NO10G00430.1, NO10G00430.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00430.1
Unique Name	NO10G00430.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1695
Alignment location	chr10:146396..149187 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:146396..149187 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G00430.1 vs.
Match: EWM25277.1 (hypothetical protein Naga_101577g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 193.7 bits (491), Expect = 1.500e-45
Identity = 99/147 (67.35%), Postives = 109/147 (74.15%), Query Frame = 0

Query:   20 LPDTTAHLLPPLPPLPPHCVQASSPSQSGFLRTVLVVGLSPASFKDEVLKHLWPKKYHPKLRLVWLNRDDPPPSLPPPWTWHETHKASTEALL--DNKDKGGLENKNNGGWGDAIFVVMGAGCSVQDFAHLKVAWANAYPFDKELLQ 165
            LP    ++   +PP PP   +A         RT+LVVGLSPASFKDEVLKHLWPKKY PKLRLVWLNRDDPPPSLPPPW WHETH+   E+LL  +N  + G E      WGD+IFVVMGAGCSVQDF HLKVAWANAYPFDKELLQ
Sbjct:    3 LPARMKNISDFVPP-PPETQKAP------LTRTLLVVGLSPASFKDEVLKHLWPKKYQPKLRLVWLNRDDPPPSLPPPWGWHETHRKPVESLLAPENVSEAGREEDIAQAWGDSIFVVMGAGCSVQDFRHLKVAWANAYPFDKELLQ 142

The following BLAST results are available for this feature:

BLAST of NO10G00430.1 vs.

BLAST of NO10G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25277.1	1.500e-45	67.35	hypothetical protein Naga_101577g1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00430	NO10G00430	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00430.1	NO10G00430.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00430.1.cds1	NO10G00430.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00430.1.cds2	NO10G00430.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00430.1.cds3	NO10G00430.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00430.1.cds4	NO10G00430.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00430.1.cds5	NO10G00430.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00430.1.cds6	NO10G00430.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00430.1.cds7	NO10G00430.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:146396..149187-
coding sequence from alignment at chr10:146396..149187-

mRNA sequence

>NO10G00430.1 ID=NO10G00430.1|Name=NO10G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp
ATGGAGCCACCACGGCCGCCGTCAGCGGCACTACCCACGCCTCCACCGCC
ACTACCACTACCAGACACCACCGCACATCTCCTGCCTCCGCTTCCTCCTC
TTCCCCCCCACTGTGTCCAAGCGTCAAGCCCATCCCAATCCGGCTTCCTC
CGAACTGTCCTTGTTGTGGGCCTTTCCCCCGCTTCCTTCAAAGATGAGGT
TCTCAAGCACCTATGGCCAAAAAAGTACCATCCGAAGCTCCGACTCGTCT
GGTTGAACCGTGATGACCCCCCTCCCTCCCTCCCTCCCCCTTGGACCTGG
CACGAAACGCACAAAGCCTCCACTGAAGCGCTGCTCGACAATAAAGATAA
AGGCGGTCTTGAAAACAAGAATAACGGAGGGTGGGGCGATGCTATTTTTG
TAGTGATGGGCGCGGGGTGCTCGGTGCAGGACTTCGCGCATTTGAAAGTG
GCCTGGGCGAATGCCTACCCGTTTGATAAGGAATTATTGCAGGCATCGGT
CGAGGTGGATATGCTGGACAAACGCGGCCGTCCCCTCCACGAGCCTCTCT
GCCTACATACCCTCCGCTTCATGGCCGTCCTGCGCAAGGCCTACCTGGAA
CGGCGCCTCCCTCCTTTCCACCAGTGGCTGCAGCGGGAGCAGGAGAGAAT
AAGAGGGATCCTTACCTTTAATATTGACTCCTTGGAGTTTCTGGCACTGG
ACGAGGAAAGACGGGGTAGGATCATGCAGCTCCACGGCAACATCCAGCAG
CTAACGACGATGGATTCTCTTGCCACCTCCTACCCCACCAGAGAGGCTGC
CCCTCCCTCCCTTCATCCCTCCCTTTGGAACGACCCCGCGGCGCTCGGTC
GCCTTGCCTCCTCCTCCTCCTCCACCACCACCACCCCCTCCCCCTCCCTC
TCTTCCTCCCCCTCGACCAAGCACCGGAGCATTATCAACATAATCTTAGC
AGAAGACTCTGGCATCTACATGGGCCCTGCCTCTCTCCCTCCCGTCGAGA
GCGACGACGGAGCAGGAGGGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGA
GGGCCGATTCGGTCGAGGAGATATGTGCAACAGGGGCAGCAGGTGGAGGG
ATGGGTGGCGCAGATTAAAGAGGCGGGAATACTGGAGCAGGAGCTAAGCC
GCGGAGAGTTGGCAAAGCTCAACGCCTACATGCGGCAGCGGCTCCGAAAT
CTCTTCATCGGGAATTGTGTTTTTACGGGGGAGGTGACCGATAGACGCGT
GACGAAGACGATTCAGCAGTTTCTGCAGCGATTCGTTTGGGGGGGGAGGG
AGGGAGGGAGGGGAGGAGGGGAGGAGGACGAGTGGGCGAAATTGGAGAAG
GAGCCGCAGCAGCAGCCGCAGCAAGTGGAACATGAGGAATGTGAGCAGGA
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGGAGGGGGAAGGAGAGAGGG
AGGGAGGGAGGGAGGGAGGGACGCCGGCAACAGCAATAGCGGACTTGGGG
TGGCTGAAAGGGAAGGGAGAGGGACGGGAGGAGGAATTGATGGTGGGCAT
GTCCTTCGGGAAAGAGGACGGAGAGAAGGAGGAGAGAGGCGAGTCAGCTG
CTGTTGCTGCTGCTAATGCTGCTTATGCTGTTCGTCAGCCCCGGGGGGGG
CTGAGAAGACGGCTTTCTATGAGGGAAGTGAGGGCGGGGGAGTAG

