NO10G00510.1, NO10G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00510.1
Unique NameNO10G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr10:180232..181125 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:180232..181125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00510.1 vs.
Match: EWM25287.1 (hypothetical protein Naga_100403g4 [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 8.500e-48
Identity = 109/177 (61.58%), Postives = 133/177 (75.14%), Query Frame = 0 
Query:  124 AANLPAEVIATAIVSLGKNANVDRLLLSSPST--STTSSSVGENSVYQKQE------ASPALYVTARVGSRGRVLASIKLPLQSLPSPTFPALVQIKEGDIYAETPEVRHAIAREIQTSDLVLSARLDQDGRAATRGPQDLVGQATLYKFKSLDSAQWSRADIVLTGRGAFGEFVTG 293
            AANLP +VIATA++SL K AN+ R L S P+   ST S +V   S    +       +SPALYVTARVG+RGRVLAS+K+P+     P FP  V +KEGDIYA+TP+ RH +A+ I++SDLVLSARLD DGRA+TR P+DLVGQ  +YKF+S+DSAQWSRADI LTGRGAFGE VTG
Sbjct:   10 AANLPPDVIATALLSLDKTANLARALSSPPTQMPSTISDTVSSTSAGSAESSPVASTSSPALYVTARVGARGRVLASVKIPVPPSSPPAFPLEVHLKEGDIYADTPQARHDLAQAIRSSDLVLSARLDSDGRASTRDPRDLVGQGVVYKFQSVDSAQWSRADISLTGRGAFGELVTG 186
The following BLAST results are available for this feature:
BLAST of NO10G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25287.18.500e-4861.58hypothetical protein Naga_100403g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00510NO10G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00510.1NO10G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00510.1.cds1NO10G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00510.1 ID=NO10G00510.1|Name=NO10G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGCCTTCACCACCCTCGACCTCGGGGAGACTCGCAATGAAAGGGAGGAG
AAGATTACGATCCATGCCACCTTCCATTTTCGCTGTCATTGCCTTTTTCA
TAGTCCTTTTCTGCATCTCCACGACCGCCTTCGTGCTTCCGTCACCCTCC
AAATTCCTAGCTTCCCCCCCTGCGACACCATCCCAGCAGAACGATCTTGG
CCCAAACCCCTCTCTTCTGACTGCGTTGCGCCGCCTCCTTCAAAGTACCT
CCTCTCTCCTCCTCCTCTCTAGCGTCCCTTCTCTTGCCTTCACCGTATTT
CCTGCAACCTCCGCTGCCGTGCCAGCTCCTCAAACTACCACCATCATAGC
AGATACTCGAGAATCAGTAGCAGCAAATCTCCCCGCAGAAGTAATCGCCA
CCGCCATTGTCAGCCTGGGCAAGAACGCTAACGTCGACCGTCTCCTCCTT
TCTTCTCCCAGCACCAGCACCACCAGCAGCAGTGTCGGTGAAAATAGTGT
CTATCAAAAACAAGAGGCATCTCCCGCTCTTTACGTCACCGCTCGGGTTG
GAAGCCGGGGTCGCGTCCTCGCCTCCATCAAGCTGCCATTACAATCCCTC
CCCTCTCCTACATTTCCAGCCTTGGTCCAAATTAAAGAAGGGGACATATA
TGCGGAAACCCCTGAAGTCCGACATGCCATTGCACGAGAGATCCAAACCA
GTGACCTTGTCCTCTCTGCTCGTTTAGACCAAGACGGAAGAGCTGCTACC
CGAGGTCCCCAAGATTTGGTAGGACAAGCCACTCTCTATAAATTCAAGTC
ATTAGATTCGGCACAGTGGTCCAGGGCGGACATTGTCTTGACGGGCCGAG
GGGCGTTCGGGGAGTTTGTCACGGGCAGTGGGAAGGGGAAATGA
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protein sequence of NO10G00510.1

>NO10G00510.1-protein ID=NO10G00510.1-protein|Name=NO10G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MPSPPSTSGRLAMKGRRRLRSMPPSIFAVIAFFIVLFCISTTAFVLPSPS
