NO10G00450, NO10G00450 (gene) Nannochloropsis oceanica

Overview
NameNO10G00450
Unique NameNO10G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1766
Alignment locationchr10:150850..152615 -

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Properties
Property NameValue
DescriptionThioredoxin domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:150850..152615 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO10G00450 vs. NCBI_GenBank
Match: EWM25280.1 (Thioredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 3.800e-62
Identity = 118/178 (66.29%), Postives = 132/178 (74.16%), Query Frame = 0
Query:   55 HGATTTTAAIPQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEGIPDPEVLKDWTNMMRGISSWHRWRKGGRKGVK 233
            HGA        +TK   +QKPVVSL+SEELLDHLE W TD+AIFFYAPWCPYCKLVGPYWDM+GEWH  Q   TPSLL+ RFDCEQDALA DIC+YMGVT YPTIQYLGYG YYQ          L+ +    P  NV+R VFFEG+PDPE+LKDWT MM+GIS WHRWR+G  K  K
Sbjct:   53 HGAAAGPFGGQKTK---KQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQ--TTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQN---------LLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGXXKRTK 216          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: XP_005855328.1 (hypothetical protein NGA_0137200, partial [Nannochloropsis gaditana CCMP526] >EKU21033.1 hypothetical protein NGA_0137200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 195.7 bits (496), Expect = 3.800e-46
Identity = 96/146 (65.75%), Postives = 106/146 (72.60%), Query Frame = 0
Query:   55 HGATTTTAAIPQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEG 201
            HGA        +TK   +QKPVVSL+SEELLDHLE W TD+AIFFYAPWCPYCKLVGPYWDM+GEWH  Q   TPSLL+ RFDCEQDALA DIC+YMGVT YPTIQYLGYG YYQ          L+ +    P  NV+R VFFEG
Sbjct:   53 HGAAAGPFGGQKTK---KQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQ--TTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQN---------LLSWLFRHPGSNVDRTVFFEG 184          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: CBJ26043.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.4 bits (233), Expect = 1.200e-15
Identity = 64/185 (34.59%), Postives = 93/185 (50.27%), Query Frame = 0
Query:   65 PQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFYAPWCPYCK-LVGPYWDMVGEWHAEQQP-PTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEG-IPDPEVLKDWTNMMRGISSWHRWRK-----GGRKGVKEGAVALEER 242
            P + +    +P+  L +  L  ++  WTTD A+ FYAPWC +CK L  P W+ V    AE+ P     L++A+F+CEQD  A   C  + +  YPT  + G G ++       LS +++  R   P  +   A F  G +   EVL  WT  M  IS ++R  +     GGR G K+ A A EER
Sbjct:   36 PTSASTSLAEPLAPLDTATLTSNMRHWTTDYAVMFYAPWCQHCKELFMPLWEDVSMQMAEEDPRGKRKLVLAKFNCEQDTTAAAFCQEINLQFYPTFMFFGAGKFHDHDP---LSGMVLGPR---PTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVMERLNVFGGRGGRKDRA-ASEER 213          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: EJK51843.1 (hypothetical protein THAOC_28951 [Thalassiosira oceanica])

HSP 1 Score: 92.0 bits (227), Expect = 5.900e-15