protein sequence of NO10G00430.1

>NO10G00430.1-protein ID=NO10G00430.1-protein|Name=NO10G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MEPPRPPSAALPTPPPPLPLPDTTAHLLPPLPPLPPHCVQASSPSQSGFL
RTVLVVGLSPASFKDEVLKHLWPKKYHPKLRLVWLNRDDPPPSLPPPWTW
HETHKASTEALLDNKDKGGLENKNNGGWGDAIFVVMGAGCSVQDFAHLKV
AWANAYPFDKELLQASVEVDMLDKRGRPLHEPLCLHTLRFMAVLRKAYLE
RRLPPFHQWLQREQERIRGILTFNIDSLEFLALDEERRGRIMQLHGNIQQ
LTTMDSLATSYPTREAAPPSLHPSLWNDPAALGRLASSSSSTTTTPSPSL
SSSPSTKHRSIINIILAEDSGIYMGPASLPPVESDDGAGGEGGRAGGREG
GPIRSRRYVQQGQQVEGWVAQIKEAGILEQELSRGELAKLNAYMRQRLRN
LFIGNCVFTGEVTDRRVTKTIQQFLQRFVWGGREGGRGGGEEDEWAKLEK
EPQQQPQQVEHEECEQEQEQEQEQEQEEGEGEREGGREGGTPATAIADLG
WLKGKGEGREEELMVGMSFGKEDGEKEERGESAAVAAANAAYAVRQPRGG
LRRRLSMREVRAGE*

