NO10G00450.1, NO10G00450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00450.1
Unique NameNO10G00450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1626
Alignment locationchr10:150850..152615 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:150850..152615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G00450.1 vs.
Match: EWM25280.1 (Thioredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 266.2 bits (679), Expect = 2.300e-67
Identity = 142/233 (60.94%), Postives = 160/233 (68.67%), Query Frame = 0
Query:    1 MELASPSASPLTTARRRRRRRIGRLLGPSSSFSAFRLPLLLCLLCLLCFLAVS-SHGATTTTAAIPQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFYAPWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVYMGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEGIPDPEVLKDWTNMMRGISSWHRWRKGGRKGVK 233
            ME  +P   P T  RRRR RRIGRL G  S  +   +P LL +L     L  S  HGA        +TK   +QKPVVSL+SEELLDHLE W TD+AIFFYAPWCPYCKLVGPYWDM+GEWH  Q   TPSLL+ RFDCEQDALA DIC+YMGVT YPTIQYLGYG YYQ          L+ +    P  NV+R VFFEG+PDPE+LKDWT MM+GIS WHRWR+G RK  K
Sbjct:    1 MEAITPP-KPGTAWRRRRGRRIGRLYGHVSLSAV--IPFLLLVLGFFALLLPSLCHGAAAGPFGGQKTK---KQKPVVSLTSEELLDHLEEWNTDLAIFFYAPWCPYCKLVGPYWDMLGEWHLAQ--TTPSLLITRFDCEQDALAMDICMYMGVTQYPTIQYLGYGSYYQN---------LLSWLFRHPGSNVDRTVFFEGVPDPEILKDWTLMMKGISGWHRWREGWRKRTK 216          
The following BLAST results are available for this feature:
BLAST of NO10G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25280.12.300e-6760.94Thioredoxin domain protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00450NO10G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00450.1NO10G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00450.1.cds1NO10G00450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00450.1.cds2NO10G00450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00450.1 ID=NO10G00450.1|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp
ATGGAGCTAGCCTCCCCGTCAGCATCACCACTAACAACAGCGCGGAGGAG
AAGAAGGAGGAGAATAGGACGTCTTCTTGGCCCCTCTTCATCCTTTTCCG
CCTTCCGCCTTCCCCTCCTCCTCTGCCTCCTCTGCCTCCTCTGCTTCCTC
GCTGTTTCTAGCCACGGCGCAACCACTACCACAGCCGCCATCCCACAAAC