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 0
Query:   94 DVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVN---VERAVFFEG-IPDPEVLKDWTNMMRGISSWHRWRKGG-RKGVKEGAVAL 239
            D A+ FYA WC  C  + P WD +   H +       L++A FDCE+   A  +C   G+  YPT+ ++G G  +      FLS  L+    SA       + R V F+G    P+ + DW N+MRG+SSWH + + G  + ++ G + L
Sbjct:  112 DAAVMFYAQWCQNCHALAPSWDAIAT-HLDAGSERSKLVMALFDCEKSTDAARLCAAAGIKAYPTMMFVGSGAVHDT---DFLSRSLLGADRSAGPFGSSPLRRTVKFQGNWQYPDAVMDWVNLMRGLSSWHVFTESGPLRSIRNGILGL 257          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: XP_002290241.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91993.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 91.7 bits (226), Expect = 7.700e-15
Identity = 56/174 (32.18%), Postives = 83/174 (47.70%), Query Frame = 0
Query:   60 TTAAIPQTKTKRRQKPVVSLSSE---ELLDHLEGWTTDVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAP--KVNVERAVFFEG-IPDPEVLKDWTNMMRGISSWHRWRKGG 228
            T   +PQ  +        S S     EL+D   G   D AI FYA WC  C  V P WD +   H      +  L++A FDCE+D    ++CV  GV  YPT+ ++G G Y+   +     +++   + + P     + R V F+G     + + DW N+MRG+SSWH   + G
Sbjct:   67 TLKPLPQYPSHSSSSDATSSSQSGGAELVDEYIG--HDAAILFYAQWCNNCHAVAPSWDAIAT-HVNAGSRSSKLVMALFDCEKDTRHMELCVAAGVKAYPTMMFVGSGEYHDTDL--ITRSVVGKDKSAGPFGATTLRRTVKFQGNWQYGDQILDWVNIMRGLSSWHSMSESG 235          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: OEU20096.1 (hypothetical protein FRACYDRAFT_236164 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 88.2 bits (217), Expect = 8.500e-14
Identity = 51/148 (34.46%), Postives = 77/148 (52.03%), Query Frame = 0
Query:   85 LDHLEGWTTDVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPS-LLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVN---VERAVFFEG-IPDPEVLKDWTNMMRGISSWHRWRKGG 228
            LD   G+  D+A+ FYAPW  Y + + PYW+ +   H      T S L++A FDCE +A   ++C  + VTHYPT+ ++G GP+Y       ++ LL+    SA  +    V   V F+G     + + DW   M+ +S WH W   G
Sbjct:   68 LDEYPGY--DLAVMFYAPWDSYSQRLAPYWNQIA--HILDAGTTQSKLIMALFDCELNAAHMELCKSIKVTHYPTLMFIGSGPFYDTDP---ITKLLLGKDKSAGVMGESPVPNTVKFQGNWQYTDSILDWIRTMQALSRWHTWSTKG 208          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: CEM20333.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 84.7 bits (208), Expect = 9.400e-13
Identity = 54/171 (31.58%), Postives = 80/171 (46.78%), Query Frame = 0
Query:   76 VVSLSSEELLDHLEGWTTDVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEGIP-DPEVLKDWTNMMRGISSWHRWRK----------GGRKGVKEGA 236
            VV LS  EL  H+E W+ D+ +FFYAPW   CK + P  + +G ++ E++     + VA+F+C       ++C  +G+   PT  +   G     +  S L        L+   V   RA  F G P   E L+DWT +MR +S   RW +          GGR  + E A
Sbjct:   26 VVDLSVAELRHHMEVWSEDLVVFFYAPWSSDCKRLAPLTESLGRFYVERR--VKDIRVAKFNCVASKTHRELCDGLGIQSLPTFLFFASGKMRSFNRTSTL--------LAERDVKHHRASKFRGDPYIYESLRDWTRIMRWLSLGQRWARYVKQTTSDVLGGRTLIAENA 186          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: XP_002183926.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC44595.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.9 bits (180), Expect = 1.700e-9
