NO10G00870.1, NO10G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00870.1
Unique NameNO10G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length996
Alignment locationchr10:277861..279213 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:277861..279213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G00870.1 vs.
Match: EWM25309.1 (hypothetical protein Naga_100135g13 [Nannochloropsis gaditana])

HSP 1 Score: 275.4 bits (703), Expect = 1.700e-70
Identity = 160/236 (67.80%), Postives = 182/236 (77.12%), Query Frame = 0 
Query:    8 VLGALLALNHDNGAFAFLISVPASSSARLASRAATSLLPSTSIYHAFYQRYISFNSLLAAASDGAGASMNDDDDEEAIPGKMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRATPDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMADAEILQLMARFQKLSQEAGIDPSMFPPPPGM 244
            ++G L A      AF   +S+  +S A+L S      L +T  Y      +I   S L AA+D A    +D+DDEE +PGKMKV EIKAELDLRGVT AGV +R++LE LLLKAR+EGKARPEILDTFN+QRE EE R G+  PDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKD + +QKYMADAE+LQLMARFQKLS EAG+DPS FPPPPGM
Sbjct:    9 LIGLLGATGKGVAAFLLPVSLGPASDAQLPSPP----LATTLGYGIPRSPFIL--SPLYAAADTAMDGSSDEDDEEVVPGKMKVSEIKAELDLRGVTSAGVVDRAELEALLLKARIEGKARPEILDTFNEQREAEEARKGKK-PDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVMSKDQDVIQKYMADAEVLQLMARFQKLSAEAGLDPSKFPPPPGM 237
The following BLAST results are available for this feature:
BLAST of NO10G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25309.11.700e-7067.80hypothetical protein Naga_100135g13 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00870NO10G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00870.1NO10G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00870.1.cds1NO10G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00870.1.cds2NO10G00870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00870.1.cds3NO10G00870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00870.1.cds4NO10G00870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00870.1 ID=NO10G00870.1|Name=NO10G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=996bp
AAGCATAAATAGGACCGTATTCACTCCTAGCCGGGGCACTTTGCACAAAA
CATCCACAGGAGCCAAGCCGACCCTCCAGCCGCCGTCAACCGTCCCAGCA
CAGCAGCAACACTCACTGCAATGCGCTGCCTCCTTGTCCCCGTGCTCGGG
GCCTTACTCGCCCTCAACCACGACAACGGCGCGTTCGCCTTCCTCATCTC
TGTCCCAGCGTCGTCGTCGGCACGCCTCGCCTCCCGTGCTGCCACGTCCC
TCCTTCCATCTACCTCTATCTACCACGCCTTCTATCAACGATATATCTCA
TTCAACTCCCTGCTTGCTGCCGCCTCTGACGGTGCCGGTGCCTCCATGAA
TGACGACGACGACGAGGAGGCCATTCCGGGCAAGATGAAAGTAGGTGAGA
TCAAGGCCGAGTTGGACTTGCGTGGCGTCACCTATGCCGGCGTTTTTGAA
CGATCAGATCTAGAAATACTACTGCTTAAGGCACGGATGGAGGGGAAGGC
GCGCCCGGAGATTTTAGACACGTTCAACCAGCAACGCGAGGATGAGGAAA
AACGGGCGGGACGGGCGACACCGGACTTCGACTGGGACGCGGCCAAGGCA
GGCGATGGAAACTTGCCCGGTGGCGTCGACCCAGAGGCGCTTCAGAAATT
GACAAGCAGTCAGGAAATGATGGAGATAATGAGTAATCCTCGCTTGCAGG
AGCTCATGAAAGCCGTCATGTCCAAGGATAATGAAACCATGCAGAAATAT
ATGGCCGATGCTGAGATACTCCAGTTGATGGCTCGATTTCAAAAGCTTTC
CCAAGAGGCAGGTATTGACCCCAGCATGTTCCCGCCCCCGCCAGGGATGA
GTGATCGGGCGTGAGCAAGGGAGGGTAAAAGAAGGGATTACGTTTGGTGC
ACGTTACAGCGCAAAAGAAAGGGAAGTAGAAGTCAAGTGAAAGAATAACA
AAGTGCTTTCACTAAGTAATGAAGAGGGAACGTACGTCTTGGTACA
back to top

protein sequence of NO10G00870.1

>NO10G00870.1-protein ID=NO10G00870.1-protein|Name=NO10G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MRCLLVPVLGALLALNHDNGAFAFLISVPASSSARLASRAATSLLPSTSI
YHAFYQRYISFNSLLAAASDGAGASMNDDDDEEAIPGKMKVGEIKAELDL
RGVTYAGVFERSDLEILLLKARMEGKARPEILDTFNQQREDEEKRAGRAT
PDFDWDAAKAGDGNLPGGVDPEALQKLTSSQEMMEIMSNPRLQELMKAVM
SKDNETMQKYMADAEILQLMARFQKLSQEAGIDPSMFPPPPGMSDRA*
back to top

