NO10G00980, NO10G00980 (gene) Nannochloropsis oceanica

Overview
NameNO10G00980
Unique NameNO10G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2232
Alignment locationchr10:303851..306082 +

Link to JBrowse

Properties
Property NameValue
DescriptionHypersensitive-induced response protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:303851..306082 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036013Band_7/SPFH_dom_sf
IPR001107Band_7
Homology
BLAST of NO10G00980 vs. NCBI_GenBank
Match: EWM25334.1 (hypersensitive-induced response protein [Nannochloropsis gaditana])

HSP 1 Score: 493.8 bits (1270), Expect = 3.700e-136
Identity = 249/292 (85.27%), Postives = 269/292 (92.12%), Query Frame = 0
Query:    1 MGDTSCFCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPHKYNGEGGREGGKEDVSGLVRDGVMQAQSR 293
            MG+ SC CC CVSTGEVG+VERNCKYNRL +PGITLMCWPFE M+SRVSLRIMQLDIRAETKT+DNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRM LD+AFEAKD IAHA+K SLQTCMGTYGYSILNALVTDLEPD RVK AMNEINASKR+KEAARERAEG+KIVQ+KIAEANAESKYLSGVGVAKQRKAIVDGLRESI+GFSGNVPGTT KDVMDL+LLTQYFDMLN+VGNNPST TVF+PHK       + G+E+V   VR+G++QAQSR
Sbjct:    1 MGE-SCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHK---PALAQNGEEEVGDQVRNGMLQAQSR 288          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: XP_005853774.1 (hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526] >XP_005854590.1 hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526] >EKU21771.1 hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526] >EKU22584.1 hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 414.5 bits (1064), Expect = 2.900e-112
Identity = 216/292 (73.97%), Postives = 234/292 (80.14%), Query Frame = 0
Query:    1 MGDTSCFCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPHKYNGEGGREGGKEDVSGLVRDGVMQAQSR 293
            MG+ SC CC CVSTGEVG+VERNCKYNRL +PGITLMCWPFE                                    VIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRM LD+AFEAKD IAHA+K SLQTCMGTYGYSILNALVTDLEPD RVK AMNEINASKR+KEAARERAEG+KIVQ+KIAEANAESKYLSGVGVAKQRKAIVDGLRESI+GFSGNVPGTT KDVMDL+LLTQYFDMLN+VGNNPST TVF+PHK       + G+E+V   VR+G++QAQSR
Sbjct:    1 MGE-SCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFE------------------------------------VIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHK---PALAQNGEEEVGDQVRNGMLQAQSR 252          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: CBN78487.1 (flagellar associated protein [Ectocarpus siliculosus])