Identity = 44/137 (32.12%), Postives = 64/137 (46.72%), Query Frame = 0
Query:   94 DVAIFFYAPWCPYCKLVGPYWDMVGE-WHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAV--FFEGIPDPEVLKDWTNMMRGISSWHR--WRK 226
            DV + FYA WC  C    P +D + +  HA  +     L++  FDCEQD   + +C   GVTHYPTI +L              S  ++     +PKV + + +  F       + + DW   +RG+S WHR  W K
Sbjct:   98 DVVVLFYAQWCRNCHAFAPLYDQMSKLLHAGTK--DSQLVMGLFDCEQDKAHSRVCSDAGVTHYPTIMFLS------------SSGQVLQRGRRSPKVPLPKHITTFRGNWQYGDAVMDWIKTLRGLSHWHRAGWGK 220          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: GAX18283.1 (hypothetical protein FisN_20Lh048 [Fistulifera solaris])

HSP 1 Score: 65.9 bits (159), Expect = 4.500e-7
Identity = 37/138 (26.81%), Postives = 61/138 (44.20%), Query Frame = 0
Query:   94 DVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEGIPDPEVLKDWTNMMRGISSWHR--WRKGGRK 230
            DV + +YA WC  C+ + P +  + E     +  + ++++  FDCE D     +C  +G+THYPT+QY+   P ++                +  K+      F       E + DW   M  +S WHR  W K  R+
Sbjct:   56 DVVVLYYAQWCTNCRALSPIYIRIAELLKAGEAKS-NIIMGYFDCEADYEHAVLCEQVGITHYPTLQYISLAPDHR-------------LPHTQKKLPSHVTQFPGNWQVGESILDWIRTMSFLSQWHRASWGKALRQ 179          
BLAST of NO10G00450 vs. NCBI_GenBank
Match: GAX23844.1 (hypothetical protein FisN_20Hh048 [Fistulifera solaris])

HSP 1 Score: 65.1 bits (157), Expect = 7.700e-7
Identity = 37/138 (26.81%), Postives = 61/138 (44.20%), Query Frame = 0
Query:   94 DVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEGIPDPEVLKDWTNMMRGISSWHR--WRKGGRK 230
            DV + +YA WC  C+ + P +  + E     +  + ++++  FDCE D     +C  +G+THYPT+QY+   P ++                +  K+      F       E + DW   M  +S WHR  W K  R+
Sbjct:   66 DVVVLYYAQWCQNCRSLSPMYIRIAEILKAGEAKS-NIIMGYFDCEADYEHAVLCEQVGITHYPTLQYISLAPDHR-------------LPHTQKKLPPHVTQFPGNWQVGESILDWIRTMSFLSQWHRASWGKALRQ 189          
The following BLAST results are available for this feature:
BLAST of NO10G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM25280.13.800e-6266.29Thioredoxin domain protein [Nannochloropsis gadita... [more]
XP_005855328.13.800e-4665.75hypothetical protein NGA_0137200, partial [Nannoch... [more]
CBJ26043.11.200e-1534.59conserved unknown protein [Ectocarpus siliculosus][more]
EJK51843.15.900e-1533.33hypothetical protein THAOC_28951 [Thalassiosira oc... [more]
XP_002290241.17.700e-1532.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU20096.18.500e-1434.46hypothetical protein FRACYDRAFT_236164 [Fragilario... [more]
CEM20333.19.400e-1331.58unnamed protein product [Vitrella brassicaformis C... [more]
XP_002183926.11.700e-932.12predicted protein, partial [Phaeodactylum tricornu... [more]
GAX18283.14.500e-726.81hypothetical protein FisN_20Lh048 [Fistulifera sol... [more]
