NO10G00240.1, NO10G00240.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00240.1
Unique Name	NO10G00240.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1338
Alignment location	chr10:82403..86364 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:82403..86364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G00240.1 vs.
Match: XP_005852742.1 (tubulin beta [Nannochloropsis gaditana CCMP526]; EKU23091.1 tubulin beta [Nannochloropsis gaditana CCMP526]; EWM28533.1 beta-tubulin [Nannochloropsis gaditana])

HSP 1 Score: 826.6 bits (2134), Expect = 3.600e-236
Identity = 384/441 (87.07%), Postives = 421/441 (95.46%), Query Frame = 0

Query:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVYYNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTLLISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDLRKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMMCAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEE 442
            MREIVHVQAGQCGNQIGAKFWEVI+DEHG+D TG+YHGDSDLQLERI+VY+NEA GGRYVPR +L+DLEPGTMDSVR+GPFG LFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQLTHS+GGGTG+G+GTLLISKIREEYPDR+M+TYSI+PSPKVSDTVVEPYNATLS+HQL+ENAD CF LDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTT  LRFPGQLNCDLRKLAVNMVPFPRLHF+MIGFAPLTSRGSQQYRA++  ELT Q F+AKNMMCAADPRHGRYLTCA MFRGRMSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TF+GN+TA+Q+VWKR+S+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQDAT +EE  +DE+EE
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVIADEHGVDPTGAYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSIIPSPKVSDTVVEPYNATLSVHQLVENADQCFVLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCACMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFIGNSTAVQEVWKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEE 441

The following BLAST results are available for this feature:

BLAST of NO10G00240.1 vs.

BLAST of NO10G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005852742.1	3.600e-236	87.07	tubulin beta [Nannochloropsis gaditana CCMP526]; E...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00240	NO10G00240	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00240.1	NO10G00240.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00240.1.cds1	NO10G00240.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds2	NO10G00240.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds3	NO10G00240.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds4	NO10G00240.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds5	NO10G00240.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds6	NO10G00240.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds7	NO10G00240.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds8	NO10G00240.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds9	NO10G00240.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds10	NO10G00240.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds11	NO10G00240.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds12	NO10G00240.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds13	NO10G00240.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds14	NO10G00240.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00240.1.cds15	NO10G00240.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:82403..86364+
coding sequence from alignment at chr10:82403..86364+

mRNA sequence

>NO10G00240.1 ID=NO10G00240.1|Name=NO10G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
ATGCGTGAGATTGTTCACGTCCAGGCCGGACAATGCGGTAACCAGATCGG
TGCCAAGTTTTGGGAGGTCATCTCCGACGAGCATGGCATTGACTCCACCG
GGTCTTACCACGGGGACTCCGACTTGCAGCTGGAGCGCATTGACGTGTAC
TACAACGAGGCCGTTGGCGGCCGATACGTGCCCCGTTGCGTGCTGGTGGA
TTTGGAGCCCGGGACCATGGACAGCGTCCGCTCTGGGCCTTTCGGAGGCC
TCTTCCGCCCTGACAACTTCGTGTTCGGACAGTCGGGCGCGGGCAACAAT
TGGGCCAAGGGCCACTACACCGAGGGCGCCGAGCTCGTCGACCAGGTCCT
GGACGTTGTTCGTCGCGAGGCCGAGGGCTGCGACTGCCTGCAAGGCTTCC
AGCTGACCCACTCCCTGGGCGGCGGGACTGGCTCCGGGCTGGGCACTCTC
TTGATCAGCAAAATCCGCGAAGAGTACCCGGATCGTATCATGGCCACCTA
CTCCATCCTCCCCTCCCCAAAGGTGTCGGACACGGTCGTCGAGCCCTACA
ACGCCACCCTCTCCATTCACCAGCTCATCGAAAACGCCGACCACTGCTTC
ACCCTCGACAACGAGGCTCTGTATGACATCTGCTTCCGCACCCTCAAGCT
GACCACACCCACCTACGGTGACCTCAATCACCTCGTCTCCGCCGCCATCT
GTGGCACCACCTCCTGCCTCCGTTTCCCCGGGCAGCTCAACTGCGACCTC
CGCAAGCTCGCGGTGAACATGGTGCCTTTTCCCCGTCTCCATTTCTACAT
GATCGGTTTCGCCCCCTTGACCTCCCGCGGATCCCAGCAATACCGAGCCA
TGTCGTGCGCGGAGCTGACCCATCAGGCCTTCGAAGCGAAGAACATGATG
TGCGCCGCTGACCCCCGCCACGGCCGGTACCTCACTTGTGCCATGATGTT
CCGAGGCCGCATGTCCACCAAGGAGGTGGATGAGCAGATGCTCTCCGTCA
TCAACAAGAATTCCTCCTACTTCGTGGAGTGGATCCCCAACAACGTCCTC
TCCTCCATCTGTGACATCCCACCCCGTGGCCTCAAGATGTCGGCGACCTT
CGTGGGAAATACCACCGCCATCCAAGACGTATGGAAGCGAATCTCGGAGC
AGTTCACGGCCATGTTCCGTCGAAAGGCTTTCTTGCACTGGTACACGGGC
GAGGGCATGGACGAGATGGAGTTCACGGAGGCCGAGAGCAACATGAACGA
CCTCATCTCCGAGTACCAGCAATACCAGGACGCGACTGTAGACGAGGAGG
AAGTGTACGACGAGGAGGAAGAGGGCATGCTCGCCTAA

