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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:150850..152615 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00450.1 vs.
Match: EWM25280.1 (Thioredoxin domain protein [Nannochloropsis gaditana]) HSP 1 Score: 266.2 bits (679), Expect = 2.300e-67 Identity = 142/233 (60.94%), Postives = 160/233 (68.67%), Query Frame = 0
Query: 1 MELASPSASPLTTARRRRRRRIGRLLGPSSSFSAFRLPLLLCLLCLLCFLAVS-SHGATTTTAAIPQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEGIPDPEVLKDWTNMMRGISSWHRWRKGGRKGVK 233
ME +P P T RRRR RRIGRL G S + +P LL +L L S HGA +TK +QKPVVSL+SEELLDHLE W TD+AIFFYAPWCPYCKLVGPYWDM+GEWH Q TPSLL+ RFDCEQDALA DIC+YMGVT YPTIQYLGYG YYQ L+ + P NV+R VFFEG+PDPE+LKDWT MM+GIS WHRWR+G RK K
Sbjct: 1 MEAITPP-KPGTAWRRRRGRRIGRLYGHVSLSAV--IPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTK---KQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQ--TTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQN---------LLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTK 216
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00450.1 ID=NO10G00450.1|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp ATGGAGCTAGCCTCCCCGTCAGCATCACCACTAACAACAGCGCGGAGGAG AAGAAGGAGGAGAATAGGACGTCTTCTTGGCCCCTCTTCATCCTTTTCCG CCTTCCGCCTTCCCCTCCTCCTCTGCCTCCTCTGCCTCCTCTGCTTCCTC GCTGTTTCTAGCCACGGCGCAACCACTACCACAGCCGCCATCCCACAAAC TAAAACAAAGAGGAGGCAAAAGCCCGTCGTTTCTCTTTCGTCGGAAGAGC TGCTGGATCATTTGGAGGGATGGACAACGGACGTTGCCATCTTCTTTTAT GCGCCCTGGTGCCCGTATTGCAAGCTCGTCGGCCCTTACTGGGACATGGT GGGCGAATGGCATGCCGAGCAACAACCCCCCACCCCGTCACTCCTCGTCG CTCGCTTCGACTGCGAGCAAGACGCCCTCGCCACGGATATCTGTGTGTAC ATGGGTGTCACGCATTACCCCACCATTCAATATTTAGGCTATGGCCCTTA CTACCAACAGAGTATCTGGTCGTTCTTGTCCAATTTATTAATTTATTTCC GTCTGTCGGCCCCCAAGGTTAATGTGGAGAGGGCTGTATTCTTTGAGGGC ATACCCGACCCGGAAGTGCTGAAAGATTGGACAAACATGATGCGAGGGAT TAGCAGCTGGCATCGGTGGAGGAAGGGGGGGAGGAAGGGAGTGAAGGAGG GAGCGGTGGCGTTGGAAGAACGGAAGGAGAGACGGAGGTTGGAAAGGGAG GTGGAGGAGTTGAAGGATGAGAAGAGGTGGTTAGAGGCGGCCGCGAGGAA AGGGGGGAAGGAAAGTGGAGTAGGCGGAGGGAGTGGGGGAGGGAAGAGTT TGTATGAGGAGTGGTTTGGGCCGTCCGCTGCTGATGGTGTTAGTGCTGGT GGTGCTCCCGCTGGGGGAGGAGGAGGGAAGAGAAAGGAGAAGTATGGCGG TTCGCCTTCTCCCTATTCTTCTTCAAGAGGAAAAGACGAGGAAATGGATG ATTCTCCCTGGGCAGCAGCAACAGCAGCAGCGAAAGAAGCAGCAGCCACA GGAGAAGACGAGGCACTAGAGAAATACTACCAGGAGCTGATGCGGAGTTT GGAGAGCGGGGGGGGGGGAGGGGGGAAAGGAGGGGGGGAGGCGAATACAC CGGAGGAGGTGGAGGCTGCGTTGGAAAAAATGGCAGAGGAGATTTTGGGG CCTGTGACGGGAGGGAGGGGGGGAGGAGACCCTTTCGAGGAGCTCGCCGA AGGAGGACTGAGAGGAAATGAGACAGTGGTGGTGCTTGAATGTCTGGGGG ACTTTCTCGGTGATTATTGCAGGGAGGTGGCGGAGCAGGGGGGAATCGAG