HSP 1 Score: 332.0 bits (850), Expect = 1.900e-87
Identity = 165/284 (58.10%), Postives = 210/284 (73.94%), Query Frame = 0
Query:    8 CCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPHKYNGEGGREGGKEDVSGLVRDGVMQAQS 292
            C  CV   E+G++ER  KY  LA PG T + WP + + +++S R+ QLD+R ETKT+DNVFV   +S+QYQ I+ K++DA YRLT+PQ QIR+YVYDVVR+TLP++ LD AF++K+ IA A+K  L+  M  YGY IL ALVTD++PD RVKGAMNEINASKR++EAA  +AE DKI+Q+K AEA AESKYLSGVGV++QRKAIVDGLR+S+  FS  + GT+PKDVMDLLLLTQYFDML  VG +    TVF+PH              + G +RDG MQ Q+
Sbjct:   75 CFQCVPNAEIGVIERLGKYQGLAQPGFTCILWPLDSIVAKLSTRVQQLDVRMETKTKDNVFVTAVVSVQYQPIKSKIYDAFYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEEVMQEYGYQILQALVTDMDPDARVKGAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVA-------SLQGAMRDGFMQGQA 351          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: CBN78488.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 332.0 bits (850), Expect = 1.900e-87
Identity = 166/285 (58.25%), Postives = 212/285 (74.39%), Query Frame = 0
Query:    7 FCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPHKYNGEGGREGGKEDVSGLVRDGVMQAQS 292
            FC  CVS  EVG+VER  K+  LA PG+  + WP + + +++S R+ QLD+R ETKT+DNVFV   +S+QYQ I+EK++DA YRLT+PQ QIR+YV+DVVR+TLP++ LD AF++K+ IA A+K  L+  M  YGY IL ALVTD++PDPRVK AMNEINASKRM+EAA  +AE DKI+Q+K AEA AESKYLSGVGV++QRKAIVDGLR+S+  F+  + GT+PKDVMDLLLLTQYFDML  VG +    TVF+PH              +   +RDG MQ Q+
Sbjct:  115 FCFQCVSNSEVGVVERLGKFTGLAAPGLNCILWPIDVIVAKISTRVQQLDVRMETKTKDNVFVTAVVSVQYQPIKEKIYDAFYRLTDPQAQIRSYVFDVVRSTLPKLDLDQAFDSKEDIAVAVKNQLEEVMKEYGYQILQALVTDMDPDPRVKEAMNEINASKRMREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAA-------IQAAMRDGFMQGQA 392          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: EWM21496.1 (hypersensitive-induced response protein [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 3.400e-81
Identity = 154/259 (59.46%), Postives = 198/259 (76.45%), Query Frame = 0
Query:    5 SCFCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPH 264
            SC C  C+ T  +GI ER   + R+  PG+ L+CWP + +  RVS R+ QL     TKT+DNVFV V + +QYQVI  + +DA Y+LT+P  QIR+YV D+VR+T+P+M LD AFEAK+ +AHAI+ SLQ  MGTYGY+I+ +LV D+  D +VK AMNEINASKR++EAA E+AE DKIVQ+K AEA+AESKYL+G+G+A++RKAIVDGLR S+  FS  V G TPKDVMDL+LLTQYFDML  VGNNP+ TT+F+ H
Sbjct:    4 SCCCLQCIDTSTLGIQERFGNFVRILPPGMNLICWPIDNVVGRVSARVQQLVCDCGTKTKDNVFVAVQVIVQYQVIVSQAYDAYYKLTDPNLQIRSYVEDIVRSTVPKMELDMAFEAKEELAHAIRDSLQQTMGTYGYTIIQSLVLDIRVDEKVKTAMNEINASKRLREAAAEKAEADKIVQVKAAEASAESKYLNGMGIARERKAIVDGLRGSVEEFSETVEGATPKDVMDLILLTQYFDMLKDVGNNPTPTTLFMTH 262          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: XP_002179523.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49346.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 307.8 bits (787), Expect = 3.800e-80
Identity = 152/257 (59.14%), Postives = 195/257 (75.88%), Query Frame = 0
Query:    6 CFCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVP 263
            C CC  +ST EVG++ER  KY+RL  PG+ ++C P E +  ++S R+ QL++R ETKT DNVF+   +S+QYQV+R+KV++A Y L+NP  QI A+VYDV+R+ LP + LD  FEAK+ +A A+K +L   M TYGY I+  L+TDL+PD RVK AMNEIN+SKR+K A  ERAEGDKI+++K AEA AE+KYLSGVGVAKQRKAIVDGLR SIV FS +V G++ K+VMDLLLLTQYFDM+  VG      T FVP
Sbjct:    2 CLCCFTISTAEVGVIERWGKYSRLVQPGLNVICCPMESLVGKLSFRVQQLNVRVETKTLDNVFITSVVSVQYQVLRDKVYEAFYALSNPARQITAHVYDVMRSQLPTLELDAVFEAKEDLALAVKNALSEIMTTYGYQIVQTLITDLDPDQRVKNAMNEINSSKRLKYAVAERAEGDKILKVKGAEAEAEAKYLSGVGVAKQRKAIVDGLRTSIVDFSDHVEGSSTKEVMDLLLLTQYFDMIRDVGAESHCKTTFVP 258          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: GAX22592.1 (hypothetical protein FisN_14Hh224 [Fistulifera solaris])

