NO10G00070, NO10G00070 (gene) Nannochloropsis oceanica

Overview
NameNO10G00070
Unique NameNO10G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3790
Alignment locationchr10:20538..24327 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphatidylinositol-4-phosphate 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:20538..24327 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003409MORN
Homology
BLAST of NO10G00070 vs. NCBI_GenBank
Match: EWM25240.1 (phosphatidylinositol-4-phosphate 5 [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 5.100e-10
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0
Query:  336 EEGGDVLKGQWEQGTLVNISQFCFAKDSPWNDPKY 371
            EEGGDVL+GQWE G LVN+ QFCFA+DSPWNDPKY
Sbjct:  424 EEGGDVLRGQWEHGVLVNVVQFCFARDSPWNDPKY 458          
The following BLAST results are available for this feature:
BLAST of NO10G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25240.15.100e-1082.86phosphatidylinositol-4-phosphate 5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007659NSK007659Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00070.1NO10G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|561136gene_10817Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100089g13gene5274Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00070.1NO10G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00070 ID=NO10G00070|Name=NO10G00070|organism=Nannochloropsis oceanica|type=gene|length=3790bp
CGTGGTTGCTTTTAGGGTTGCCCTGTGCGTTTTTAGACCTTACAGTCAAA
CCGTCATACACCCACGCACCTACAGATACACGGAGGTCCAGAACATGCCC
CCTTGCCTGGCTCTGCCGGTAGTCACAGAGCTCGCCGCAATGCGCTTGAA
GGTTCCTCGGCGACTGGCGAGCTCGACACATCATCGCAAGCGGCCGGCCA
TCCTAACCCGACTCAAGCTCTCCTTGACGTCCACAACTTACGCACGCAAG
TACTTTTGCACACAAGCACAGGAACCAGCCAAGGTAGGGCGAGACGCAGC
CTTTCCTGCCTTTTCTACTCCAATTCCAAAGAGAGCGAGAGCGGCAGTAG
CAGCAGCGCGGGCGACCGGGCAACGCCGCGAGCAAGGAGTGATCAGCCAT
GATGATCACCAGCTACCGgtaggacggagagggaagagaacccgaggagg
gggagagagataaaggaaaaaaggaggacatgccgtcgtcttggtggaaa
ggggtggtgggagaaggggctctcgtaggaagggcagtcatcagcagggc
ttggtcgtccttgtgttgctccctcgtcttgtcattctattctcctactc
actccgctttccttctaaatgtgtatgcacaatatctttgaatcatttcc
cagAGGTAACATTTTGGATGGGACTCTGCATGGACGAGGCGAGGCGGAGT
ACGCCAACGGGGAGCGCTTCGAAGGGgtgagtcaaatagcaagcggcagg
ccgtgtgggggggagggaaggcgcctctttaccctccgggaaaacgggga
gctaaatataatactgcaatcaatagagtgatgcatgcagtctggccagc
tttgtgcatgttgtggcctgcctttcccttcttctctcactttctcctat
tcctccttgtgcagGACTGGGTGCATGGCAAGCGGCAAGGCCAGGGCACC
TACACCTATGCCGACGGGAGTGTCTACACAGgtgtgtgcaacatcacata
ctcctcgttttcactttttgtatcctctcactactccgctctgtctcctc
cttgcagGGCAATGGGACAGCGACAAGATCCATGGGAAGGGAGAGTCTCG
CTTCCCCAACGGAAACAAGTACAGgtgagcaggaaaaattgaggtaatgg
ataattttcaggaggaaaagagtgatgcaagaaaccaagcaagggaagta
ggtgtgacggataggtggtgaagcctcttgacgaaactttagtgcttaac
ctaccctcactccatcctgtccttccattctcccttcttccttccacatc
tactcccagCGGCGAGTGGGTGAATGGCGTGATAAGCGGCATTGGCACCC
TCTTCATTGCCAACGGGGACAAGTACACTGGCGAGTGGAAGGATGGGATG
ATGCACGgtaagaaaatagagggggggaagggaaggaaggagagaggggt
gaagtcaagaaagcacgtgcgtttgacgctgaaaatacccatataattgc
