NO10G00240, NO10G00240 (gene) Nannochloropsis oceanica

Overview
NameNO10G00240
Unique NameNO10G00240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3962
Alignment locationchr10:82403..86364 +

Link to JBrowse

Properties
Property NameValue
DescriptionTubulin beta chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:82403..86364 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: INTERPRO
TermDefinition
IPR036525Tubulin/FtsZ_GTPase_sf
IPR008280Tub_FtsZ_C
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR002453Beta_tubulin
IPR000217Tubulin
Homology
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: XP_005852742.1 (tubulin beta [Nannochloropsis gaditana CCMP526] >EKU23091.1 tubulin beta [Nannochloropsis gaditana CCMP526] >EWM28533.1 beta-tubulin [Nannochloropsis gaditana])

HSP 1 Score: 826.6 bits (2134), Expect = 3.600e-236
Identity = 384/441 (87.07%), Postives = 421/441 (95.46%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            MREIVHVQAGQCGNQIGAKFWEVI+DEHG+D TG+YHGDSDLQLERI+VY+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQLTHS+GGGTG+G+GTLLISKIREEYPDR+M+TYSI+PSPKVSDTVVEPYNATLS+HQL+ENAD CF LDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSRGSQQYRA++  ELT Q F+AKNMMCAADPRHGRYLTCA MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TF+GN+TA+Q+VWKR+S+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EE
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVIADEHGVDPTGAYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSIIPSPKVSDTVVEPYNATLSVHQLVENADQCFVLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCACMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFIGNSTAVQEVWKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEE 441
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: CBJ26065.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 825.5 bits (2131), Expect = 8.000e-236
Identity = 385/441 (87.30%), Postives = 421/441 (95.46%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            MREIVHVQAGQCGNQIG+KFWEVISDEHGID TG+YHGDSDLQLERI+ Y+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CD LQGFQLTHS+GGGTG+G+GTLLISK+REEYPDRIM+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSRGSQQYRA++  ELT Q F++KNMMCAADPRHGRYLTCA+MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR++EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EE
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGAYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEE 441
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: P30156.1 (RecName: Full=Tubulin beta-5 chain; AltName: Full=Beta-5-tubulin >AAA33284.1 beta-tubulin [Ectocarpus variabilis] >CBJ30701.1 beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 825.1 bits (2130), Expect = 1.100e-235
Identity = 384/441 (87.07%), Postives = 421/441 (95.46%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            MREIVHVQAGQCGNQIG+KFWEVISDEHGID TGSYHGDSDLQLERI+ Y+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CD LQGFQLTHS+GGGTG+G+GTLLISK+REEYPDR+M+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSRGSQQYRA++  ELT Q F++KNMMCAADPRHGRYLTCA+MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR++EQFT+MFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EE
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEE 441
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: XP_009035452.1 (tubulin beta chain [Aureococcus anophagefferens] >XP_009036750.1 tubulin beta chain [Aureococcus anophagefferens] >XP_009039073.1 tubulin beta chain [Aureococcus anophagefferens] >EGB06117.1 tubulin beta chain [Aureococcus anophagefferens] >EGB08765.1 tubulin beta chain [Aureococcus anophagefferens] >EGB09376.1 tubulin beta chain [Aureococcus anophagefferens])

HSP 1 Score: 824.3 bits (2128), Expect = 1.800e-235
Identity = 379/442 (85.75%), Postives = 421/442 (95.25%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEEG 443
            MREIVH+Q GQCGNQIGAKFWEVISDEHG+D TG+YHGDSDLQLERI+VYYNEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQLTHS+GGGTG+G+GTLLISKIREEYPDR+M+TYS++PSPKVSDTVVEPYNATLS+HQL+EN+D CFTLDNEALYDICFRTLKLTTPTYGDLNHL++AA+CGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+M+GFAPLTSRGSQQYRA++  ELT Q F+AKNMMCAADPRHGRYLTC+ +FRGRMSTKEVDEQML+VINKNSSYFVEWIPNNV S+ICDIPP+GLKMS TF+GN+TAIQ+ WKR++EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EEG
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENSDQCFTLDNEALYDICFRTLKLTTPTYGDLNHLIAAALCGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCSCLFRGRMSTKEVDEQMLNVINKNSSYFVEWIPNNVKSAICDIPPKGLKMSTTFIGNSTAIQETWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEEG 442
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: CBN79446.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 823.9 bits (2127), Expect = 2.300e-235
Identity = 384/441 (87.07%), Postives = 420/441 (95.24%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            MREIVHVQAGQCGNQIG+KFWEVISDEHGID TG YHGDSDLQLERI+ Y+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CD LQGFQLTHS+GGGTG+G+GTLLISK+REEYPDRIM+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSRGSQQYRA++  ELT Q F++KNMMCAADPRHGRYLTCA+MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICD+PP+GLKMS TFVGNTTAIQ+VWKR++EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EE
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEE 441
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: CBN79445.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 822.4 bits (2123), Expect = 6.800e-235
Identity = 384/440 (87.27%), Postives = 419/440 (95.23%), Query Frame = 0 
Query:    2 REIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            REIVHVQAGQCGNQIG+KFWEVISDEHGID TG YHGDSDLQLERI+ Y+NEA GGRYVPR +L+DLEPGTMDSVRSGPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CD LQGFQLTHS+GGGTG+G+GTLLISK+REEYPDRIM+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSR SQQYRA+S  ELT Q F++KNMMCAADPRHGRYLTCA+MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICD+PP+GLKMS TFVGNTTAIQ+VWKR++EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT+++E  YDE+EE
Sbjct:    3 REIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRNSQQYRALSVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLAVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDEDEE 442
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: P30157.1 (RecName: Full=Tubulin beta-6 chain; AltName: Full=Beta-6-tubulin >AAA33285.1 beta-tubulin [Ectocarpus variabilis])