HSP 1 Score: 307.8 bits (787), Expect = 3.800e-80
Identity = 157/258 (60.85%), Postives = 190/258 (73.64%), Query Frame = 0
Query:    6 CF-CCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVP 263
            CF CC  + T EVG+VER   ++RL  PG      P E +  ++S R+ QL++R ETKT DNVF+M  +S+QYQV+REKVFDA Y LTNP +QI A+VYDV+R+ LP + LD  FEAK+ +A  +K +L   M  YGY I+  L+TDL+PD RVK AMNEIN+SKR+K A  ERAEGDKI+Q+K AEA AESKYLSGVGV+KQRKAIVDGLR SIV FS NV G   KDVMDLLLLTQYFDM+  VG+ P   T FVP
Sbjct:    2 CFPCCFIIQTAEVGVVERFGLFSRLVQPGFNYTICPMEQLVGKLSFRVQQLNVRVETKTLDNVFLMAVVSVQYQVLREKVFDAYYALTNPTQQITAHVYDVMRSELPSLELDAVFEAKEELALTVKNALAETMTNYGYQIVQVLITDLDPDQRVKNAMNEINSSKRLKYAIAERAEGDKILQVKAAEAEAESKYLSGVGVSKQRKAIVDGLRSSIVDFSSNVQGAGTKDVMDLLLLTQYFDMIQSVGSAPHCKTTFVP 259          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: GAX10707.1 (hypothetical protein FisN_14Lh224 [Fistulifera solaris])