cttattttcacaccattacacacatacagGGGCGGGCGTGTATACATGCG
CGGACGGCGACACGTACGAAGGTGGATGGATGGCTGgtacgtcctcccct
tcactccctcccttgtcactccctcctttttttctttaccccaatcccct
cccttccttcttccctcccttcctttctccctccctctcccactctccct
ccgtagACAAGCGACACGGACAGGGTATTATGCTGTACCTGTCTGAGGAC
GGCGCCACCAAAGAGAAATACGAGGGCGAGTGGCAAGAAGgtgggtgaaa
gacagacagccgggcagacactgagggacggcgggggagaagaggggatg
gaaaaaggggagagtccaaagcgtgcactgtggcagctgggctaggataa
ggtttagattccaggagatctcagcctttactcgcctggcccccctcaga
ccacttgctattgcatttcttggtctcttgtccattgctcgccctacttc
ctccctccttctccttccccgccccccccttcctcagACAAGATGCAGGG
CAAAGGCAAGTACTGGTACTCGGACGGATCGGTCTACGACGGAACCTGGC
ACGAGAGCAAGATGCACGGGAAGGGGGCCTACGTGTACCCCAACCATGAC
CGATATGAAGGGGAGTTCGTGGAGGACATGAAGCACGGgtaggtctcaag
gcaggcgggagggagggaaggagggaaggagggagagagggccagagatg
atggaaatcaagctcaaagaatgaatctcatacttagcccactcacgtcc
ccctcccccctccttcctttcccccctccctccctctctctctccctccc
tccctcctcgattagGTACGGCGTGCTTTGGTACCGCAACGGAGAGAAGT
ACGAGGGGTCCTGGAAGCAAGACACGGCCCACGGGAAGGGCACCCTGACC
TACGCTGGGGGCGACAAGTATGTGGGGGAGTGGAGGGAGGGGAAGAAGGA
GGGTCTGGGGGAGCTGCACTACGTGAATGGCGACGTCTTTAAGGGGGAAT
GGAGAAAAGATTTTGCGTGTGGACACGGAGTACTGGCCTACGTGAACGGG
GACGTGTACGAGGGGGAGTGGCTGAACGACAGGCGGCATGGCCAGGGGCG
GTTTGTCAGCAAGGAAGACGGGAAGACGTATGTGGGGGGGTGGAGGGACG
GGAGGCGGCACGGCAGTGGAGTGATGACGCTGGGGAAGGATGGTAAGGGG
GTGGAGGAGGGCGGGGATGTGCTGAAGGGGCAGTGGGAGCAAGGGACTCT
GGTGAACATCTCTCAATTCTGTTTTGCCAAGGACTCGCCCTGGAATGATC
CCAAGTATTAGGGCAAGTGTTGCGGAGAGAGGGAGGGAGGGTACGGGAGG
GAGAGAGGGAGGAGGGTGAAGGGAGAGGGAGGTTTTAGTCTGTATATTAG
ATATTGCATGTTGTTTTTCGACTGAGTCGCCTTCCCTTTAAGGGTTGCGG
GGAAAAGGAAGAAAGGAGTGGGCTGAGTGGTGGATGAAATGAGGATTTGA
AGATTCCCCTTCTGCAAGGCCACTGTGGCACAACTGAAGAAGGAAGAAAG
ATGAGAGGTAGGAAGAGAATCGATCCATTAAATCACGATTTACCGTGAAT
TTGCACATGAGCAATGGCAAGAAGGGAAGGAAAGATAGAGAGAGAGTTAT
GGGAGGGCGGCGTGCGGCATGGTTGAGGGGAAAGCACAGTTTAAAAGCCA
CAGACGAGGACCGAGCTACTTCTTCAGCAGATGGCAACACAAAGAACAAA
GGAGAGCGGTGAGCCTCTTGCAGGCGACTACTAATAAGATTCCGGGTCAC
TATAATTGCGTGGTGATTCCTGTGCACATAGAAATGTGTTTGGTGCTCAG
GTAAACATGATGGTACGGCCTGTATCTCCCAACTCCCACTCACAAATTGG
CACGTCGCCATGTGCATATTCCAGCAACGTGGTCTTGCGAATATAGCCCG
TGGCAGACCTCACAGCAGTAGCGCATATCCATTAAGCTCATCGAGGATAT
TATGGCAACAAAGAGGAAATAGGGTGGGAAGGCAACGGGTGTGAGAGTCG
GGGCAGGAGGAGGAGGGAGTCGATGCGGATAGTTTGATCTGTCGCAATTC
TCAAGCTTCTGCAAACGATTTACAAGATTCGCGGGGAGACTTCAGGCCGT
ACGCATTTTCGAAGGAGGAGGGGGACGAGGGGAGTGGGCGAGGGAGGCAA
AGAAGAGCAATAACAAAGCAGACCCGAAGACGTCGAGCAA
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protein sequence of NO10G00070.1

>NO10G00070.1-protein ID=NO10G00070.1-protein|Name=NO10G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MMITSYRGNILDGTLHGRGEAEYANGERFEGDWVHGKRQGQGTYTYADGS
VYTGQWDSDKIHGKGESRFPNGNKYSGEWVNGVISGIGTLFIANGDKYTG
EWKDGMMHGAGVYTCADGDTYEGGWMADKRHGQGIMLYLSEDGATKEKYE
GEWQEDKMQGKGKYWYSDGSVYDGTWHESKMHGKGAYVYPNHDRYEGEFV
EDMKHGYGVLWYRNGEKYEGSWKQDTAHGKGTLTYAGGDKYVGEWREGKK
EGLGELHYVNGDVFKGEWRKDFACGHGVLAYVNGDVYEGEWLNDRRHGQG
RFVSKEDGKTYVGGWRDGRRHGSGVMTLGKDGKGVEEGGDVLKGQWEQGT
LVNISQFCFAKDSPWNDPKY*
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Synonyms
Publications