NO10G00870, NO10G00870 (gene) Nannochloropsis oceanica

Overview
NameNO10G00870
Unique NameNO10G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1353
Alignment locationchr10:277861..279213 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:277861..279213 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G00870 vs. NCBI_GenBank
Match: EWM25309.1 (hypothetical protein Naga_100135g13 [Nannochloropsis gaditana])

HSP 1 Score: 262.3 bits (669), Expect = 1.500e-66
Identity = 135/159 (84.91%), Postives = 146/159 (91.82%), Query Frame = 0
Query:   85 IPGKMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRATPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMADAEILQLMARFQKLSQEAGIDPSMFPPPPGM 244
            +PGKMKV EIKAELDLRGVT AGV +R++LE LLLKAR+EGKARPEILDTFN+QRE EE R G+  PDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKD + +QKYMADAE+LQLMARFQKLS EAG+DPS FPPPPGM
Sbjct:   80 VPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGK-KPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQLMARFQKLSAEAGLDPSKFPPPPGM 237          
BLAST of NO10G00870 vs. NCBI_GenBank
Match: CBJ32476.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 111.3 bits (277), Expect = 4.300e-21
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 0
Query:   88 KMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQ----REDEEKRAGRATPDFDWDAAK---AGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMADAEILQLMARFQ 225
            KM+  EIKAELD+RGV Y G+FE+ +L   L++AR  G+A P I+D FN++    R D E+ AG A    + +  K   A DG LPGG+ PE L K+ S+ E+M +M NP+LQE+MK VM+   E M++   D E  +L+ + +
Sbjct:   95 KMRASEIKAELDMRGVGYTGIFEKDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFADDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLE 238          
BLAST of NO10G00870 vs. NCBI_GenBank
Match: KOO21548.1 (conserved unknown protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 105.9 bits (263), Expect = 1.800e-19
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 0
Query:   89 MKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRATP--------DFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYM-ADAEILQLMARFQKL 227
            MKV EIKAELDLR V + G+FE+ +L  +L KAR EG+A P ++D FN    ++   A  ATP        D D D A A DG LPGG+ P+ LQ  T   E+M ++ NP+LQ+LM+ +M+   +   + + +DAE   L++RFQ L
Sbjct:  272 MKVSEIKAELDLRKVKWDGLFEKEELAKVLAKARREGRADPLLIDQFNTMSVEQ---AWEATPQTTSEPAADVDLDEATAADGTLPGGMSPDMLQAATQDPEIMALLRNPKLQDLMRKMMAAGPQAASEMLSSDAEARMLLSRFQAL 415          
BLAST of NO10G00870 vs. NCBI_GenBank
Match: XP_005761135.1 (hypothetical protein EMIHUDRAFT_371912 [Emiliania huxleyi CCMP1516] >XP_005768960.1 hypothetical protein EMIHUDRAFT_370338 [Emiliania huxleyi CCMP1516] >EOD08706.1 hypothetical protein EMIHUDRAFT_371912 [Emiliania huxleyi CCMP1516] >EOD16531.1 hypothetical protein EMIHUDRAFT_370338 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 105.1 bits (261), Expect = 3.100e-19
Identity = 59/140 (42.14%), Postives = 88/140 (62.86%), Query Frame = 0
Query:   88 KMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRATPDFDWDA---AKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMADAEILQLMARFQ 225
            +M+V E+KAELDLR  +Y GV E+ +L  +L  AR +G A P+I+D+FN+   +    A    P  D DA   A A DG LPGG+ PE L KLT   E+M ++ NP++Q++MK VMS   E   + MAD ++ +++ +F+
Sbjct:   57 RMRVSELKAELDLRKQSYEGVMEKDELARMLADARSQGLADPDIVDSFNKANLE---NAYNPQPAVDPDAVAEAVASDGGLPGGMSPETLMKLTQDPELMAMLRNPKMQDVMKKVMSSGPEAAAEMMADPDVAEMLEKFK 193          
BLAST of NO10G00870 vs. NCBI_GenBank
Match: XP_002292312.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90287.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 94.7 bits (234), Expect = 4.200e-16
Identity = 53/146 (36.30%), Postives = 87/146 (59.59%), Query Frame = 0
Query:   84 AIPGKMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRA--TPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMA-DAEILQLMARFQKL 227
            ++PG+MK+ EIK+ELDLR V Y   F+R  LEI L +AR  GKA P ++D FN++  +   +   A    D   ++A  GDG LPGG+ P+ L+ + S  E++ ++ +P++QE+MK VM    + ++  M  D E  + + +   +
Sbjct:   66 SLPGQMKISEIKSELDLRKVNYNDCFDREALEIRLNEARCSGKADPSLIDEFNRRNLEANVKGEDALEVTDNMLESAVGGDGTLPGGLPPDMLKSMMSDPELVNMLRSPKMQEVMKLVMEGGQDALEDAMTNDKEAYECVTKLNSI 211          
BLAST of NO10G00870 vs. NCBI_GenBank
Match: GAX29181.1 (hypothetical protein FisN_28Lh010 [Fistulifera solaris])