HSP 1 Score: 305.1 bits (780), Expect = 2.400e-79
Identity = 156/258 (60.47%), Postives = 190/258 (73.64%), Query Frame = 0
Query:    6 CF-CCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVP 263
            CF CC  + T EVG+VER   ++RL  PG      P E +  ++S R+ QLD+R ETKT DNVF+   +S+QYQV+REKVFDA Y LTNP +QI ++V+DV+R+ LP + LD  FEAK+ +A  +K +L   M  YGY I+  L+TDL+PD RVK AMNEIN+SKRMK AA E+AEGDKI+Q+K AEA AESKYLSGVGV+KQRKAIVDGLR SIV FS NV G   KDVMDLLLLTQYFDM+  VG+ P   T FVP
Sbjct:    2 CFPCCFIIQTAEVGVVERFGLFSRLVQPGFNYTICPMEQLVGKLSFRVQQLDVRVETKTLDNVFLTAGVSVQYQVLREKVFDAYYALTNPTQQITSHVFDVLRSELPSLELDAVFEAKEELALTVKNALAETMTNYGYQIVQVLITDLDPDERVKDAMNEINSSKRMKYAAAEKAEGDKILQVKAAEAEAESKYLSGVGVSKQRKAIVDGLRSSIVDFSSNVQGAGTKDVMDLLLLTQYFDMIQNVGSAPHCKTTFVP 259          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: OEU11005.1 (Band_7-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 301.6 bits (771), Expect = 2.700e-78
Identity = 152/259 (58.69%), Postives = 193/259 (74.52%), Query Frame = 0
Query:    8 CCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPHKYN 267
            CC  +ST EVG++E+  K++RL+ PG+ +   P E +  R+S R+ Q+D+R ETKT DNVF+   +S+QYQV+RE VF+A Y LTNP +QI A+VYDV+RATLP + LD AFEAK+ +A ++K +L     +YGY IL  L+TDL+PD RVK AMNEIN+SKR+K A  ERAEGDKI+Q+K AEA AE+ YLSGVGV++QRKAIVDGLRESIV FS        KDVMDLLLLTQYFDM+  VG++P   T FVP   N
Sbjct:    5 CCYTISTSEVGVIEKWGKFSRLSQPGLGIAICPMEQLVGRLSFRVQQIDVRVETKTLDNVFLTAVVSVQYQVLRENVFEAFYALTNPAQQITAHVYDVMRATLPTLELDAAFEAKEELASSVKNALSESFTSYGYQILQTLITDLDPDQRVKNAMNEINSSKRLKYAVAERAEGDKILQVKSAEAGAEALYLSGVGVSRQRKAIVDGLRESIVEFSSETTANA-KDVMDLLLLTQYFDMIRDVGSSPHCRTTFVPTSRN 262          
BLAST of NO10G00980 vs. NCBI_GenBank
Match: XP_002287135.1 (hypothetical protein THAPSDRAFT_268160 [Thalassiosira pseudonana CCMP1335] >EED94578.1 hypothetical protein THAPSDRAFT_268160 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 299.3 bits (765), Expect = 1.300e-77
Identity = 152/260 (58.46%), Postives = 193/260 (74.23%), Query Frame = 0
Query:    8 CCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPHKYNG 268
            CC CVST EV +VER  K++R   PG+ ++  PFE    +VS R+ QLD++ ETKT+DNVF+   +S+QYQVIRE V+ A Y LTN Q+QI A+VYDV+R+ LP + LD  FEAK+ +A A+K +L   M +YGY IL AL+TD++PD RVK AMNEIN++KR+K A  E+AEG KI+Q+K AEA AE+KYLSGVGVAKQRKAIVDGLR SIV FS  V G + KDVMDLLLL+QYFD +  VG+     T FVP  ++G
Sbjct:    5 CCVCVSTSEVVVVERLGKFDRFINPGLGVIVCPFEKYAGKVSFRVQQLDVKVETKTKDNVFLTTVVSVQYQVIRENVYQAFYSLTNTQQQITAHVYDVMRSQLPTLELDAVFEAKEELALAVKNALSETMSSYGYQILQALITDIDPDIRVKQAMNEINSAKRLKFAVAEKAEGQKILQVKSAEAEAEAKYLSGVGVAKQRKAIVDGLRSSIVDFSDGVKGASSKDVMDLLLLSQYFDCIRDVGHANHCKTTFVPSGHSG 264          
The following BLAST results are available for this feature:
BLAST of NO10G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25334.13.700e-13685.27hypersensitive-induced response protein [Nannochlo... [more]
XP_005853774.12.900e-11273.97hypersensitive-induced response protein [Nannochlo... [more]
CBN78487.11.900e-8758.10flagellar associated protein [Ectocarpus siliculos... [more]
CBN78488.11.900e-8758.25conserved unknown protein [Ectocarpus siliculosus][more]
EWM21496.13.400e-8159.46hypersensitive-induced response protein [Nannochlo... [more]
XP_002179523.13.800e-8059.14predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX22592.13.800e-8060.85hypothetical protein FisN_14Hh224 [Fistulifera sol... [more]
GAX10707.12.400e-7960.47hypothetical protein FisN_14Lh224 [Fistulifera sol... [more]