GAX23844.17.700e-726.81hypothetical protein FisN_20Hh048 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00450.1NO10G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670346gene_4175Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101428g1gene5228Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00450.1NO10G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00450 ID=NO10G00450|Name=NO10G00450|organism=Nannochloropsis oceanica|type=gene|length=1766bp
ATGGAGCTAGCCTCCCCGTCAGCATCACCACTAACAACAGCGCGGAGGAG
AAGAAGGAGGAGAATAGGACGTCTTCTTGGCCCCTCTTCATCCTTTTCCG
CCTTCCGCCTTCCCCTCCTCCTCTGCCTCCTCTGCCTCCTCTGCTTCCTC
GCTGTTTCTAGCCACGGCGCAACCACTACCACAGCCGCCATCCCACAAAC
TAAAACAAAGAGGAGGCAAAAGCCCGTCGTTTCTCTTTCGTCGGAAGAGC
TGCTGGATCATTTGGAGGGATGGACAACGGACGTTGCCATCTTCTTTTAT
GCGCCCTGGTGCCCGTATTGCAAgtgagtgggaaaaagacggagggcggg
agggaggaagagagggagaaagagatgatataagggagggttgagtagac
atcacggatcatccacaaattcttacacgacctccccttccctccctacc
ttcctcctcacagGCTCGTCGGCCCTTACTGGGACATGGTGGGCGAATGG
CATGCCGAGCAACAACCCCCCACCCCGTCACTCCTCGTCGCTCGCTTCGA
CTGCGAGCAAGACGCCCTCGCCACGGATATCTGTGTGTACATGGGTGTCA
CGCATTACCCCACCATTCAATATTTAGGCTATGGCCCTTACTACCAACAG
AGTATCTGGTCGTTCTTGTCCAATTTATTAATTTATTTCCGTCTGTCGGC
CCCCAAGGTTAATGTGGAGAGGGCTGTATTCTTTGAGGGCATACCCGACC
CGGAAGTGCTGAAAGATTGGACAAACATGATGCGAGGGATTAGCAGCTGG
CATCGGTGGAGGAAGGGGGGGAGGAAGGGAGTGAAGGAGGGAGCGGTGGC
GTTGGAAGAACGGAAGGAGAGACGGAGGTTGGAAAGGGAGGTGGAGGAGT
TGAAGGATGAGAAGAGGTGGTTAGAGGCGGCCGCGAGGAAAGGGGGGAAG
GAAAGTGGAGTAGGCGGAGGGAGTGGGGGAGGGAAGAGTTTGTATGAGGA
GTGGTTTGGGCCGTCCGCTGCTGATGGTGTTAGTGCTGGTGGTGCTCCCG
CTGGGGGAGGAGGAGGGAAGAGAAAGGAGAAGTATGGCGGTTCGCCTTCT
CCCTATTCTTCTTCAAGAGGAAAAGACGAGGAAATGGATGATTCTCCCTG
GGCAGCAGCAACAGCAGCAGCGAAAGAAGCAGCAGCCACAGGAGAAGACG
AGGCACTAGAGAAATACTACCAGGAGCTGATGCGGAGTTTGGAGAGCGGG
GGGGGGGGAGGGGGGAAAGGAGGGGGGGAGGCGAATACACCGGAGGAGGT
GGAGGCTGCGTTGGAAAAAATGGCAGAGGAGATTTTGGGGCCTGTGACGG
GAGGGAGGGGGGGAGGAGACCCTTTCGAGGAGCTCGCCGAAGGAGGACTG
AGAGGAAATGAGACAGTGGTGGTGCTTGAATGTCTGGGGGACTTTCTCGG
TGATTATTGCAGGGAGGTGGCGGAGCAGGGGGGAATCGAGGGGGAAGGGG
AGGAGCCATTTTGTAAGCTGTTGCCGGGGTGTGTGAAGGACGGATTTGGA
AGGGTGGAGTGCAGGCCAGCGAGGTGTCCACTGAGGAAGGAAGGGTGCGA
AAGGATCAAGAATTGTTTGAGGGAGGGAGTGATGGGATTGTACGCACAGA
TGATGCCGGGGGAGGGAGGGAGGGTGGGAGGTAGGGAGGCAGGGGGAGGA
GGCGAGAAGGCGGGATCATCGTGGTGGGGGATGGGAGGAGGAGGAGGAGG
GGAGAAAGATTTGTAA
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protein sequence of NO10G00450.1

>NO10G00450.1-protein ID=NO10G00450.1-protein|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MELASPSASPLTTARRRRRRRIGRLLGPSSSFSAFRLPLLLCLLCLLCFL
AVSSHGATTTTAAIPQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFY
APWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVY
MGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEG
IPDPEVLKDWTNMMRGISSWHRWRKGGRKGVKEGAVALEERKERRRLERE
VEELKDEKRWLEAAARKGGKESGVGGGSGGGKSLYEEWFGPSAADGVSAG
GAPAGGGGGKRKEKYGGSPSPYSSSRGKDEEMDDSPWAAATAAAKEAAAT
GEDEALEKYYQELMRSLESGGGGGGKGGGEANTPEEVEAALEKMAEEILG
PVTGGRGGGDPFEELAEGGLRGNETVVVLECLGDFLGDYCREVAEQGGIE
GEGEEPFCKLLPGCVKDGFGRVECRPARCPLRKEGCERIKNCLREGVMGL
YAQMMPGEGGRVGGREAGGGGEKAGSSWWGMGGGGGGEKDL*
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Synonyms
Publications