HSP 1 Score: 87.8 bits (216), Expect = 5.100e-14
Identity = 52/136 (38.24%), Postives = 83/136 (61.03%), Query Frame = 0
Query:   86 PGKMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQR---EDEEKRAGRATPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMADAEILQ 219
            PG M+V EIKAELDLR ++YA  F++  L   L  AR +G A P IL+ FN+Q+   + +  +     PD D +AA A DG +PGG+ P+  QKL ++ E+M ++ + ++QE M  +M+   + ++K + +   LQ
Sbjct:   67 PGMMRVSEIKAELDLRKISYADCFDKESLVERLQGARAKGLADPSILEKFNRQKLEADFDPSKKVEIQPD-DIEAAVANDGTIPGGLTPDMFQKLIANPELMAMLQSTKMQEAMTLMMTGGRDELEKKLKEDPELQ 201          
BLAST of NO10G00870 vs. NCBI_GenBank
Match: GAX25542.1 (hypothetical protein FisN_28Hh010 [Fistulifera solaris])

HSP 1 Score: 87.4 bits (215), Expect = 6.700e-14
Identity = 51/136 (37.50%), Postives = 84/136 (61.76%), Query Frame = 0
Query:   86 PGKMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQR---EDEEKRAGRATPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMADAEILQ 219
            PG M+V EIKAELDLR ++Y   F++  L   L +AR++G A P IL+ FN+Q+   + +  +     PD D +AA A DG +PGG+ P+  QKL ++ E+M ++ + ++QE M  +M+   + ++K + +   LQ
Sbjct:   70 PGIMRVSEIKAELDLRKISYTDCFDKESLVERLQEARVKGLADPSILEKFNRQKLEADFDPSKKVEIQPD-DIEAALANDGTIPGGLTPDMFQKLIANPELMAMLQSTKMQEAMTLMMTGGRDELEKKLKEDPELQ 204          
BLAST of NO10G00870 vs. NCBI_GenBank
Match: EJK60682.1 (hypothetical protein THAOC_18921 [Thalassiosira oceanica])