TAAAACAAAGAGGAGGCAAAAGCCCGTCGTTTCTCTTTCGTCGGAAGAGC
TGCTGGATCATTTGGAGGGATGGACAACGGACGTTGCCATCTTCTTTTAT
GCGCCCTGGTGCCCGTATTGCAAGCTCGTCGGCCCTTACTGGGACATGGT
GGGCGAATGGCATGCCGAGCAACAACCCCCCACCCCGTCACTCCTCGTCG
CTCGCTTCGACTGCGAGCAAGACGCCCTCGCCACGGATATCTGTGTGTAC
ATGGGTGTCACGCATTACCCCACCATTCAATATTTAGGCTATGGCCCTTA
CTACCAACAGAGTATCTGGTCGTTCTTGTCCAATTTATTAATTTATTTCC
GTCTGTCGGCCCCCAAGGTTAATGTGGAGAGGGCTGTATTCTTTGAGGGC
ATACCCGACCCGGAAGTGCTGAAAGATTGGACAAACATGATGCGAGGGAT
TAGCAGCTGGCATCGGTGGAGGAAGGGGGGGAGGAAGGGAGTGAAGGAGG
GAGCGGTGGCGTTGGAAGAACGGAAGGAGAGACGGAGGTTGGAAAGGGAG
GTGGAGGAGTTGAAGGATGAGAAGAGGTGGTTAGAGGCGGCCGCGAGGAA
AGGGGGGAAGGAAAGTGGAGTAGGCGGAGGGAGTGGGGGAGGGAAGAGTT
TGTATGAGGAGTGGTTTGGGCCGTCCGCTGCTGATGGTGTTAGTGCTGGT
GGTGCTCCCGCTGGGGGAGGAGGAGGGAAGAGAAAGGAGAAGTATGGCGG
TTCGCCTTCTCCCTATTCTTCTTCAAGAGGAAAAGACGAGGAAATGGATG
ATTCTCCCTGGGCAGCAGCAACAGCAGCAGCGAAAGAAGCAGCAGCCACA
GGAGAAGACGAGGCACTAGAGAAATACTACCAGGAGCTGATGCGGAGTTT
GGAGAGCGGGGGGGGGGGAGGGGGGAAAGGAGGGGGGGAGGCGAATACAC
CGGAGGAGGTGGAGGCTGCGTTGGAAAAAATGGCAGAGGAGATTTTGGGG
CCTGTGACGGGAGGGAGGGGGGGAGGAGACCCTTTCGAGGAGCTCGCCGA
AGGAGGACTGAGAGGAAATGAGACAGTGGTGGTGCTTGAATGTCTGGGGG
ACTTTCTCGGTGATTATTGCAGGGAGGTGGCGGAGCAGGGGGGAATCGAG
GGGGAAGGGGAGGAGCCATTTTGTAAGCTGTTGCCGGGGTGTGTGAAGGA
CGGATTTGGAAGGGTGGAGTGCAGGCCAGCGAGGTGTCCACTGAGGAAGG
AAGGGTGCGAAAGGATCAAGAATTGTTTGAGGGAGGGAGTGATGGGATTG
TACGCACAGATGATGCCGGGGGAGGGAGGGAGGGTGGGAGGTAGGGAGGC
AGGGGGAGGAGGCGAGAAGGCGGGATCATCGTGGTGGGGGATGGGAGGAG
GAGGAGGAGGGGAGAAAGATTTGTAA
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protein sequence of NO10G00450.1

>NO10G00450.1-protein ID=NO10G00450.1-protein|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MELASPSASPLTTARRRRRRRIGRLLGPSSSFSAFRLPLLLCLLCLLCFL
AVSSHGATTTTAAIPQTKTKRRQKPVVSLSSEELLDHLEGWTTDVAIFFY
APWCPYCKLVGPYWDMVGEWHAEQQPPTPSLLVARFDCEQDALATDICVY
MGVTHYPTIQYLGYGPYYQQSIWSFLSNLLIYFRLSAPKVNVERAVFFEG
IPDPEVLKDWTNMMRGISSWHRWRKGGRKGVKEGAVALEERKERRRLERE
VEELKDEKRWLEAAARKGGKESGVGGGSGGGKSLYEEWFGPSAADGVSAG
GAPAGGGGGKRKEKYGGSPSPYSSSRGKDEEMDDSPWAAATAAAKEAAAT
GEDEALEKYYQELMRSLESGGGGGGKGGGEANTPEEVEAALEKMAEEILG
PVTGGRGGGDPFEELAEGGLRGNETVVVLECLGDFLGDYCREVAEQGGIE