HSP 1 Score: 822.4 bits (2123), Expect = 6.800e-235
Identity = 384/441 (87.07%), Postives = 419/441 (95.01%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            MREIVHVQAGQCGNQIG+KFWEVISDEHGID TG YHGDSDLQLERI+ Y+NEA  GRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CD LQGFQLTHS+GGGTG+G+GTLLISK+REEYPDRIM+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSRGSQQYRA++  ELT Q F++KNMMCAADPRHGRYLTCA+MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR++EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EE
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGDSDLQLERINCYFNEATAGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEE 441
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: XP_002292479.1 (tubulin beta [Thalassiosira pseudonana CCMP1335] >EED90454.1 tubulin beta [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 818.9 bits (2114), Expect = 7.500e-234
Identity = 372/440 (84.55%), Postives = 419/440 (95.23%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEE 441
            MREIVH+Q GQCGNQIGAKFWEV+SDEHG+D TG+YHGDSDLQLERI+VY+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDC+QGFQLTHSLGGGTG+G+GTLLISKIREEYPDR+M+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CF LDNEALYDICFRTLKLTTPTYGDLNHL++AA+CGTT CLRFPGQLNCDLRKLAVNMVPFPRLHF+M+G+APLTSRGSQQYRA++  ELT Q F+AKNMMCAADPRHGRYLTCA++FRGRMS+KEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+G+KM+ TFVGNTTA+Q+ WKR++EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT DEE  +D+E+
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVMSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCMQGFQLTHSLGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLIAAAVCGTTCCLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVPELTQQCFDAKNMMCAADPRHGRYLTCAVLFRGRMSSKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGIKMATTFVGNTTAVQETWKRVAEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFDDED 440
[Close]
BLAST of NO10G00240 vs. NCBI_GenBank
Match: Q9LKI8.1 (RecName: Full=Tubulin beta chain; AltName: Full=Beta-tubulin [Conticribra weissflogii] >AAF81906.1 beta-tubulin [Conticribra weissflogii])