mRNA from alignment at chr10:146396..149187-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00430.1 ID=NO10G00430.1|Name=NO10G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2792bp|location=Sequence derived from alignment at chr10:146396..149187- (Nannochloropsis oceanica)
ATGGAGCCACCACGGCCGCCGTCAGCGGCACTACCCACGCCTCCACCGCC
ACTACCACTACCAGACACCACCGCACATCTCCTGCCTCCGCTTCCTCCTC
TTCCCCCCCACTGTGTCCAAGCGTCAAGCCCATCCCAATCCGGCTTCCTC
CGAACTGTCCTTGTTGTGGGCCTTTCCCCCGCTTCCTTCAAAGATGAGGT
TCTCAAGCACCTATGGCCAAAAAAGTACCATCCGAAGCTCCGACTCGTCT
GGTTGAACCGTGATGACCCCCCTCCCTCCCTCCCTCCCCCTTGGACCTGG
CACGAAACGCACAAAGCCTCCACTGAAGCGCTGCTCGACAATAAAGATAA
AGGCGGTCTTGAAAACAAGAATAACGGAGGGTGGGGCGATGCTATTTTTG
TAGTGATGGGCGCGGGGTGCTCGGTGCAGGACTTCGCGCATTTGAAAGTG
GCCTGGGCGAATGCCTACCCGTTTGATAAGGAATTATTGCAGGTAAGGAG
AAGGGAGGGGAGGAGGGGAAAGAGGGAGAAAAGGAGGGAGGGAGGAAAGG
GGGGGATGAGTTGTTCTGCTCATCTTGTCCAACACTCACCCAAACACGAA
TTATCCTTCCTTCCTTCCCTCCCTCCCTCCCCCCCTCCCTCACTCCCTCC
CTCACTCCCCCCTCCCTCCCTCCCCCCCTCCCTCTCTCGCAGGCATCGGT
CGAGGTGGATATGCTGGACAAACGCGGCCGTCCCCTCCACGAGCCTCTCT
GCCTACATACCCTCCGCTTCATGGCCGTCCTGCGCAAGGTCCGTCTTTCA
CCTCCCCTCCCTCCCCCCCGCCCTCCTCCCGCCCTCCCGTCCTCCTTCCT
TCCCTCCTTTCCTCTCTCCCTGCCTTGCCAATTGGAAGTAAGGGGAAAAC
TTTTCACAGAATCGGAATTCTTCCTAGAGCTGCTGAGAGCGACATGGCTC
ACTTTGCGCGCCCTCTTTCCTTTCCTCTTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTGTCTTAGGCCTACCTGGAACGGCGCCTCCCTCCTTTCCA
CCAGTGGCTGCAGCGGGAGCAGGAGAGAATAAGAGGGATCCTTACCTTTA
ATATTGACTCCTTGGAGTTTCTGGCACTGGACGAGGAAAGACGGGGTAGG
ATCATGCAGCTCCACGGTGAGAGGACGAGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGAAACGCGTGCATTCGCATGCGCAAAGCACCCAAATA
CCATCCAGACTACGCGAAGGCCTCTTTTCAGTTCCTCCCCTTCTCTCCCT
CCTTCCGTCTCTCCCTCTTTGTTCAGGCAACATCCAGCAGCTAACGACGA
TGGATTCTCTTGCCACCTCCTACCCCACCAGAGAGGCTGCCCCTCCCTCC
CTTCATCCCTCCCTTTGGAACGACCCCGCGGTATGCAGGGAGGAAGGGAA
CGAGGGACGGAGGGACGGAGGGTGGTTAGGGCACAGGCAAAGAATATTCA
GATTTTTATGTCCATCCTTCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCG
TCCCGTTATGCATCAGGCGCTCGGTCGCCTTGCCTCCTCCTCCTCCTCCA
CCACCACCACCCCCTCCCCCTCCCTCTCTTCCTCCCCCTCGACCAAGCAC
CGGAGCATTATCAACATAATCTTAGCAGAAGACTCTGGCATCTACATGGG
CCCTGCCTCTCTCCCTCCCGTCGAGAGCGACGACGGAGCAGGAGGGGAGG
GAGGGAGGGCGGGAGGGAGGGAGGGAGGGCCGATTCGGTCGAGGAGATAT
GTGCAACAGGGGCAGCAGGTGGAGGGATGGGTGGCGCAGATTAAAGAGGC
GGGAATACTGGAGCAGGAGCTAAGCCGCGGAGAGTTGGCAAAGTACAAGG
GAAAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGG
TGCCTGTCGGGCCAGGGTATTTTAACGAAAAGGAGAGGGGGGAAGAAAGA
GAGGAAAGAAGGAAGGAGCAAAAGAAGGAAGGAGGGTGCATGGAAAGAGA
TGACTACGTATCCTGATCCCCCCTCCTCTTCCCTCCCTCCTTCCCCCCTC
CCCCCTCCCCAAAGGCTCAACGCCTACATGCGGCAGCGGCTCCGAAATCT
CTTCATCGGGAATTGTGTTTTTACGGGGGAGGTGACCGATAGACGCGTGA
CGAAGACGATTCAGCAGTTTCTGCAGCGATTCGTTTGGGGGGGGAGGGAG
GGAGGGAGGGGAGGAGGGGAGGAGGACGAGTGGGCGAAATTGGAGAAGGA
GGTGAGAACGTGCAATGAAAAGAGGGGGGGGGGGCGGGAGAGAGGAGCAG
GAGGAGCAAGAGACGAAGAGAAGAGTGGGAAGAAGGAGGGGGGGAGGAGG
AGAGAGAGGAGGGGAGGGAGGAGAAGAAGAGGAAAGTCGGGGCTGAGAAG
CCGCAGCAGCAGCCGCAGCAAGTGGAACATGAGGAATGTGAGCAGGAGCA
GGAGCAGGAGCAGGAGCAGGAGCAGGAGGAGGGGGAAGGAGAGAGGGAGG
GAGGGAGGGAGGGAGGGACGCCGGCAACAGCAATAGCGGACTTGGGGTGG
CTGAAAGGGAAGGGAGAGGGACGGGAGGAGGAATTGATGGTGGGCATGTC
CTTCGGGAAAGAGGACGGAGAGAAGGAGGAGAGAGGCGAGTCAGCTGCTG
TTGCTGCTGCTAATGCTGCTTATGCTGTTCGTCAGCCCCGGGGGGGGCTG
AGAAGACGGCTTTCTATGAGGGAAGTGAGGGCGGGGGAGTAG