protein sequence of NO10G00240.1

>NO10G00240.1-protein ID=NO10G00240.1-protein|Name=NO10G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MREIVHVQAGQCGNQIGAKFWEVISDEHGIDSTGSYHGDSDLQLERIDVY
YNEAVGGRYVPRCVLVDLEPGTMDSVRSGPFGGLFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQLTHSLGGGTGSGLGTL
LISKIREEYPDRIMATYSILPSPKVSDTVVEPYNATLSIHQLIENADHCF
TLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTSCLRFPGQLNCDL
RKLAVNMVPFPRLHFYMIGFAPLTSRGSQQYRAMSCAELTHQAFEAKNMM
CAADPRHGRYLTCAMMFRGRMSTKEVDEQMLSVINKNSSYFVEWIPNNVL
SSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLISEYQQYQDATVDEEEVYDEEEEGMLA*

mRNA from alignment at chr10:82403..86364+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00240.1 ID=NO10G00240.1|Name=NO10G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3962bp|location=Sequence derived from alignment at chr10:82403..86364+ (Nannochloropsis oceanica)
ATGCGTGAGATTGTTCACGTCCAGGCCGGTAAGTGAGAGGGAGGGAGGGG
AGGCGAAGACGAAAACCGAGATTCCTTAGGAGGCAACAAGACGAGACGGA
AGAGGGCTGACTGATCAGCAACATCCACCACCGCGGGCCACCCATCCATC
CCCGGGGGTCAAGTTATAGTTAAAACTTATTGTACCTGCGTGTGCAGTGA
GCGGGAATGGTGTCGTGGGCCTGGTTGCTCTCCTTCCTCGCGGAGCTGCG
TCCCTGTCTTTTCTCTGCGTGTCTGTCTGCTTGACCCTTCCGTGTCCTGC
GTCACCTGCAATTCGACCACCAAGCACACCACCACTCGCATACACCACGC
CCCTCACACCGCCATTCACAGCCTCACCTCTTTACTGCGCAATTTGCAAG
CAAAAGCTTCTCATGTTCATTTCCCTCCTCCCCTTGCACCGTCAGCTCCG
GCATCATCGCACAAACCAACTTACAAGATCCTTGCACCCTCATCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCCTTTACCCACCAGGACAATGCGGTAAC
CAGATCGGTGCCAAGTTTTGGGAGGTCATCTCCGACGAGCATGGCATTGA
CTCCACCGGGTGAGGAAAGGGGAAGGGAAGGGAGGGCAAGGAGCGTACAC
AGCGGATCAGGAAAATGAGTGAGAAAAGTATGTGAATGTATGAGAGATTG
AGGAAGTTTTGCACGTGTTGGCTGAACCAAATAAGGGGAGAGAAGACAAA
GTGAAGACACTGTCGCGCGAAGGTACTCACTCACCCCTCCTCCCCCCTTC
CCCCGTGCCAGGTCTTACCACGGGGACTCCGACTTGCAGCTGGAGCGCAT
TGACGTGTACTACAACGAGGCCGTTGGCGGTACGTATGATCTTCCATACC
TGGTTCTTTGGCTGCCGTTTGATGGAGCCTTTGCGTCTTGTAATGTTAAT
GTTGTCAAGTCGAGAGAGACTTATGTCTGTTGATTATCCCCCTGGTAGTC
TCGTCCCTTTTTAAGACCCTCCCTCCCTCCCTTCCTCCCCCCTCCCTCCT
GCCCCCACAGGCCGATACGTGCCCCGTTGCGTGCTGGTGGATTTGGAGCC
CGGGACCATGGACAGCGTCCGCTCTGGGCCTTTCGGAGGCCTCTTCCGCC
CTGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGTGCACCCAC
CGCGCGACTTGTTGCTCACCACACACTACGATTGTTTCTTTTCTGCCGTC
CGTCCCTCCCTCCCTCCCTCCCTCAGACAACTTCGTGTTCGGACAGTCGG
GCGCGGGCAACAATTGGGCCAAGGGCCACTACACCGAGGGCGCCGAGCTC
GTCGACCAGGTGCGTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCCTTCCTTCCTTCGCTGGCTTTTTCCTTGTCCACGCGTTTCTCACT
TTCCCGCCCTCCTTCCCCTCTTTCCCTCGGGCAGGTCCTGGACGTTGTTC