HSP 1 Score: 818.1 bits (2112), Expect = 1.300e-233
Identity = 372/440 (84.55%), Postives = 419/440 (95.23%), Query Frame = 0 
Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEE 441
            MREIVH+Q GQCGNQIGAKFWEV+SDEHG+D TG+YHGDSDLQLERI+VY+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDC+QGFQLTHS+GGGTG+G+GTLLISKIREEYPDR+M+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CF LDNEALYDICFRTLKLTTPTYGDLNHL++AA+CGTT CLRFPGQLNCDLRKLAVNMVPFPRLHF+M+G+APLTSRGSQQYRA++  ELT Q F+AKNMMCAADPRHGRYLTCA++FRGRMS+KEVDEQML+V+NK+SSYFVEWIPNNV +SICDIPP+GLKM+ TFVGNTTA+Q+ WKR++EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT DEE  +DE+E
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVMSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCMQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLIAAAVCGTTCCLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVPELTQQCFDAKNMMCAADPRHGRYLTCAVLFRGRMSSKEVDEQMLNVVNKSSSYFVEWIPNNVKASICDIPPKGLKMATTFVGNTTAVQETWKRVAEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFDEDE 440
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BLAST of NO10G00240 vs. NCBI_GenBank
Match: CBJ26064.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 815.1 bits (2104), Expect = 1.100e-232
Identity = 379/437 (86.73%), Postives = 416/437 (95.19%), Query Frame = 0 
Query:    5 VHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            VHVQAGQCGNQIG+KFWEVISDEHGID TG+YHGDSDLQLERI+ Y+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CD LQGFQ+THS+GGGTG+G+GTLLISKIREEYPDR+M+TYS++PSPKVSDTVVEPYNATLS+HQL+ENAD CF LDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSRGSQQYRA++  ELT Q F++KNMMCAADPRHGRYLTCA+MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR++EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EE
Sbjct:   32 VHVQAGQCGNQIGSKFWEVISDEHGIDPTGAYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQMTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFMLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEE 468
The following BLAST results are available for this feature:
BLAST of NO10G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852742.13.600e-23687.07tubulin beta [Nannochloropsis gaditana CCMP526] >E... [more]
CBJ26065.18.000e-23687.30beta tubulin [Ectocarpus siliculosus][more]
P30156.11.100e-23587.07RecName: Full=Tubulin beta-5 chain; AltName: Full=... [more]
XP_009035452.11.800e-23585.75tubulin beta chain [Aureococcus anophagefferens] >... [more]
CBN79446.12.300e-23587.07beta tubulin [Ectocarpus siliculosus][more]
CBN79445.16.800e-23587.27beta tubulin [Ectocarpus siliculosus][more]
P30157.16.800e-23587.07RecName: Full=Tubulin beta-6 chain; AltName: Full=... [more]
XP_002292479.17.500e-23484.55tubulin beta [Thalassiosira pseudonana CCMP1335] >... [more]
Q9LKI8.11.300e-23384.55RecName: Full=Tubulin beta chain; AltName: Full=Be... [more]
CBJ26064.11.100e-23286.73beta tubulin [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00240.1NO10G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586907gene_4197Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102953g1gene5252Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00240.1NO10G00240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00240 ID=NO10G00240|Name=NO10G00240|organism=Nannochloropsis oceanica|type=gene|length=3962bp
ATGCGTGAGATTGTTCACGTCCAGGCCGgtaagtgagagggagggagggg
aggcgaagacgaaaaccgagattccttaggaggcaacaagacgagacgga
agagggctgactgatcagcaacatccaccaccgcgggccacccatccatc
cccgggggtcaagttatagttaaaacttattgtacctgcgtgtgcagtga
gcgggaatggtgtcgtgggcctggttgctctccttcctcgcggagctgcg
tccctgtcttttctctgcgtgtctgtctgcttgacccttccgtgtcctgc
gtcacctgcaattcgaccaccaagcacaccaccactcgcatacaccacgc
ccctcacaccgccattcacagcctcacctctttactgcgcaatttgcaag
caaaagcttctcatgttcatttccctcctccccttgcaccgtcagctccg
gcatcatcgcacaaaccaacttacaagatccttgcaccctcatctccctc
cctccctccctccctccctccccctttacccaccagGACAATGCGGTAAC
CAGATCGGTGCCAAGTTTTGGGAGGTCATCTCCGACGAGCATGGCATTGA
CTCCACCGGgtgaggaaaggggaagggaagggagggcaaggagcgtacac