GEGEEPFCKLLPGCVKDGFGRVECRPARCPLRKEGCERIKNCLREGVMGL
YAQMMPGEGGRVGGREAGGGGEKAGSSWWGMGGGGGGEKDL*
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mRNA from alignment at chr10:150850..152615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00450.1 ID=NO10G00450.1|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1766bp|location=Sequence derived from alignment at chr10:150850..152615- (Nannochloropsis oceanica)
ATGGAGCTAGCCTCCCCGTCAGCATCACCACTAACAACAGCGCGGAGGAG AAGAAGGAGGAGAATAGGACGTCTTCTTGGCCCCTCTTCATCCTTTTCCG CCTTCCGCCTTCCCCTCCTCCTCTGCCTCCTCTGCCTCCTCTGCTTCCTC GCTGTTTCTAGCCACGGCGCAACCACTACCACAGCCGCCATCCCACAAAC TAAAACAAAGAGGAGGCAAAAGCCCGTCGTTTCTCTTTCGTCGGAAGAGC TGCTGGATCATTTGGAGGGATGGACAACGGACGTTGCCATCTTCTTTTAT GCGCCCTGGTGCCCGTATTGCAAGTGAGTGGGAAAAAGACGGAGGGCGGG AGGGAGGAAGAGAGGGAGAAAGAGATGATATAAGGGAGGGTTGAGTAGAC ATCACGGATCATCCACAAATTCTTACACGACCTCCCCTTCCCTCCCTACC TTCCTCCTCACAGGCTCGTCGGCCCTTACTGGGACATGGTGGGCGAATGG CATGCCGAGCAACAACCCCCCACCCCGTCACTCCTCGTCGCTCGCTTCGA CTGCGAGCAAGACGCCCTCGCCACGGATATCTGTGTGTACATGGGTGTCA CGCATTACCCCACCATTCAATATTTAGGCTATGGCCCTTACTACCAACAG AGTATCTGGTCGTTCTTGTCCAATTTATTAATTTATTTCCGTCTGTCGGC CCCCAAGGTTAATGTGGAGAGGGCTGTATTCTTTGAGGGCATACCCGACC CGGAAGTGCTGAAAGATTGGACAAACATGATGCGAGGGATTAGCAGCTGG CATCGGTGGAGGAAGGGGGGGAGGAAGGGAGTGAAGGAGGGAGCGGTGGC GTTGGAAGAACGGAAGGAGAGACGGAGGTTGGAAAGGGAGGTGGAGGAGT TGAAGGATGAGAAGAGGTGGTTAGAGGCGGCCGCGAGGAAAGGGGGGAAG GAAAGTGGAGTAGGCGGAGGGAGTGGGGGAGGGAAGAGTTTGTATGAGGA GTGGTTTGGGCCGTCCGCTGCTGATGGTGTTAGTGCTGGTGGTGCTCCCG CTGGGGGAGGAGGAGGGAAGAGAAAGGAGAAGTATGGCGGTTCGCCTTCT CCCTATTCTTCTTCAAGAGGAAAAGACGAGGAAATGGATGATTCTCCCTG GGCAGCAGCAACAGCAGCAGCGAAAGAAGCAGCAGCCACAGGAGAAGACG AGGCACTAGAGAAATACTACCAGGAGCTGATGCGGAGTTTGGAGAGCGGG GGGGGGGGAGGGGGGAAAGGAGGGGGGGAGGCGAATACACCGGAGGAGGT GGAGGCTGCGTTGGAAAAAATGGCAGAGGAGATTTTGGGGCCTGTGACGG GAGGGAGGGGGGGAGGAGACCCTTTCGAGGAGCTCGCCGAAGGAGGACTG AGAGGAAATGAGACAGTGGTGGTGCTTGAATGTCTGGGGGACTTTCTCGG TGATTATTGCAGGGAGGTGGCGGAGCAGGGGGGAATCGAGGGGGAAGGGG AGGAGCCATTTTGTAAGCTGTTGCCGGGGTGTGTGAAGGACGGATTTGGA AGGGTGGAGTGCAGGCCAGCGAGGTGTCCACTGAGGAAGGAAGGGTGCGA AAGGATCAAGAATTGTTTGAGGGAGGGAGTGATGGGATTGTACGCACAGA TGATGCCGGGGGAGGGAGGGAGGGTGGGAGGTAGGGAGGCAGGGGGAGGA GGCGAGAAGGCGGGATCATCGTGGTGGGGGATGGGAGGAGGAGGAGGAGG GGAGAAAGATTTGTAA