GGGGAAGGGGAGGAGCCATTTTGTAAGCTGTTGCCGGGGTGTGTGAAGGA CGGATTTGGAAGGGTGGAGTGCAGGCCAGCGAGGTGTCCACTGAGGAAGG AAGGGTGCGAAAGGATCAAGAATTGTTTGAGGGAGGGAGTGATGGGATTG TACGCACAGATGATGCCGGGGGAGGGAGGGAGGGTGGGAGGTAGGGAGGC AGGGGGAGGAGGCGAGAAGGCGGGATCATCGTGGTGGGGGATGGGAGGAG GAGGAGGAGGGGAGAAAGATTTGTAA back to topprotein sequence of NO10G00450.1 >NO10G00450.1-protein ID=NO10G00450.1-protein|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp MELASPSASPLTTARRRRRRRIGRLLGPSSSFSAFRLPLLLCLLCLLCFL AVSSHGATTTTAAIPQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFY APWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVY MGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEG IPDPEVLKDWTNMMRGISSWHRWRKGGRKGVKEGAVALEERKERRRLERE VEELKDEKRWLEAAARKGGKESGVGGGSGGGKSLYEEWFGPSAADGVSAG GAPAGGGGGKRKEKYGGSPSPYSSSRGKDEEMDDSPWAAATAAAKEAAAT GEDEALEKYYQELMRSLESGGGGGGKGGGEANTPEEVEAALEKMAEEILG PVTGGRGGGDPFEELAEGGLRGNETVVVLECLGDFLGDYCREVAEQGGIE GEGEEPFCKLLPGCVKDGFGRVECRPARCPLRKEGCERIKNCLREGVMGL YAQMMPGEGGRVGGREAGGGGEKAGSSWWGMGGGGGGEKDL* back to topmRNA from alignment at chr10:150850..152615- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00450.1 ID=NO10G00450.1|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1766bp|location=Sequence derived from alignment at chr10:150850..152615- (Nannochloropsis oceanica) ATGGAGCTAGCCTCCCCGTCAGCATCACCACTAACAACAGCGCGGAGGAG
AAGAAGGAGGAGAATAGGACGTCTTCTTGGCCCCTCTTCATCCTTTTCCG
CCTTCCGCCTTCCCCTCCTCCTCTGCCTCCTCTGCCTCCTCTGCTTCCTC
GCTGTTTCTAGCCACGGCGCAACCACTACCACAGCCGCCATCCCACAAAC
TAAAACAAAGAGGAGGCAAAAGCCCGTCGTTTCTCTTTCGTCGGAAGAGC
TGCTGGATCATTTGGAGGGATGGACAACGGACGTTGCCATCTTCTTTTAT
GCGCCCTGGTGCCCGTATTGCAAGTGAGTGGGAAAAAGACGGAGGGCGGG
AGGGAGGAAGAGAGGGAGAAAGAGATGATATAAGGGAGGGTTGAGTAGAC
ATCACGGATCATCCACAAATTCTTACACGACCTCCCCTTCCCTCCCTACC
TTCCTCCTCACAGGCTCGTCGGCCCTTACTGGGACATGGTGGGCGAATGG
CATGCCGAGCAACAACCCCCCACCCCGTCACTCCTCGTCGCTCGCTTCGA
CTGCGAGCAAGACGCCCTCGCCACGGATATCTGTGTGTACATGGGTGTCA
CGCATTACCCCACCATTCAATATTTAGGCTATGGCCCTTACTACCAACAG
AGTATCTGGTCGTTCTTGTCCAATTTATTAATTTATTTCCGTCTGTCGGC
CCCCAAGGTTAATGTGGAGAGGGCTGTATTCTTTGAGGGCATACCCGACC
CGGAAGTGCTGAAAGATTGGACAAACATGATGCGAGGGATTAGCAGCTGG
CATCGGTGGAGGAAGGGGGGGAGGAAGGGAGTGAAGGAGGGAGCGGTGGC
GTTGGAAGAACGGAAGGAGAGACGGAGGTTGGAAAGGGAGGTGGAGGAGT
TGAAGGATGAGAAGAGGTGGTTAGAGGCGGCCGCGAGGAAAGGGGGGAAG
GAAAGTGGAGTAGGCGGAGGGAGTGGGGGAGGGAAGAGTTTGTATGAGGA
GTGGTTTGGGCCGTCCGCTGCTGATGGTGTTAGTGCTGGTGGTGCTCCCG
CTGGGGGAGGAGGAGGGAAGAGAAAGGAGAAGTATGGCGGTTCGCCTTCT
CCCTATTCTTCTTCAAGAGGAAAAGACGAGGAAATGGATGATTCTCCCTG
GGCAGCAGCAACAGCAGCAGCGAAAGAAGCAGCAGCCACAGGAGAAGACG
