NO10G00510, NO10G00510 (gene) Nannochloropsis oceanica

Overview
NameNO10G00510
Unique NameNO10G00510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr10:180232..181125 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:180232..181125 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G00510 vs. NCBI_GenBank
Match: EWM25287.1 (hypothetical protein Naga_100403g4 [Nannochloropsis gaditana])

HSP 1 Score: 190.7 bits (483), Expect = 6.700e-45
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 0 
Query:  124 AANLPAEVIATAIVSLGKNANVDRLLLSSPS--------TSTTSSSVGENSVYQKQEASPALYVTARVGSRGRVLASIKLPLQSLPSPTFPALVQIKEGDIYAETPEVRHAIAREIQTSDLVLSARLDQDGRAATRGPQDLVGQATLYKFKSLDSAQWSRADIVLTGRGAFGEFVTG 293
            AANLP +VIATA++SL K AN+ R L S P+                          +SPALYVTARVG+RGRVLAS+K+P+     P FP  V +KEGDIYA+TP+ RH +A+ I++SDLVLSARLD DGRA+TR P+DLVGQ  +YKF+S+DSAQWSRADI LTGRGAFGE VTG
Sbjct:   10 AANLPPDVIATALLSLDKTANLARALSSPPTQMXXXXXXXXXXXXXXXXXXXXXXXXSSPALYVTARVGARGRVLASVKIPVPPSSPPAFPLEVHLKEGDIYADTPQARHDLAQAIRSSDLVLSARLDSDGRASTRDPRDLVGQGVVYKFQSVDSAQWSRADISLTGRGAFGELVTG 186
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BLAST of NO10G00510 vs. NCBI_GenBank
Match: XP_005778225.1 (hypothetical protein EMIHUDRAFT_205940 [Emiliania huxleyi CCMP1516] >EOD25796.1 hypothetical protein EMIHUDRAFT_205940 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.5 bits (184), Expect = 3.100e-10
Identity = 62/151 (41.06%), Postives = 78/151 (51.66%), Query Frame = 0 
Query:  151 SSPSTSTTSSSVGENSVYQKQEAS----PALYVTAR-VGSRGRVLASIKL-PLQSLPSPT---FPALVQIKEGDIYAETPEVRHAIAREIQTSDLVLSARLDQDGRAATRGPQDLVGQATLYKFKSLDSAQWSRADIVLTGRGAFGEFVTG 293
            SS +   + + V   +V QK +A+     ALYVTAR   S G + A  K  P+ S    T   FP    +   D+   T E R A A      DLV+SARLD DG AATRGP DLVG+ TL K  S  + +W  A + L GRG  G  +TG
Sbjct:   38 SSRAADASPTVVAVGTVLQKPDAAVPSGAALYVTARPASSEGALQAGAKTPPIASARFATPLLFPFEFVLTTDDL---TAEYRAADAASFNRLDLVISARLDGDGVAATRGPDDLVGRGTLSKRGSGRAEEWRPALVELQGRGLGGRLLTG 185
The following BLAST results are available for this feature:
BLAST of NO10G00510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25287.16.700e-4558.76hypothetical protein Naga_100403g4 [Nannochloropsi... [more]
XP_005778225.13.100e-1041.06hypothetical protein EMIHUDRAFT_205940 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00510.1NO10G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586787gene_4167Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100403g4gene5220Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00510.1NO10G00510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00510 ID=NO10G00510|Name=NO10G00510|organism=Nannochloropsis oceanica|type=gene|length=894bp
ATGCCTTCACCACCCTCGACCTCGGGGAGACTCGCAATGAAAGGGAGGAG
AAGATTACGATCCATGCCACCTTCCATTTTCGCTGTCATTGCCTTTTTCA
TAGTCCTTTTCTGCATCTCCACGACCGCCTTCGTGCTTCCGTCACCCTCC
AAATTCCTAGCTTCCCCCCCTGCGACACCATCCCAGCAGAACGATCTTGG
CCCAAACCCCTCTCTTCTGACTGCGTTGCGCCGCCTCCTTCAAAGTACCT
CCTCTCTCCTCCTCCTCTCTAGCGTCCCTTCTCTTGCCTTCACCGTATTT
CCTGCAACCTCCGCTGCCGTGCCAGCTCCTCAAACTACCACCATCATAGC
AGATACTCGAGAATCAGTAGCAGCAAATCTCCCCGCAGAAGTAATCGCCA
CCGCCATTGTCAGCCTGGGCAAGAACGCTAACGTCGACCGTCTCCTCCTT
TCTTCTCCCAGCACCAGCACCACCAGCAGCAGTGTCGGTGAAAATAGTGT
CTATCAAAAACAAGAGGCATCTCCCGCTCTTTACGTCACCGCTCGGGTTG
GAAGCCGGGGTCGCGTCCTCGCCTCCATCAAGCTGCCATTACAATCCCTC
CCCTCTCCTACATTTCCAGCCTTGGTCCAAATTAAAGAAGGGGACATATA
TGCGGAAACCCCTGAAGTCCGACATGCCATTGCACGAGAGATCCAAACCA
GTGACCTTGTCCTCTCTGCTCGTTTAGACCAAGACGGAAGAGCTGCTACC
CGAGGTCCCCAAGATTTGGTAGGACAAGCCACTCTCTATAAATTCAAGTC
ATTAGATTCGGCACAGTGGTCCAGGGCGGACATTGTCTTGACGGGCCGAG
GGGCGTTCGGGGAGTTTGTCACGGGCAGTGGGAAGGGGAAATGA
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protein sequence of NO10G00510.1

>NO10G00510.1-protein ID=NO10G00510.1-protein|Name=NO10G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MPSPPSTSGRLAMKGRRRLRSMPPSIFAVIAFFIVLFCISTTAFVLPSPS
KFLASPPATPSQQNDLGPNPSLLTALRRLLQSTSSLLLLSSVPSLAFTVF
PATSAAVPAPQTTTIIADTRESVAANLPAEVIATAIVSLGKNANVDRLLL
SSPSTSTTSSSVGENSVYQKQEASPALYVTARVGSRGRVLASIKLPLQSL
PSPTFPALVQIKEGDIYAETPEVRHAIAREIQTSDLVLSARLDQDGRAAT
RGPQDLVGQATLYKFKSLDSAQWSRADIVLTGRGAFGEFVTGSGKGK*
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Synonyms
Publications