGAGGGAGGGAGGG
TGACGGAGGAGGACGTGGTCAAGAGTAAGGTGTTCAGGCAGGTGCTGGAA
GTGGTGCAGGGGAAGGTGAAGGGGGAGTTGAGGTTTTATATGCACGACTA
CGTGTTCATGGACACGATCGGATAG
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Coding sequence (CDS) from alignment at chr10:320736..322710-

>NO10G01050.1 ID=NO10G01050.1|Name=NO10G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr10:320736..322710- (Nannochloropsis oceanica)
ATGGGGCAGGAAGGAGGACAAAGGAAGCGCTCCGACTCCTTGTCCTCCTC
TTCATCCCGCTCTTCATCCCCACGGGATAGGCACCGTTTTCGGTCTCGGT
CGCGCGAGCATAATCGAGATCGGAGTTCGTCTAGGGATAAACACCGAGGG
CAACGAAGTCAGAGGGGAATGGGGAGGGAAGAACGATGCGCGCGCTCTCT
ATCCCCCTCTGAAGAGGAGAAGAGGCAAGGGAGGAGGCAAAGAGAGAGGG
GGCATTCGCGCTCTCGCAGCCGGTCACAGGGGAGAGGAAGAGAGCGAGAT
CAGCAGCGTCGCCGCGATAACAGAGAGAGGAAACATCGCAGTCGGAGCGG
TAGCAAGAATAGGAAGGGCAGGTGGAGGAGCAGGAGTGGCAGTAGGATTG
GCGCAAGGGAACGTGGAGGCGGGGAGGAGGAGAAGAGGAAAGGGAGGGAT
GACTCGCCGGGGGAGCGGTGGAAGAGGAAGGAAAACAGCAGCAGAAACAG
AGGAAGGAGCAGCAGCAGGAGTTCTAGTAGGAATAGAAGCAAGGAAGGAA
ATGGCCGGAAGCGACGCCCACAGTCCACGTCTCCTTCCTGCTCCTCGTCT
CCTTCATCTTCTTTTCCTGCTGCTGTCCCCAAGGCACGAGGAAGACGAGC
AGACAATGACAGAAAAGAAAAGAGGCAGGAGGAAGAGGAGGTAAAGAAGC
AGCAGCAGGACGTCGTGCCATCATCAGTAGAGATGTCCTTTACTGCTGCC
CAGCTTGCTGACCGCCTCGTTGAAGTTTACAATGGAAGATCTTCCCGGCG
CTTCGACGCCCTGGCCGACTGTTTCACCCCCGACGTGTCCCTGTGCGTGC
TCAAGACAAATGCCGCAGTCATCCACGGCGCCCAGCCCCTCACTGCCTCC
ATGCCCGCCGAATACGCCAAGCAAACTGCCCATGTGACACGGCGTTTGTT
CATCACCACGGACCTCCCAGAGGACGACCCCTCGTTTTCACTTGACTTCT
ACCCTGCTGGGCAAGGGCCAGGCATGAATGCCTTTGGGAAAGGCAATGCT
AAAATGGACACGATTTTATTGTTCCAAGCCAACCCGGGGGATACGTGTGG
AAATAAAATAAGTCAGGTGTGGATTGCCCCCGATAGGGAGGGGGTGGCCT
CGAGGGGGAGGGAGGGAGGGAGGGTGACGGAGGAGGACGTGGTCAAGAGT
AAGGTGTTCAGGCAGGTGCTGGAAGTGGTGCAGGGGAAGGTGAAGGGGGA
GTTGAGGTTTTATATGCACGACTACGTGTTCATGGACACGATCGGATAG
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Synonyms
Publications