NO10G00980.1, NO10G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00980.1
Unique NameNO10G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length891
Alignment locationchr10:303851..306082 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:303851..306082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00980.1 vs.
Match: EWM25334.1 (hypersensitive-induced response protein [Nannochloropsis gaditana])

HSP 1 Score: 493.8 bits (1270), Expect = 3.700e-136
Identity = 249/292 (85.27%), Postives = 269/292 (92.12%), Query Frame = 0 
Query:    1 MGDTSCFCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSLRIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVTDLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLSGVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMVGNNPSTTTVFVPHKYNGEGGREGGKEDVSGLVRDGVMQAQSR 293
            MG+ SC CC CVSTGEVG+VERNCKYNRL +PGITLMCWPFE M+SRVSLRIMQLDIRAETKT+DNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRM LD+AFEAKD IAHA+K SLQTCMGTYGYSILNALVTDLEPD RVK AMNEINASKR+KEAARERAEG+KIVQ+KIAEANAESKYLSGVGVAKQRKAIVDGLRESI+GFSGNVPGTT KDVMDL+LLTQYFDMLN+VGNNPST TVF+PHK       + G+E+V   VR+G++QAQSR
Sbjct:    1 MGE-SCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHK---PALAQNGEEEVGDQVRNGMLQAQSR 288
The following BLAST results are available for this feature:
BLAST of NO10G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25334.13.700e-13685.27hypersensitive-induced response protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00980NO10G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00980.1NO10G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00980.1.cds1NO10G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00980.1.cds2NO10G00980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00980.1.cds3NO10G00980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00980.1.cds4NO10G00980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00980.1.cds5NO10G00980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00980.1.cds6NO10G00980.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00980.1.cds7NO10G00980.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00980.1 ID=NO10G00980.1|Name=NO10G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
ATGGGGGACACGTCTTGCTTCTGCTGCGGCTGCGTCTCGACGGGCGAAGT
CGGCATTGTCGAGCGCAATTGCAAGTACAACAGGCTTGCCATGCCGGGCA
TCACGCTAATGTGCTGGCCCTTCGAGGGCATGCGTTCTCGCGTCTCCCTC
CGGATCATGCAGCTGGACATAAGGGCCGAGACCAAGACGCGTGACAACGT
CTTCGTCATGGTGTACATCTCCATCCAGTACCAGGTTATCCGGGAGAAGG
