NO10G00430, NO10G00430 (gene) Nannochloropsis oceanica

Overview
NameNO10G00430
Unique NameNO10G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2792
Alignment locationchr10:146396..149187 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:146396..149187 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029035DHS-like_NAD/FAD-binding_dom
Homology
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BLAST of NO10G00430 vs. NCBI_GenBank
Match: EWM25277.1 (hypothetical protein Naga_101577g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 197.6 bits (501), Expect = 1.000e-46
Identity = 92/116 (79.31%), Postives = 98/116 (84.48%), Query Frame = 0 
Query:   51 RTVLVVGLSPASFKDEVLKHLWPKKYHPKLRLVWLNRDDPPPSLPPPWTWHETHKASTEALL--DNKDKGGLENKNNGGWGDAIFVVMGAGCSVQDFAHLKVAWANAYPFDKELLQ 165
            RT+LVVGLSPASFKDEVLKHLWPKKY PKLRLVWLNRDDPPPSLPPPW WHETH+   E+LL  +N  + G E      WGD+IFVVMGAGCSVQDF HLKVAWANAYPFDKELLQ
Sbjct:   27 RTLLVVGLSPASFKDEVLKHLWPKKYQPKLRLVWLNRDDPPPSLPPPWGWHETHRKPVESLLAPENVSEAGREEDIAQAWGDSIFVVMGAGCSVQDFRHLKVAWANAYPFDKELLQ 142
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BLAST of NO10G00430 vs. NCBI_GenBank
Match: EWM19902.1 (hypothetical protein Naga_103277g1 [Nannochloropsis gaditana])