GTCGCGAGGCCGAGGGCTGCGACTGCCTGCAAGGTATGTTTGAAGGCCGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCTTGGTCAATGCAT
CGAATATCGGATGCCCTCCTTCCCTACGTCCCTCTGTCCTTCAAGACGGC
TGCTTGTTTCTTCTCTTCTCCAGGCTGGCCTCTCGGGGCTCTGGAGACAA
GCAGCTGCTCACCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCAGGCTTCCAGCTGACCCACTCCCTGGGCGGCGGGACTGGCTCCGGGCT
GGGCACTCTCTTGATCAGCAAAATCCGCGAAGAGTACCCGGATCGTATCA
TGGCCACCTACTCCATCCTCCCCTCCCCAAAGGTACGTACGTGGATGGGT
GGATGGGTTTATGGGAGCCTCGCCTTCCCTCCCCCCCTCCCTGCCTTTCT
TTCCTTCCTACCCTTGCTTTCTTTCTTCCTTTTGCCGTGCTCTTGTTTTG
GTCCGGGTATGATTGGATTTGAATGTCGTGGCGACCCACTCATTCACGCC
CTCCCTCCCTTCCTCCCAGGTGTCGGACACGGTCGTCGAGCCCTACAACG
CCACCCTCTCCATTCACCAGCTCATCGAAAACGCCGACCACTGCTTCACC
CTCGACAACGAGGTCCGTCCCCTCCCTCCCTCTCTCCCTCCCTCGCTTTG
TGCGAAAACACTTCCACGTCCTCGTAAAGCCACCACCCCCTCTCACCTCC
CTCCCTCCCTCCCTTTCTTCCCCTCCCCACTCCCTCCCTCCCTGCAGGCT
CTGTATGACATCTGCTTCCGCACCCTCAAGCTGACCACACCCACCTACGG
TGACCTCAATCACCTCGTCTCCGCCGCCATCTGTGGCACCACCTCCTGCC
TCCGTTTCCCCGGGCAGCTCAACTGCGACCTCCGCAAGGTACGTCCTCCT
TCCCTCCCTCTCTCCCTCATGGGCGCCGGTATTCATCTCTTCCTCCCCCT
CCTTCTCCTCCTCCCTCCCCCACCTTCCCTCGCACAGCTCGCGGTGAACA
TGGTGCCTTTTCCCCGTCTCCATTTCTACATGATCGGTTTCGCCCCCTTG
GTACGTTCCCTCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCACCCAAGTGCCCTTCATCGTCATCTCACTCCCTTCCCTCCCTCCC
CTCCCTCCCTCCCTTCCCTCCCTGCAGACCTCCCGCGGATCCCAGCAATA
CCGAGCCATGTCGTGCGCGGAGCTGACCCATCAGGCCTTCGAAGCGAAGA
ACATGATGTGCGCCGCTGACCCCCGCCACGGCCGGTACCTCACTTGTGCC
ATGATGTTCCGAGGTACGTGTGGTCGTCCCCTCCCAACGTTCGGTCTACC
GTTACCCACAATGCCTCGACTGATATTTGAATGTTTAAAATACGGCTCGT
TTCCGGTGAGCGGCATCGATTATCGTCCCTCCCCTATCCACCTCTTACCC
CACCCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CCCAGGCCGCATGTCCACCAAGGAGGTGGATGAGCAGATGCTCTCCGTCA
TCAACAAGAATTCCTCCTACTTCGTGGAGTGGATCCCCAACAACGTCCTC
TCCTCCATCTGTGACATCCCACCCCGTGGCCTCAAGGTACGTGTCTGCCT
CGCCCTCCCACCCTTCCCCCCTCCCTCCCTCCCTCTCTTCTTTTCTCTTC
CCCTCCTCAACCACAACCACACTCCCCCTCCCTCCCCCCCCCCCCCCTTT
AGATGTCGGCGACCTTCGTGGGAAATACCACCGCCATCCAAGACGTATGG
AAGCGAATCTCGGAGCAGTTCACGGCCATGTTCCGTCGAAAGGCTTTCTT
GCACTGGTGCGTGATGGGGGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGG
ATGGAGGGAGGAAAGGAGAGAGAGGTCTTGATGAGGGTATCGTGTAACGC
CTGTCTAATGGCATCCCAGCGGTAATTCCTCCCGCCTGTATGACGCCGAC
GAATGAAGAAGGGCACGTGTAAAAGCTCTTTCGCGAGCCCACCTACATAC
TTCCGCGTGTGCGTGTGATGGGGGCATTAGACTACGGCTGATAGGAGGCC
AATGGCGATGATCTCCAGGTCGCGCCGCGAAGCCGCTTAAGCCTCCATAC
TCACCTCCCTCCCTCCCTCTCTCAGGTACACGGGCGAGGGCATGGACGAG
ATGGAGTTCACGGAGGCCGAGAGCAACATGAACGACCTCATCTCCGAGTA
CCAGCAATACCAGGTGCGCCCCTCCCTCCCTCCCTCTCTCCCTCTTTTCC
TTCAATTCGCTCACTCTTCCCTCCCTCCTTTCCTACCCCCCTCCCTCCAC
AGGACGCGACTGTAGACGAGGAGGAAGTGTACGACGAGGAGGAAGAGGGC
ATGCTCGCCTAA