TTTTTGATGCCGTCTATCGCCTCACCAACCCTCAGGAGCAAATCCGCGCC
TACGTCTACGACGTCGTCCGTGCCACCCTCCCTCGCATGCTGCTCGACGA
CGCATTCGAAGCCAAGGATCACATTGCCCACGCCATCAAGACCTCCCTCC
AGACCTGCATGGGCACATACGGTTACTCCATCCTCAACGCCCTCGTCACG
GACCTCGAGCCCGACCCGCGGGTCAAGGGAGCCATGAATGAAATCAATGC
CAGCAAGAGGATGAAGGAAGCGGCGAGGGAGCGCGCAGAGGGTGACAAAA
TCGTACAAATTAAAATCGCCGAGGCCAACGCCGAGAGCAAGTACCTGAGC
GGGGTGGGGGTGGCCAAGCAGAGGAAGGCTATCGTGGACGGATTGCGCGA
AAGCATCGTGGGGTTCAGTGGCAACGTACCCGGAACAACACCCAAGGACG
TGATGGACTTACTGTTGTTGACGCAGTACTTTGACATGCTTAACATGGTG
GGCAACAACCCGTCCACTACAACCGTCTTCGTCCCGCACAAGTACAACGG
CGAAGGAGGGAGGGAGGGCGGGAAGGAAGACGTGTCAGGTTTGGTGAGGG
ATGGGGTAATGCAGGCGCAGAGTCGGTTGATTAGGCGATGA
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protein sequence of NO10G00980.1

>NO10G00980.1-protein ID=NO10G00980.1-protein|Name=NO10G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MGDTSCFCCGCVSTGEVGIVERNCKYNRLAMPGITLMCWPFEGMRSRVSL
RIMQLDIRAETKTRDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRA
YVYDVVRATLPRMLLDDAFEAKDHIAHAIKTSLQTCMGTYGYSILNALVT
DLEPDPRVKGAMNEINASKRMKEAARERAEGDKIVQIKIAEANAESKYLS
GVGVAKQRKAIVDGLRESIVGFSGNVPGTTPKDVMDLLLLTQYFDMLNMV
GNNPSTTTVFVPHKYNGEGGREGGKEDVSGLVRDGVMQAQSRLIRR*
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mRNA from alignment at chr10:303851..306082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00980.1 ID=NO10G00980.1|Name=NO10G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp|location=Sequence derived from alignment at chr10:303851..306082+ (Nannochloropsis oceanica)
ATGGGGGACACGTCTTGCTTCTGCTGCGGCTGCGTCTCGACGGGCGAAGT
CGGCATTGTCGAGCGCAATTGCAAGTACAACAGGCTTGCCATGCCGGGCA
TCACGCTAATGTGCTGGCCCTTCGAGGTCAGTAAGCTGCTTTGTTCTGTG
ATGGGAAGGGAGGGGGCGGAGGAAGACTTGGGCAGGGCAGATTCTATTCT
GCAGTTTCAATCATTATTGCTAGGGATTGCATGTGTATAACCCCTATATT
TCCTTTCGTAACGGATCGTCTCTTATACGCTTAAAGCTCGCCAAGGATGC
TTGGGCTCGGGATCACCGGGTAATACTGTTTTTCCCCTCGTTGAGTTTCC
TCGGATTTCTCCTCATTCCTTCTCTGTCGAGTACCGTCACTTTATTGCGA
TCCATCCGCATTATCCATACCCTCCTCATTTCCTTCGTTCTTCCCCTCTT
TTTCAAAATAGGGCATGCGTTCTCGCGTCTCCCTCCGGATCATGCAGCTG
GACATAAGGGCCGAGACCAAGACGCGTGACAACGTCTTCGTCATGGTGTA
CATCTCCATCCAGTACCAGGCACGTACTCGCCAGAATCCCACAACCTTTC
ACTGTCGGAGTTTCCTTCACAGCCTCTCAGAGTTTGAGCGGGGAAAATAA
ATTGTGCCTGTTTCTCCTCATACTTCTTCTTCTTAGTCATGCTGTTCTAT
CGTACAGCCTTTCAGTGTACGAGTGAGGGATATCAACCTTGTCTTTTCCC
TTTTGCTTCTTCTTCGTCATTCTGTTCTCAAGCCTCGTCTTTCCTTTAAA
TCACTTCCCGTGGGCACTGTCCTCCTTCCTACAGGTTATCCGGGAGAAGG
TTTTTGATGCCGTCTATCGCCTCACCAACCCTCAGGTATGTACATATAGA
CATACATCGACGTCCCTTCCCCCTGTTTTCAATCCTCCCCCTTCCTTCCC
TCCCTCCTTTCTCTTCAATCCATCTACATCCTCCCCCTTCCTTCCCTCCC