agcggatcaggaaaatgagtgagaaaagtatgtgaatgtatgagagattg
aggaagttttgcacgtgttggctgaaccaaataaggggagagaagacaaa
gtgaagacactgtcgcgcgaaggtactcactcacccctcctccccccttc
ccccgtgccagGTCTTACCACGGGGACTCCGACTTGCAGCTGGAGCGCAT
TGACGTGTACTACAACGAGGCCGTTGGCGgtacgtatgatcttccatacc
tggttctttggctgccgtttgatggagcctttgcgtcttgtaatgttaat
gttgtcaagtcgagagagacttatgtctgttgattatccccctggtagtc
tcgtccctttttaagaccctccctccctcccttcctcccccctccctcct
gcccccacagGCCGATACGTGCCCCGTTGCGTGCTGGTGGATTTGGAGCC
CGGGACCATGGACAGCGTCCGCTCTGGGCCTTTCGGAGGCCTCTTCCGCC
CTGgtagggagggagggagggagggagggagggagggtgggtgcacccac
cgcgcgacttgttgctcaccacacactacgattgtttcttttctgccgtc
cgtccctccctccctccctccctcagACAACTTCGTGTTCGGACAGTCGG
GCGCGGGCAACAATTGGGCCAAGGGCCACTACACCGAGGGCGCCGAGCTC
GTCGACCAGgtgcgtccttcctccctccctccctccctccctccctccct
ccttccttccttccttcgctggctttttccttgtccacgcgtttctcact
ttcccgccctccttcccctctttccctcgggcagGTCCTGGACGTTGTTC
GTCGCGAGGCCGAGGGCTGCGACTGCCTGCAAGgtatgtttgaaggccga
ggaggaggaggaggaggaggaggaggaggaggagggcttggtcaatgcat
cgaatatcggatgccctccttccctacgtccctctgtccttcaagacggc
tgcttgtttcttctcttctccaggctggcctctcggggctctggagacaa
gcagctgctcaccccccttccctccctccctccctccctccctccctccc
tcagGCTTCCAGCTGACCCACTCCCTGGGCGGCGGGACTGGCTCCGGGCT
GGGCACTCTCTTGATCAGCAAAATCCGCGAAGAGTACCCGGATCGTATCA
TGGCCACCTACTCCATCCTCCCCTCCCCAAAGgtacgtacgtggatgggt
ggatgggtttatgggagcctcgccttccctccccccctccctgcctttct
ttccttcctacccttgctttctttcttccttttgccgtgctcttgttttg
gtccgggtatgattggatttgaatgtcgtggcgacccactcattcacgcc
ctccctcccttcctcccagGTGTCGGACACGGTCGTCGAGCCCTACAACG
CCACCCTCTCCATTCACCAGCTCATCGAAAACGCCGACCACTGCTTCACC
CTCGACAACGAGgtccgtcccctccctccctctctccctccctcgctttg
tgcgaaaacacttccacgtcctcgtaaagccaccaccccctctcacctcc
ctccctccctccctttcttcccctccccactccctccctccctgcagGCT
CTGTATGACATCTGCTTCCGCACCCTCAAGCTGACCACACCCACCTACGG
TGACCTCAATCACCTCGTCTCCGCCGCCATCTGTGGCACCACCTCCTGCC
TCCGTTTCCCCGGGCAGCTCAACTGCGACCTCCGCAAGgtacgtcctcct
tccctccctctctccctcatgggcgccggtattcatctcttcctccccct
ccttctcctcctccctcccccaccttccctcgcacagCTCGCGGTGAACA
TGGTGCCTTTTCCCCGTCTCCATTTCTACATGATCGGTTTCGCCCCCTTG
gtacgttccctccctccctccctcctccctccctccctccctccctccct
ccctcacccaagtgcccttcatcgtcatctcactcccttccctccctccc
ctccctccctcccttccctccctgcagACCTCCCGCGGATCCCAGCAATA
CCGAGCCATGTCGTGCGCGGAGCTGACCCATCAGGCCTTCGAAGCGAAGA
ACATGATGTGCGCCGCTGACCCCCGCCACGGCCGGTACCTCACTTGTGCC
ATGATGTTCCGAGgtacgtgtggtcgtcccctcccaacgttcggtctacc
gttacccacaatgcctcgactgatatttgaatgtttaaaatacggctcgt
ttccggtgagcggcatcgattatcgtccctcccctatccacctcttaccc
caccccctccctccttccctccctccctccctccctccctccctccctcc
cccagGCCGCATGTCCACCAAGGAGGTGGATGAGCAGATGCTCTCCGTCA
TCAACAAGAATTCCTCCTACTTCGTGGAGTGGATCCCCAACAACGTCCTC
TCCTCCATCTGTGACATCCCACCCCGTGGCCTCAAGgtacgtgtctgcct
cgccctcccacccttcccccctccctccctccctctcttcttttctcttc
ccctcctcaaccacaaccacactccccctccctccccccccccccccttt
agATGTCGGCGACCTTCGTGGGAAATACCACCGCCATCCAAGACGTATGG
AAGCGAATCTCGGAGCAGTTCACGGCCATGTTCCGTCGAAAGGCTTTCTT
GCACTGgtgcgtgatgggggggagggagggagggagggaaggagggaggg
atggagggaggaaaggagagagaggtcttgatgagggtatcgtgtaacgc
ctgtctaatggcatcccagcggtaattcctcccgcctgtatgacgccgac
gaatgaagaagggcacgtgtaaaagctctttcgcgagcccacctacatac
ttccgcgtgtgcgtgtgatgggggcattagactacggctgataggaggcc
aatggcgatgatctccaggtcgcgccgcgaagccgcttaagcctccatac
tcacctccctccctccctctctcagGTACACGGGCGAGGGCATGGACGAG
ATGGAGTTCACGGAGGCCGAGAGCAACATGAACGACCTCATCTCCGAGTA
CCAGCAATACCAGgtgcgcccctccctccctccctctctccctcttttcc
ttcaattcgctcactcttccctccctcctttcctacccccctccctccac
agGACGCGACTGTAGACGAGGAGGAAGTGTACGACGAGGAGGAAGAGGGC
ATGCTCGCCTAA
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protein sequence of NO10G00240.1

>NO10G00240.1-protein ID=NO10G00240.1-protein|Name=NO10G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVY
YNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTL
LISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCF
TLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDL
RKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMM
CAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVL
SSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEEGMLA*
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Synonyms
Publications