OEU11005.12.700e-7858.69Band_7-domain-containing protein [Fragilariopsis c... [more]
XP_002287135.11.300e-7758.46hypothetical protein THAPSDRAFT_268160 [Thalassios... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000967NSK000967Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00980.1NO10G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625341gene_4120Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100196g11gene5174Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00980.1NO10G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00980 ID=NO10G00980|Name=NO10G00980|organism=Nannochloropsis oceanica|type=gene|length=2232bp
ATGGGGGACACGTCTTGCTTCTGCTGCGGCTGCGTCTCGACGGGCGAAGT
CGGCATTGTCGAGCGCAATTGCAAGTACAACAGGCTTGCCATGCCGGGCA
TCACGCTAATGTGCTGGCCCTTCGAGgtcagtaagctgctttgttctgtg
atgggaagggagggggcggaggaagacttgggcagggcagattctattct
gcagtttcaatcattattgctagggattgcatgtgtataacccctatatt
tcctttcgtaacggatcgtctcttatacgcttaaagctcgccaaggatgc
ttgggctcgggatcaccgggtaatactgtttttcccctcgttgagtttcc
tcggatttctcctcattccttctctgtcgagtaccgtcactttattgcga
tccatccgcattatccataccctcctcatttccttcgttcttcccctctt
tttcaaaatagGGCATGCGTTCTCGCGTCTCCCTCCGGATCATGCAGCTG
GACATAAGGGCCGAGACCAAGACGCGTGACAACGTCTTCGTCATGGTGTA
CATCTCCATCCAGTACCAGgcacgtactcgccagaatcccacaacctttc
actgtcggagtttccttcacagcctctcagagtttgagcggggaaaataa
attgtgcctgtttctcctcatacttcttcttcttagtcatgctgttctat
cgtacagcctttcagtgtacgagtgagggatatcaaccttgtcttttccc
ttttgcttcttcttcgtcattctgttctcaagcctcgtctttcctttaaa
tcacttcccgtgggcactgtcctccttcctacagGTTATCCGGGAGAAGG
TTTTTGATGCCGTCTATCGCCTCACCAACCCTCAGgtatgtacatataga
catacatcgacgtcccttccccctgttttcaatcctcccccttccttccc
tccctcctttctcttcaatccatctacatcctcccccttccttccctccc
tccttgcttttcaatccatctacatcctcccccttcattccctccctcct
ttgtcttctaactatttccacgtgcacgcatcgactcgccctccctcttc
tctcttccactcctccccccccttccctcagGAGCAAATCCGCGCCTACG
TCTACGACGTCGTCCGTGCCACCCTCCCTCGCATGCTGCTCGACGACGCA
TTCGAAGCCAAGGATCACATTGCCCACGCCATCAAGACCTCCCTCCAGAC
CTGCATGGGCACATACGGTTACTCCATCCTCgtacgtctctctgcccacc
ctcccttctttcttcccttcctcccttcctgccaccttccatttttacct
tatttcttcctttctgccgccctctctttttccttgtcccccttacttca
tcctacttgccattgtcctggagccatctgcatcgtccaccagctctcac
cctccttccctccctccctcccctcgtccagAACGCCCTCGTCACGGACC
TCGAGCCCGACCCGCGGGTCAAGGGAGCCATGAATGAAATCAATGCCAGC
AAGAGGATGAAGGAAGCGGgtacgtgtcacagaggaagaagatgaagaag
gaagatgatcagacaccgaaaactgccatcccccctcttacattttccct
ttctccctcctacacctttcctcccccacccacctcatcaacgaatttta
ccccatccctacacccgcacacttatttacaaagCGAGGGAGCGCGCAGA
GGGTGACAAAATCGTACAAATTAAAATCGCCGAGGCCAACGCCGAGAGCA
AGTACCTGAGCGGGGTGGGGGTGGCCAAGCAGAGGAAGGCTATCGTGGAC
GGATTGCGCGAAAGCATCGTGGGGTTCAGTGGCAACGTACCCGGAACAAC
ACCCAAGGACGTGATGGACTTACTGTTGTTGACGCAGgtagggagggagg
gaggaagaaagagggagggaaggagggagggctctttttttttccttatg
gggtggacttagcgtcgattttcatgttacttccttactctcctctccac
cctccctccctccctagTACTTTGACATGCTTAACATGGTGGGCAACAAC
CCGTCCACTACAACCGTCTTCGTCCCGCACAAGTACAACGGCGAAGGAGG
GAGGGAGGGCGGGAAGGAAGACGTGTCAGGTTTGGTGAGGGATGGGGTAA
TGCAGGCGCAGAGTCGGTTGATTAGGCGATGA
back to top

protein sequence of NO10G00980.1

>NO10G00980.1-protein ID=NO10G00980.1-protein|Name=NO10G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MGDTSCFCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSL
RIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRA
YVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVT
DLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLS
GVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMV
GNNPSTTTVFVPHKYNGEGGREGGKEDVSGLVRDGVMQAQSRLIRR*
back to top
Synonyms
Publications