Coding sequence (CDS) from alignment at chr10:82403..86364+

>NO10G00240.1 ID=NO10G00240.1|Name=NO10G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr10:82403..86364+ (Nannochloropsis oceanica)
ATGCGTGAGATTGTTCACGTCCAGGCCGGACAATGCGGTAACCAGATCGG
TGCCAAGTTTTGGGAGGTCATCTCCGACGAGCATGGCATTGACTCCACCG
GGTCTTACCACGGGGACTCCGACTTGCAGCTGGAGCGCATTGACGTGTAC
TACAACGAGGCCGTTGGCGGCCGATACGTGCCCCGTTGCGTGCTGGTGGA
TTTGGAGCCCGGGACCATGGACAGCGTCCGCTCTGGGCCTTTCGGAGGCC
TCTTCCGCCCTGACAACTTCGTGTTCGGACAGTCGGGCGCGGGCAACAAT
TGGGCCAAGGGCCACTACACCGAGGGCGCCGAGCTCGTCGACCAGGTCCT
GGACGTTGTTCGTCGCGAGGCCGAGGGCTGCGACTGCCTGCAAGGCTTCC
AGCTGACCCACTCCCTGGGCGGCGGGACTGGCTCCGGGCTGGGCACTCTC
TTGATCAGCAAAATCCGCGAAGAGTACCCGGATCGTATCATGGCCACCTA
CTCCATCCTCCCCTCCCCAAAGGTGTCGGACACGGTCGTCGAGCCCTACA
ACGCCACCCTCTCCATTCACCAGCTCATCGAAAACGCCGACCACTGCTTC
ACCCTCGACAACGAGGCTCTGTATGACATCTGCTTCCGCACCCTCAAGCT
GACCACACCCACCTACGGTGACCTCAATCACCTCGTCTCCGCCGCCATCT
GTGGCACCACCTCCTGCCTCCGTTTCCCCGGGCAGCTCAACTGCGACCTC
CGCAAGCTCGCGGTGAACATGGTGCCTTTTCCCCGTCTCCATTTCTACAT
GATCGGTTTCGCCCCCTTGACCTCCCGCGGATCCCAGCAATACCGAGCCA
TGTCGTGCGCGGAGCTGACCCATCAGGCCTTCGAAGCGAAGAACATGATG
TGCGCCGCTGACCCCCGCCACGGCCGGTACCTCACTTGTGCCATGATGTT
CCGAGGCCGCATGTCCACCAAGGAGGTGGATGAGCAGATGCTCTCCGTCA
TCAACAAGAATTCCTCCTACTTCGTGGAGTGGATCCCCAACAACGTCCTC
TCCTCCATCTGTGACATCCCACCCCGTGGCCTCAAGATGTCGGCGACCTT
CGTGGGAAATACCACCGCCATCCAAGACGTATGGAAGCGAATCTCGGAGC
AGTTCACGGCCATGTTCCGTCGAAAGGCTTTCTTGCACTGGTACACGGGC
GAGGGCATGGACGAGATGGAGTTCACGGAGGCCGAGAGCAACATGAACGA
CCTCATCTCCGAGTACCAGCAATACCAGGACGCGACTGTAGACGAGGAGG
AAGTGTACGACGAGGAGGAAGAGGGCATGCTCGCCTAA

Synonyms

Publications