Coding sequence (CDS) from alignment at chr10:146396..149187-

>NO10G00430.1 ID=NO10G00430.1|Name=NO10G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr10:146396..149187- (Nannochloropsis oceanica)
ATGGAGCCACCACGGCCGCCGTCAGCGGCACTACCCACGCCTCCACCGCC
ACTACCACTACCAGACACCACCGCACATCTCCTGCCTCCGCTTCCTCCTC
TTCCCCCCCACTGTGTCCAAGCGTCAAGCCCATCCCAATCCGGCTTCCTC
CGAACTGTCCTTGTTGTGGGCCTTTCCCCCGCTTCCTTCAAAGATGAGGT
TCTCAAGCACCTATGGCCAAAAAAGTACCATCCGAAGCTCCGACTCGTCT
GGTTGAACCGTGATGACCCCCCTCCCTCCCTCCCTCCCCCTTGGACCTGG
CACGAAACGCACAAAGCCTCCACTGAAGCGCTGCTCGACAATAAAGATAA
AGGCGGTCTTGAAAACAAGAATAACGGAGGGTGGGGCGATGCTATTTTTG
TAGTGATGGGCGCGGGGTGCTCGGTGCAGGACTTCGCGCATTTGAAAGTG
GCCTGGGCGAATGCCTACCCGTTTGATAAGGAATTATTGCAGGCATCGGT
CGAGGTGGATATGCTGGACAAACGCGGCCGTCCCCTCCACGAGCCTCTCT
GCCTACATACCCTCCGCTTCATGGCCGTCCTGCGCAAGGCCTACCTGGAA
CGGCGCCTCCCTCCTTTCCACCAGTGGCTGCAGCGGGAGCAGGAGAGAAT
AAGAGGGATCCTTACCTTTAATATTGACTCCTTGGAGTTTCTGGCACTGG
ACGAGGAAAGACGGGGTAGGATCATGCAGCTCCACGGCAACATCCAGCAG
CTAACGACGATGGATTCTCTTGCCACCTCCTACCCCACCAGAGAGGCTGC
CCCTCCCTCCCTTCATCCCTCCCTTTGGAACGACCCCGCGGCGCTCGGTC
GCCTTGCCTCCTCCTCCTCCTCCACCACCACCACCCCCTCCCCCTCCCTC
TCTTCCTCCCCCTCGACCAAGCACCGGAGCATTATCAACATAATCTTAGC
AGAAGACTCTGGCATCTACATGGGCCCTGCCTCTCTCCCTCCCGTCGAGA
GCGACGACGGAGCAGGAGGGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGA
GGGCCGATTCGGTCGAGGAGATATGTGCAACAGGGGCAGCAGGTGGAGGG
ATGGGTGGCGCAGATTAAAGAGGCGGGAATACTGGAGCAGGAGCTAAGCC
GCGGAGAGTTGGCAAAGCTCAACGCCTACATGCGGCAGCGGCTCCGAAAT
CTCTTCATCGGGAATTGTGTTTTTACGGGGGAGGTGACCGATAGACGCGT
GACGAAGACGATTCAGCAGTTTCTGCAGCGATTCGTTTGGGGGGGGAGGG
AGGGAGGGAGGGGAGGAGGGGAGGAGGACGAGTGGGCGAAATTGGAGAAG
GAGCCGCAGCAGCAGCCGCAGCAAGTGGAACATGAGGAATGTGAGCAGGA
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGGAGGGGGAAGGAGAGAGGG
AGGGAGGGAGGGAGGGAGGGACGCCGGCAACAGCAATAGCGGACTTGGGG
TGGCTGAAAGGGAAGGGAGAGGGACGGGAGGAGGAATTGATGGTGGGCAT
GTCCTTCGGGAAAGAGGACGGAGAGAAGGAGGAGAGAGGCGAGTCAGCTG
CTGTTGCTGCTGCTAATGCTGCTTATGCTGTTCGTCAGCCCCGGGGGGGG
CTGAGAAGACGGCTTTCTATGAGGGAAGTGAGGGCGGGGGAGTAG

Synonyms

Publications