mRNA from alignment at chr10:277861..279213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00870.1 ID=NO10G00870.1|Name=NO10G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at chr10:277861..279213+ (Nannochloropsis oceanica)
AAGCATAAATAGGACCGTATTCACTCCTAGCCGGGGCACTTTGCACAAAA
CATCCACAGGAGCCAAGCCGACCCTCCAGCCGCCGTCAACCGTCCCAGCA
CAGCAGCAACACTCACTGCAATGCGCTGCCTCCTTGTCCCCGTGCTCGGG
GCCTTACTCGCCCTCAACCACGACAACGGCGCGTTCGCCTTCCTCATCTC
TGTCCCAGCGTCGTCGTCGGCACGCCTCGGTACGTATTTGGCCCGTGCAT
GGTATGTGCGTCAAACGTCAGCAGCCCTTTTTATCCCCCTGCAACCCTCC
CCACCTCATCCACTCACAGCCTCCCGTGCTGCCACGTCCCTCCTTCCATC
TACCTCTATCTACCACGCCTTCTATCAACGATATATCTCATTCAACTCCC
TGCTTGCTGCCGCCTCTGACGGTGCCGGTGCCTCCATGAATGACGACGAC
GACGAGGAGGCCATTCCGGGCAAGATGAAAGTAGGTGAGATCAAGGCCGA
GTTGGACTTGCGTGGCGTCACCTATGCCGGCGTTTTTGAACGATCAGATC
TAGAAATACTACTGCTTAAGGCACGGATGGAGGGGAAGGCGCGCCCGGAG
ATTTTAGACACGTTCAACCAGCAACGGTGGGAATGATGGGAGGGAGGGGA
GAGGGGAGAAGAATGCATGGTGTGGGTTCGTCGGAGTAGGAGAGGGAGAA
CTCATGGCAGTATATTTGTGGCATTCTTCTTATATTTATTTCTACAATCC
CTCATATAATCCTACAGCGAGGATGAGGAAAAACGGGCGGGACGGGCGAC
ACCGGACTTCGACTGGGACGCGGCCAAGGCAGGCGATGGAAACTTGCCCG
GTGGCGTCGACCCAGAGGCGCTTCAGAAATTGACAAGCAGTCAGGAAATG
ATGGAGATAATGAGTAATCCTCGCTTGCAGGTACGCTTGCCTGGGAAAAG
CAAGTAAAATGTGCCGGCTTGTGACAGAATAACCTCATTTTCTCCTGTCA
GTTTTATAGTAGTGGTTGGCTTCAGATACATTAATCCCACATTCCAATTC
TTACAGGAGCTCATGAAAGCCGTCATGTCCAAGGATAATGAAACCATGCA
GAAATATATGGCCGATGCTGAGATACTCCAGTTGATGGCTCGATTTCAAA
AGCTTTCCCAAGAGGCAGGTATTGACCCCAGCATGTTCCCGCCCCCGCCA
GGGATGAGTGATCGGGCGTGAGCAAGGGAGGGTAAAAGAAGGGATTACGT
TTGGTGCACGTTACAGCGCAAAAGAAAGGGAAGTAGAAGTCAAGTGAAAG
AATAACAAAGTGCTTTCACTAAGTAATGAAGAGGGAACGTACGTCTTGGT
ACA
back to top

Coding sequence (CDS) from alignment at chr10:277861..279213+

>NO10G00870.1 ID=NO10G00870.1|Name=NO10G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr10:277861..279213+ (Nannochloropsis oceanica)
ATGCGCTGCCTCCTTGTCCCCGTGCTCGGGGCCTTACTCGCCCTCAACCA
CGACAACGGCGCGTTCGCCTTCCTCATCTCTGTCCCAGCGTCGTCGTCGG
CACGCCTCGCCTCCCGTGCTGCCACGTCCCTCCTTCCATCTACCTCTATC
TACCACGCCTTCTATCAACGATATATCTCATTCAACTCCCTGCTTGCTGC
CGCCTCTGACGGTGCCGGTGCCTCCATGAATGACGACGACGACGAGGAGG
CCATTCCGGGCAAGATGAAAGTAGGTGAGATCAAGGCCGAGTTGGACTTG
CGTGGCGTCACCTATGCCGGCGTTTTTGAACGATCAGATCTAGAAATACT
ACTGCTTAAGGCACGGATGGAGGGGAAGGCGCGCCCGGAGATTTTAGACA
CGTTCAACCAGCAACGCGAGGATGAGGAAAAACGGGCGGGACGGGCGACA
CCGGACTTCGACTGGGACGCGGCCAAGGCAGGCGATGGAAACTTGCCCGG
TGGCGTCGACCCAGAGGCGCTTCAGAAATTGACAAGCAGTCAGGAAATGA
TGGAGATAATGAGTAATCCTCGCTTGCAGGAGCTCATGAAAGCCGTCATG
TCCAAGGATAATGAAACCATGCAGAAATATATGGCCGATGCTGAGATACT
CCAGTTGATGGCTCGATTTCAAAAGCTTTCCCAAGAGGCAGGTATTGACC
CCAGCATGTTCCCGCCCCCGCCAGGGATGAGTGATCGGGCGTGA
back to top
Synonyms
Publications