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Coding sequence (CDS) from alignment at chr10:150850..152615-

>NO10G00450.1 ID=NO10G00450.1|Name=NO10G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr10:150850..152615- (Nannochloropsis oceanica)
ATGGAGCTAGCCTCCCCGTCAGCATCACCACTAACAACAGCGCGGAGGAG
AAGAAGGAGGAGAATAGGACGTCTTCTTGGCCCCTCTTCATCCTTTTCCG
CCTTCCGCCTTCCCCTCCTCCTCTGCCTCCTCTGCCTCCTCTGCTTCCTC
GCTGTTTCTAGCCACGGCGCAACCACTACCACAGCCGCCATCCCACAAAC
TAAAACAAAGAGGAGGCAAAAGCCCGTCGTTTCTCTTTCGTCGGAAGAGC
TGCTGGATCATTTGGAGGGATGGACAACGGACGTTGCCATCTTCTTTTAT
GCGCCCTGGTGCCCGTATTGCAAGCTCGTCGGCCCTTACTGGGACATGGT
GGGCGAATGGCATGCCGAGCAACAACCCCCCACCCCGTCACTCCTCGTCG
CTCGCTTCGACTGCGAGCAAGACGCCCTCGCCACGGATATCTGTGTGTAC
ATGGGTGTCACGCATTACCCCACCATTCAATATTTAGGCTATGGCCCTTA
CTACCAACAGAGTATCTGGTCGTTCTTGTCCAATTTATTAATTTATTTCC
GTCTGTCGGCCCCCAAGGTTAATGTGGAGAGGGCTGTATTCTTTGAGGGC
ATACCCGACCCGGAAGTGCTGAAAGATTGGACAAACATGATGCGAGGGAT
TAGCAGCTGGCATCGGTGGAGGAAGGGGGGGAGGAAGGGAGTGAAGGAGG
GAGCGGTGGCGTTGGAAGAACGGAAGGAGAGACGGAGGTTGGAAAGGGAG
GTGGAGGAGTTGAAGGATGAGAAGAGGTGGTTAGAGGCGGCCGCGAGGAA
AGGGGGGAAGGAAAGTGGAGTAGGCGGAGGGAGTGGGGGAGGGAAGAGTT
TGTATGAGGAGTGGTTTGGGCCGTCCGCTGCTGATGGTGTTAGTGCTGGT
GGTGCTCCCGCTGGGGGAGGAGGAGGGAAGAGAAAGGAGAAGTATGGCGG
TTCGCCTTCTCCCTATTCTTCTTCAAGAGGAAAAGACGAGGAAATGGATG
ATTCTCCCTGGGCAGCAGCAACAGCAGCAGCGAAAGAAGCAGCAGCCACA
GGAGAAGACGAGGCACTAGAGAAATACTACCAGGAGCTGATGCGGAGTTT
GGAGAGCGGGGGGGGGGGAGGGGGGAAAGGAGGGGGGGAGGCGAATACAC
CGGAGGAGGTGGAGGCTGCGTTGGAAAAAATGGCAGAGGAGATTTTGGGG
CCTGTGACGGGAGGGAGGGGGGGAGGAGACCCTTTCGAGGAGCTCGCCGA
AGGAGGACTGAGAGGAAATGAGACAGTGGTGGTGCTTGAATGTCTGGGGG
ACTTTCTCGGTGATTATTGCAGGGAGGTGGCGGAGCAGGGGGGAATCGAG
GGGGAAGGGGAGGAGCCATTTTGTAAGCTGTTGCCGGGGTGTGTGAAGGA
CGGATTTGGAAGGGTGGAGTGCAGGCCAGCGAGGTGTCCACTGAGGAAGG
AAGGGTGCGAAAGGATCAAGAATTGTTTGAGGGAGGGAGTGATGGGATTG
TACGCACAGATGATGCCGGGGGAGGGAGGGAGGGTGGGAGGTAGGGAGGC
AGGGGGAGGAGGCGAGAAGGCGGGATCATCGTGGTGGGGGATGGGAGGAG
GAGGAGGAGGGGAGAAAGATTTGTAA
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Synonyms
Publications