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-13
Identity = 51/150 (34.00%), Postives = 87/150 (58.00%), Query Frame = 0
Query:   84 AIPGKMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRATPDFDW-DAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYM-ADAEILQLMARFQKLSQEAG 232
            A PG+M++ EIK+ELDL    Y   F+R  LE  L  AR +G+A   I+D FN++  +   +        D  D A AGDG LPGG+ PE L+ + +  +++ ++ +P++QE+MK VMS+  ++++  M  D ++ + + R  ++    G
Sbjct:   75 AEPGQMRISEIKSELDL----YVDCFDRQSLEERLNDARSQGRADESIIDEFNKRNLEASVKGDTFEVSDDMIDKATAGDGTLPGGMPPEMLKSMMNDPDLVNMLRSPKMQEIMKIVMSEGQQSLEDRMKEDKDVYECVQRLNQIMGRLG 220          
The following BLAST results are available for this feature:
BLAST of NO10G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM25309.11.500e-6684.91hypothetical protein Naga_100135g13 [Nannochlorops... [more]
CBJ32476.14.300e-2143.75conserved unknown protein [Ectocarpus siliculosus][more]
KOO21548.11.800e-1943.54conserved unknown protein [Chrysochromulina sp. CC... [more]
XP_005761135.13.100e-1942.14hypothetical protein EMIHUDRAFT_371912 [Emiliania ... [more]
XP_002292312.14.200e-1636.30predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX29181.15.100e-1438.24hypothetical protein FisN_28Lh010 [Fistulifera sol... [more]
GAX25542.16.700e-1437.50hypothetical protein FisN_28Hh010 [Fistulifera sol... [more]
EJK60682.11.500e-1334.00hypothetical protein THAOC_18921 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR014ngnoR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00870.1NO10G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586656gene_4133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100135g13gene5194Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00870.1NO10G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00870 ID=NO10G00870|Name=NO10G00870|organism=Nannochloropsis oceanica|type=gene|length=1353bp
AAGCATAAATAGGACCGTATTCACTCCTAGCCGGGGCACTTTGCACAAAA
CATCCACAGGAGCCAAGCCGACCCTCCAGCCGCCGTCAACCGTCCCAGCA
CAGCAGCAACACTCACTGCAATGCGCTGCCTCCTTGTCCCCGTGCTCGGG
GCCTTACTCGCCCTCAACCACGACAACGGCGCGTTCGCCTTCCTCATCTC
TGTCCCAGCGTCGTCGTCGGCACGCCTCGgtacgtatttggcccgtgcat
ggtatgtgcgtcaaacgtcagcagccctttttatccccctgcaaccctcc
ccacctcatccactcacagCCTCCCGTGCTGCCACGTCCCTCCTTCCATC
TACCTCTATCTACCACGCCTTCTATCAACGATATATCTCATTCAACTCCC
TGCTTGCTGCCGCCTCTGACGGTGCCGGTGCCTCCATGAATGACGACGAC
GACGAGGAGGCCATTCCGGGCAAGATGAAAGTAGGTGAGATCAAGGCCGA
GTTGGACTTGCGTGGCGTCACCTATGCCGGCGTTTTTGAACGATCAGATC
TAGAAATACTACTGCTTAAGGCACGGATGGAGGGGAAGGCGCGCCCGGAG
ATTTTAGACACGTTCAACCAGCAACGgtgggaatgatgggagggagggga
gaggggagaagaatgcatggtgtgggttcgtcggagtaggagagggagaa
ctcatggcagtatatttgtggcattcttcttatatttatttctacaatcc
ctcatataatcctacagCGAGGATGAGGAAAAACGGGCGGGACGGGCGAC
ACCGGACTTCGACTGGGACGCGGCCAAGGCAGGCGATGGAAACTTGCCCG
GTGGCGTCGACCCAGAGGCGCTTCAGAAATTGACAAGCAGTCAGGAAATG
ATGGAGATAATGAGTAATCCTCGCTTGCAGgtacgcttgcctgggaaaag
caagtaaaatgtgccggcttgtgacagaataacctcattttctcctgtca
gttttatagtagtggttggcttcagatacattaatcccacattccaattc
ttacagGAGCTCATGAAAGCCGTCATGTCCAAGGATAATGAAACCATGCA
GAAATATATGGCCGATGCTGAGATACTCCAGTTGATGGCTCGATTTCAAA
AGCTTTCCCAAGAGGCAGGTATTGACCCCAGCATGTTCCCGCCCCCGCCA
GGGATGAGTGATCGGGCGTGAGCAAGGGAGGGTAAAAGAAGGGATTACGT
TTGGTGCACGTTACAGCGCAAAAGAAAGGGAAGTAGAAGTCAAGTGAAAG
AATAACAAAGTGCTTTCACTAAGTAATGAAGAGGGAACGTACGTCTTGGT
ACA
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protein sequence of NO10G00870.1

>NO10G00870.1-protein ID=NO10G00870.1-protein|Name=NO10G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MRCLLVPVLGALLALNHDNGAFAFLISVPASSSARLASRAATSLLPSTSI
YHAFYQRYISFNSLLAAASDGAGASMNDDDDEEAIPGKMKVGEIKAELDL
RGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRAT
PDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVM
SKDNETMQKYMADAEILQLMARFQKLSQEAGIDPSMFPPPPGMSDRA*
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Synonyms
Publications