KFLASPPATPSQQNDLGPNPSLLTALRRLLQSTSSLLLLSSVPSLAFTVF
PATSAAVPAPQTTTIIADTRESVAANLPAEVIATAIVSLGKNANVDRLLL
SSPSTSTTSSSVGENSVYQKQEASPALYVTARVGSRGRVLASIKLPLQSL
PSPTFPALVQIKEGDIYAETPEVRHAIAREIQTSDLVLSARLDQDGRAAT
RGPQDLVGQATLYKFKSLDSAQWSRADIVLTGRGAFGEFVTGSGKGK*
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mRNA from alignment at chr10:180232..181125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00510.1 ID=NO10G00510.1|Name=NO10G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at chr10:180232..181125- (Nannochloropsis oceanica)
ATGCCTTCACCACCCTCGACCTCGGGGAGACTCGCAATGAAAGGGAGGAG
AAGATTACGATCCATGCCACCTTCCATTTTCGCTGTCATTGCCTTTTTCA
TAGTCCTTTTCTGCATCTCCACGACCGCCTTCGTGCTTCCGTCACCCTCC
AAATTCCTAGCTTCCCCCCCTGCGACACCATCCCAGCAGAACGATCTTGG
CCCAAACCCCTCTCTTCTGACTGCGTTGCGCCGCCTCCTTCAAAGTACCT
CCTCTCTCCTCCTCCTCTCTAGCGTCCCTTCTCTTGCCTTCACCGTATTT
CCTGCAACCTCCGCTGCCGTGCCAGCTCCTCAAACTACCACCATCATAGC
AGATACTCGAGAATCAGTAGCAGCAAATCTCCCCGCAGAAGTAATCGCCA
CCGCCATTGTCAGCCTGGGCAAGAACGCTAACGTCGACCGTCTCCTCCTT
TCTTCTCCCAGCACCAGCACCACCAGCAGCAGTGTCGGTGAAAATAGTGT
CTATCAAAAACAAGAGGCATCTCCCGCTCTTTACGTCACCGCTCGGGTTG
GAAGCCGGGGTCGCGTCCTCGCCTCCATCAAGCTGCCATTACAATCCCTC
CCCTCTCCTACATTTCCAGCCTTGGTCCAAATTAAAGAAGGGGACATATA
TGCGGAAACCCCTGAAGTCCGACATGCCATTGCACGAGAGATCCAAACCA
GTGACCTTGTCCTCTCTGCTCGTTTAGACCAAGACGGAAGAGCTGCTACC
CGAGGTCCCCAAGATTTGGTAGGACAAGCCACTCTCTATAAATTCAAGTC
ATTAGATTCGGCACAGTGGTCCAGGGCGGACATTGTCTTGACGGGCCGAG
GGGCGTTCGGGGAGTTTGTCACGGGCAGTGGGAAGGGGAAATGA
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Coding sequence (CDS) from alignment at chr10:180232..181125-

>NO10G00510.1 ID=NO10G00510.1|Name=NO10G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr10:180232..181125- (Nannochloropsis oceanica)
ATGCCTTCACCACCCTCGACCTCGGGGAGACTCGCAATGAAAGGGAGGAG
AAGATTACGATCCATGCCACCTTCCATTTTCGCTGTCATTGCCTTTTTCA
TAGTCCTTTTCTGCATCTCCACGACCGCCTTCGTGCTTCCGTCACCCTCC
AAATTCCTAGCTTCCCCCCCTGCGACACCATCCCAGCAGAACGATCTTGG
CCCAAACCCCTCTCTTCTGACTGCGTTGCGCCGCCTCCTTCAAAGTACCT
CCTCTCTCCTCCTCCTCTCTAGCGTCCCTTCTCTTGCCTTCACCGTATTT
CCTGCAACCTCCGCTGCCGTGCCAGCTCCTCAAACTACCACCATCATAGC
AGATACTCGAGAATCAGTAGCAGCAAATCTCCCCGCAGAAGTAATCGCCA
CCGCCATTGTCAGCCTGGGCAAGAACGCTAACGTCGACCGTCTCCTCCTT
TCTTCTCCCAGCACCAGCACCACCAGCAGCAGTGTCGGTGAAAATAGTGT
CTATCAAAAACAAGAGGCATCTCCCGCTCTTTACGTCACCGCTCGGGTTG
GAAGCCGGGGTCGCGTCCTCGCCTCCATCAAGCTGCCATTACAATCCCTC
CCCTCTCCTACATTTCCAGCCTTGGTCCAAATTAAAGAAGGGGACATATA
TGCGGAAACCCCTGAAGTCCGACATGCCATTGCACGAGAGATCCAAACCA
GTGACCTTGTCCTCTCTGCTCGTTTAGACCAAGACGGAAGAGCTGCTACC
CGAGGTCCCCAAGATTTGGTAGGACAAGCCACTCTCTATAAATTCAAGTC
ATTAGATTCGGCACAGTGGTCCAGGGCGGACATTGTCTTGACGGGCCGAG
GGGCGTTCGGGGAGTTTGTCACGGGCAGTGGGAAGGGGAAATGA
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Synonyms
Publications