AGGCACTAGAGAAATACTACCAGGAGCTGATGCGGAGTTTGGAGAGCGGG
GGGGGGGGAGGGGGGAAAGGAGGGGGGGAGGCGAATACACCGGAGGAGGT
GGAGGCTGCGTTGGAAAAAATGGCAGAGGAGATTTTGGGGCCTGTGACGG
GAGGGAGGGGGGGAGGAGACCCTTTCGAGGAGCTCGCCGAAGGAGGACTG
AGAGGAAATGAGACAGTGGTGGTGCTTGAATGTCTGGGGGACTTTCTCGG
TGATTATTGCAGGGAGGTGGCGGAGCAGGGGGGAATCGAGGGGGAAGGGG
AGGAGCCATTTTGTAAGCTGTTGCCGGGGTGTGTGAAGGACGGATTTGGA
AGGGTGGAGTGCAGGCCAGCGAGGTGTCCACTGAGGAAGGAAGGGTGCGA
AAGGATCAAGAATTGTTTGAGGGAGGGAGTGATGGGATTGTACGCACAGA
TGATGCCGGGGGAGGGAGGGAGGGTGGGAGGTAGGGAGGCAGGGGGAGGA
GGCGAGAAGGCGGGATCATCGTGGTGGGGGATGGGAGGAGGAGGAGGAGG
GGAGAAAGATTTGTAA back to topCoding sequence (CDS) from alignment at chr10:150850..152615- >NO10G00450.1 ID=NO10G00450.1|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr10:150850..152615- (Nannochloropsis oceanica) ATGGAGCTAGCCTCCCCGTCAGCATCACCACTAACAACAGCGCGGAGGAG AAGAAGGAGGAGAATAGGACGTCTTCTTGGCCCCTCTTCATCCTTTTCCG CCTTCCGCCTTCCCCTCCTCCTCTGCCTCCTCTGCCTCCTCTGCTTCCTC GCTGTTTCTAGCCACGGCGCAACCACTACCACAGCCGCCATCCCACAAAC TAAAACAAAGAGGAGGCAAAAGCCCGTCGTTTCTCTTTCGTCGGAAGAGC TGCTGGATCATTTGGAGGGATGGACAACGGACGTTGCCATCTTCTTTTAT GCGCCCTGGTGCCCGTATTGCAAGCTCGTCGGCCCTTACTGGGACATGGT GGGCGAATGGCATGCCGAGCAACAACCCCCCACCCCGTCACTCCTCGTCG CTCGCTTCGACTGCGAGCAAGACGCCCTCGCCACGGATATCTGTGTGTAC ATGGGTGTCACGCATTACCCCACCATTCAATATTTAGGCTATGGCCCTTA CTACCAACAGAGTATCTGGTCGTTCTTGTCCAATTTATTAATTTATTTCC GTCTGTCGGCCCCCAAGGTTAATGTGGAGAGGGCTGTATTCTTTGAGGGC ATACCCGACCCGGAAGTGCTGAAAGATTGGACAAACATGATGCGAGGGAT TAGCAGCTGGCATCGGTGGAGGAAGGGGGGGAGGAAGGGAGTGAAGGAGG GAGCGGTGGCGTTGGAAGAACGGAAGGAGAGACGGAGGTTGGAAAGGGAG GTGGAGGAGTTGAAGGATGAGAAGAGGTGGTTAGAGGCGGCCGCGAGGAA AGGGGGGAAGGAAAGTGGAGTAGGCGGAGGGAGTGGGGGAGGGAAGAGTT TGTATGAGGAGTGGTTTGGGCCGTCCGCTGCTGATGGTGTTAGTGCTGGT GGTGCTCCCGCTGGGGGAGGAGGAGGGAAGAGAAAGGAGAAGTATGGCGG TTCGCCTTCTCCCTATTCTTCTTCAAGAGGAAAAGACGAGGAAATGGATG ATTCTCCCTGGGCAGCAGCAACAGCAGCAGCGAAAGAAGCAGCAGCCACA GGAGAAGACGAGGCACTAGAGAAATACTACCAGGAGCTGATGCGGAGTTT GGAGAGCGGGGGGGGGGGAGGGGGGAAAGGAGGGGGGGAGGCGAATACAC CGGAGGAGGTGGAGGCTGCGTTGGAAAAAATGGCAGAGGAGATTTTGGGG CCTGTGACGGGAGGGAGGGGGGGAGGAGACCCTTTCGAGGAGCTCGCCGA AGGAGGACTGAGAGGAAATGAGACAGTGGTGGTGCTTGAATGTCTGGGGG ACTTTCTCGGTGATTATTGCAGGGAGGTGGCGGAGCAGGGGGGAATCGAG GGGGAAGGGGAGGAGCCATTTTGTAAGCTGTTGCCGGGGTGTGTGAAGGA CGGATTTGGAAGGGTGGAGTGCAGGCCAGCGAGGTGTCCACTGAGGAAGG AAGGGTGCGAAAGGATCAAGAATTGTTTGAGGGAGGGAGTGATGGGATTG TACGCACAGATGATGCCGGGGGAGGGAGGGAGGGTGGGAGGTAGGGAGGC AGGGGGAGGAGGCGAGAAGGCGGGATCATCGTGGTGGGGGATGGGAGGAG GAGGAGGAGGGGAGAAAGATTTGTAA back to top
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