HSP 1 Score: 127.1 bits (318), Expect = 1.700e-25
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:  171 MLDKRGRPLHEPLCLHTLRFMAVLRKAYLERRLPPFHQWLQREQERIRGILTFNIDSLEFLALDEERRGRIMQLHG 247
            MLD++GR + EPLCL TLRFMAVLRKAYLE RL PFH WL+REQ R++GI+TFNIDSLEFLALDE+R GR+MQLHG
Sbjct:    1 MLDRQGRLVQEPLCLQTLRFMAVLRKAYLEGRLAPFHCWLRREQARVKGIITFNIDSLEFLALDEDRHGRVMQLHG 76
The following BLAST results are available for this feature:
BLAST of NO10G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25277.11.000e-4679.31hypothetical protein Naga_101577g1, partial [Nanno... [more]
EWM19902.11.700e-2577.63hypothetical protein Naga_103277g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00430.1NO10G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|426414gene_4177Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101577g1gene5231Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00430.1NO10G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00430 ID=NO10G00430|Name=NO10G00430|organism=Nannochloropsis oceanica|type=gene|length=2792bp
ATGGAGCCACCACGGCCGCCGTCAGCGGCACTACCCACGCCTCCACCGCC
ACTACCACTACCAGACACCACCGCACATCTCCTGCCTCCGCTTCCTCCTC
TTCCCCCCCACTGTGTCCAAGCGTCAAGCCCATCCCAATCCGGCTTCCTC
CGAACTGTCCTTGTTGTGGGCCTTTCCCCCGCTTCCTTCAAAGATGAGGT
TCTCAAGCACCTATGGCCAAAAAAGTACCATCCGAAGCTCCGACTCGTCT
GGTTGAACCGTGATGACCCCCCTCCCTCCCTCCCTCCCCCTTGGACCTGG
CACGAAACGCACAAAGCCTCCACTGAAGCGCTGCTCGACAATAAAGATAA
AGGCGGTCTTGAAAACAAGAATAACGGAGGGTGGGGCGATGCTATTTTTG
TAGTGATGGGCGCGGGGTGCTCGGTGCAGGACTTCGCGCATTTGAAAGTG
GCCTGGGCGAATGCCTACCCGTTTGATAAGGAATTATTGCAGgtaaggag
aagggaggggaggaggggaaagagggagaaaaggagggagggaggaaagg
gggggatgagttgttctgctcatcttgtccaacactcacccaaacacgaa
ttatccttccttccttccctccctccctccccccctccctcactccctcc
ctcactcccccctccctccctccccccctccctctctcgcagGCATCGGT
CGAGGTGGATATGCTGGACAAACGCGGCCGTCCCCTCCACGAGCCTCTCT
GCCTACATACCCTCCGCTTCATGGCCGTCCTGCGCAAGgtccgtctttca
cctcccctccctcccccccgccctcctcccgccctcccgtcctccttcct
tccctcctttcctctctccctgccttgccaattggaagtaaggggaaaac
ttttcacagaatcggaattcttcctagagctgctgagagcgacatggctc
actttgcgcgccctctttcctttcctctttccctccctccctccctccct
ccctccctcctgtcttagGCCTACCTGGAACGGCGCCTCCCTCCTTTCCA
CCAGTGGCTGCAGCGGGAGCAGGAGAGAATAAGAGGGATCCTTACCTTTA
ATATTGACTCCTTGGAGTTTCTGGCACTGGACGAGGAAAGACGGGGTAGG
ATCATGCAGCTCCACGgtgagaggacgagagggagggagggagggaggga
gggagggagggaggaaacgcgtgcattcgcatgcgcaaagcacccaaata
ccatccagactacgcgaaggcctcttttcagttcctccccttctctccct
ccttccgtctctccctctttgttcagGCAACATCCAGCAGCTAACGACGA
TGGATTCTCTTGCCACCTCCTACCCCACCAGAGAGGCTGCCCCTCCCTCC
CTTCATCCCTCCCTTTGGAACGACCCCGCGgtatgcagggaggaagggaa
cgagggacggagggacggagggtggttagggcacaggcaaagaatattca
gatttttatgtccatccttccctccttccttccctccctccctccctccg
tcccgttatgcatcagGCGCTCGGTCGCCTTGCCTCCTCCTCCTCCTCCA
CCACCACCACCCCCTCCCCCTCCCTCTCTTCCTCCCCCTCGACCAAGCAC
CGGAGCATTATCAACATAATCTTAGCAGAAGACTCTGGCATCTACATGGG
CCCTGCCTCTCTCCCTCCCGTCGAGAGCGACGACGGAGCAGGAGGGGAGG
GAGGGAGGGCGGGAGGGAGGGAGGGAGGGCCGATTCGGTCGAGGAGATAT
GTGCAACAGGGGCAGCAGGTGGAGGGATGGGTGGCGCAGATTAAAGAGGC
GGGAATACTGGAGCAGGAGCTAAGCCGCGGAGAGTTGGCAAAgtacaagg
gaaaggggggagggagggagggagggagggagggagggagggagggtggg
tgcctgtcgggccagggtattttaacgaaaaggagaggggggaagaaaga
gaggaaagaaggaaggagcaaaagaaggaaggagggtgcatggaaagaga
tgactacgtatcctgatcccccctcctcttccctccctccttcccccctc
ccccctccccaaagGCTCAACGCCTACATGCGGCAGCGGCTCCGAAATCT
CTTCATCGGGAATTGTGTTTTTACGGGGGAGGTGACCGATAGACGCGTGA
CGAAGACGATTCAGCAGTTTCTGCAGCGATTCGTTTGGGGGGGGAGGGAG
GGAGGGAGGGGAGGAGGGGAGGAGGACGAGTGGGCGAAATTGGAGAAGGA
Ggtgagaacgtgcaatgaaaagagggggggggggcgggagagaggagcag
gaggagcaagagacgaagagaagagtgggaagaaggagggggggaggagg
agagagaggaggggagggaggagaagaagaggaaagtcggggctgagaag
CCGCAGCAGCAGCCGCAGCAAGTGGAACATGAGGAATGTGAGCAGGAGCA
GGAGCAGGAGCAGGAGCAGGAGCAGGAGGAGGGGGAAGGAGAGAGGGAGG
GAGGGAGGGAGGGAGGGACGCCGGCAACAGCAATAGCGGACTTGGGGTGG
CTGAAAGGGAAGGGAGAGGGACGGGAGGAGGAATTGATGGTGGGCATGTC
CTTCGGGAAAGAGGACGGAGAGAAGGAGGAGAGAGGCGAGTCAGCTGCTG
TTGCTGCTGCTAATGCTGCTTATGCTGTTCGTCAGCCCCGGGGGGGGCTG
AGAAGACGGCTTTCTATGAGGGAAGTGAGGGCGGGGGAGTAG
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protein sequence of NO10G00430.1

>NO10G00430.1-protein ID=NO10G00430.1-protein|Name=NO10G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MEPPRPPSAALPTPPPPLPLPDTTAHLLPPLPPLPPHCVQASSPSQSGFL
RTVLVVGLSPASFKDEVLKHLWPKKYHPKLRLVWLNRDDPPPSLPPPWTW
HETHKASTEALLDNKDKGGLENKNNGGWGDAIFVVMGAGCSVQDFAHLKV
AWANAYPFDKELLQASVEVDMLDKRGRPLHEPLCLHTLRFMAVLRKAYLE
RRLPPFHQWLQREQERIRGILTFNIDSLEFLALDEERRGRIMQLHGNIQQ
LTTMDSLATSYPTREAAPPSLHPSLWNDPAALGRLASSSSSTTTTPSPSL
SSSPSTKHRSIINIILAEDSGIYMGPASLPPVESDDGAGGEGGRAGGREG
GPIRSRRYVQQGQQVEGWVAQIKEAGILEQELSRGELAKLNAYMRQRLRN
LFIGNCVFTGEVTDRRVTKTIQQFLQRFVWGGREGGRGGGEEDEWAKLEK
EPQQQPQQVEHEECEQEQEQEQEQEQEEGEGEREGGREGGTPATAIADLG
WLKGKGEGREEELMVGMSFGKEDGEKEERGESAAVAAANAAYAVRQPRGG
LRRRLSMREVRAGE*
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Synonyms
Publications