TCCTTGCTTTTCAATCCATCTACATCCTCCCCCTTCATTCCCTCCCTCCT
TTGTCTTCTAACTATTTCCACGTGCACGCATCGACTCGCCCTCCCTCTTC
TCTCTTCCACTCCTCCCCCCCCTTCCCTCAGGAGCAAATCCGCGCCTACG
TCTACGACGTCGTCCGTGCCACCCTCCCTCGCATGCTGCTCGACGACGCA
TTCGAAGCCAAGGATCACATTGCCCACGCCATCAAGACCTCCCTCCAGAC
CTGCATGGGCACATACGGTTACTCCATCCTCGTACGTCTCTCTGCCCACC
CTCCCTTCTTTCTTCCCTTCCTCCCTTCCTGCCACCTTCCATTTTTACCT
TATTTCTTCCTTTCTGCCGCCCTCTCTTTTTCCTTGTCCCCCTTACTTCA
TCCTACTTGCCATTGTCCTGGAGCCATCTGCATCGTCCACCAGCTCTCAC
CCTCCTTCCCTCCCTCCCTCCCCTCGTCCAGAACGCCCTCGTCACGGACC
TCGAGCCCGACCCGCGGGTCAAGGGAGCCATGAATGAAATCAATGCCAGC
AAGAGGATGAAGGAAGCGGGTACGTGTCACAGAGGAAGAAGATGAAGAAG
GAAGATGATCAGACACCGAAAACTGCCATCCCCCCTCTTACATTTTCCCT
TTCTCCCTCCTACACCTTTCCTCCCCCACCCACCTCATCAACGAATTTTA
CCCCATCCCTACACCCGCACACTTATTTACAAAGCGAGGGAGCGCGCAGA
GGGTGACAAAATCGTACAAATTAAAATCGCCGAGGCCAACGCCGAGAGCA
AGTACCTGAGCGGGGTGGGGGTGGCCAAGCAGAGGAAGGCTATCGTGGAC
GGATTGCGCGAAAGCATCGTGGGGTTCAGTGGCAACGTACCCGGAACAAC
ACCCAAGGACGTGATGGACTTACTGTTGTTGACGCAGGTAGGGAGGGAGG
GAGGAAGAAAGAGGGAGGGAAGGAGGGAGGGCTCTTTTTTTTTCCTTATG
GGGTGGACTTAGCGTCGATTTTCATGTTACTTCCTTACTCTCCTCTCCAC
CCTCCCTCCCTCCCTAGTACTTTGACATGCTTAACATGGTGGGCAACAAC
CCGTCCACTACAACCGTCTTCGTCCCGCACAAGTACAACGGCGAAGGAGG
GAGGGAGGGCGGGAAGGAAGACGTGTCAGGTTTGGTGAGGGATGGGGTAA
TGCAGGCGCAGAGTCGGTTGATTAGGCGATGA
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Coding sequence (CDS) from alignment at chr10:303851..306082+

>NO10G00980.1 ID=NO10G00980.1|Name=NO10G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr10:303851..306082+ (Nannochloropsis oceanica)
ATGGGGGACACGTCTTGCTTCTGCTGCGGCTGCGTCTCGACGGGCGAAGT
CGGCATTGTCGAGCGCAATTGCAAGTACAACAGGCTTGCCATGCCGGGCA
TCACGCTAATGTGCTGGCCCTTCGAGGGCATGCGTTCTCGCGTCTCCCTC
CGGATCATGCAGCTGGACATAAGGGCCGAGACCAAGACGCGTGACAACGT
CTTCGTCATGGTGTACATCTCCATCCAGTACCAGGTTATCCGGGAGAAGG
TTTTTGATGCCGTCTATCGCCTCACCAACCCTCAGGAGCAAATCCGCGCC
TACGTCTACGACGTCGTCCGTGCCACCCTCCCTCGCATGCTGCTCGACGA
CGCATTCGAAGCCAAGGATCACATTGCCCACGCCATCAAGACCTCCCTCC
AGACCTGCATGGGCACATACGGTTACTCCATCCTCAACGCCCTCGTCACG
GACCTCGAGCCCGACCCGCGGGTCAAGGGAGCCATGAATGAAATCAATGC
CAGCAAGAGGATGAAGGAAGCGGCGAGGGAGCGCGCAGAGGGTGACAAAA
TCGTACAAATTAAAATCGCCGAGGCCAACGCCGAGAGCAAGTACCTGAGC
GGGGTGGGGGTGGCCAAGCAGAGGAAGGCTATCGTGGACGGATTGCGCGA
AAGCATCGTGGGGTTCAGTGGCAACGTACCCGGAACAACACCCAAGGACG
TGATGGACTTACTGTTGTTGACGCAGTACTTTGACATGCTTAACATGGTG
GGCAACAACCCGTCCACTACAACCGTCTTCGTCCCGCACAAGTACAACGG
CGAAGGAGGGAGGGAGGGCGGGAAGGAAGACGTGTCAGGTTTGGTGAGGG
ATGGGGTAATGCAGGCGCAGAGTCGGTTGATTAGGCGATGA
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Synonyms
Publications