NO10G00070.1, NO10G00070.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00070.1
Unique Name	NO10G00070.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2440
Alignment location	chr10:20538..24327 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:20538..24327 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G00070.1 vs.
Match: EWM25240.1 (phosphatidylinositol-4-phosphate 5 [Nannochloropsis gaditana])

HSP 1 Score: 561.2 bits (1445), Expect = 2.400e-156
Identity = 258/368 (70.11%), Postives = 293/368 (79.62%), Query Frame = 0

Query:    6 YRGNILDGTLHGRGEAEYANGERFEGDWVHGKRQGQGTYTYADGSVYTGQWDSDKIHGKGESRFPNGNKYSGEWV---NGVISGIGTLFIANGDKYTGEWKDGMMHGAGVYTCADGDTYEGGWMADKRHGQGIMLYLSEDGATKEKYEGEWQEDKMQGKGKYWYSDGSVYDGTWHESKMHGKGAYVYPNHDRYEGEFVEDMKHGYGVLWYRNGEKYEGSWKQDTAHGKGTLTYAGGDKYVGEWREGKKEGLGELHYVNGDVFKGEWRKDFACGHGVLAYVNGDVYEGEWLNDRRHGQGRFVSKEDGKTYVGGWRDGRRHGSGVMTLGKDGKGVEEGGDVLKGQWEQGTLVNISQFCFAKDSPWNDPKY 371
            Y G   +  +HG+GE+ +ANG ++ G+W  G   G+GT   A+G  YTG+W   K++    +  P   +    W+   +   SG   L   +      +    ++ G GVYTC DGDTYEGGWM DKRHGQG+MLYLSEDGATKEKYEGEW+EDKMQGKGKYWYSDGSVY+G W ESKMHG+G Y YPNHDRYEG+FVEDMK G+G+L YRNGEKYEGSWKQDTAHGKGTLTYAGGDKYVGEWREGKKEGLG LHYVNGDVFKGEWRKDFACGHGVLAY+NGDVYEGEWLNDRRHGQGRFV ++DGKTYVGGWR+GRRHG GVMTLGKD KG EEGGDVL+GQWE G LVN+ QFCFA+DSPWNDPKY
Sbjct:   95 YTGEWDNDKIHGKGESRFANGNKYSGEWTQGVINGRGTLFIANGDRYTGEWQDGKMNDMVMACGPEALRIVSRWLWPRHERYSGQAHLHALD----LHDLAMIIITGVGVYTCVDGDTYEGGWMCDKRHGQGVMLYLSEDGATKEKYEGEWEEDKMQGKGKYWYSDGSVYEGQWQESKMHGQGVYTYPNHDRYEGDFVEDMKQGHGILCYRNGEKYEGSWKQDTAHGKGTLTYAGGDKYVGEWREGKKEGLGALHYVNGDVFKGEWRKDFACGHGVLAYMNGDVYEGEWLNDRRHGQGRFVCRQDGKTYVGGWREGRRHGGGVMTLGKDEKGEEEGGDVLRGQWEHGVLVNVVQFCFARDSPWNDPKY 458

The following BLAST results are available for this feature:

BLAST of NO10G00070.1 vs.

BLAST of NO10G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25240.1	2.400e-156	70.11	phosphatidylinositol-4-phosphate 5 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00070	NO10G00070	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00070.1	NO10G00070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00070.1.cds1	NO10G00070.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds2	NO10G00070.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds3	NO10G00070.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds4	NO10G00070.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds5	NO10G00070.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds6	NO10G00070.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds7	NO10G00070.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds8	NO10G00070.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00070.1.cds9	NO10G00070.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:20538..24327-
coding sequence from alignment at chr10:20538..24327-

mRNA sequence

>NO10G00070.1 ID=NO10G00070.1|Name=NO10G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2440bp
CGTGGTTGCTTTTAGGGTTGCCCTGTGCGTTTTTAGACCTTACAGTCAAA
CCGTCATACACCCACGCACCTACAGATACACGGAGGTCCAGAACATGCCC
CCTTGCCTGGCTCTGCCGGTAGTCACAGAGCTCGCCGCAATGCGCTTGAA
GGTTCCTCGGCGACTGGCGAGCTCGACACATCATCGCAAGCGGCCGGCCA
TCCTAACCCGACTCAAGCTCTCCTTGACGTCCACAACTTACGCACGCAAG
TACTTTTGCACACAAGCACAGGAACCAGCCAAGGTAGGGCGAGACGCAGC
CTTTCCTGCCTTTTCTACTCCAATTCCAAAGAGAGCGAGAGCGGCAGTAG
CAGCAGCGCGGGCGACCGGGCAACGCCGCGAGCAAGGAGTGATCAGCCAT
GATGATCACCAGCTACCGAGGTAACATTTTGGATGGGACTCTGCATGGAC
GAGGCGAGGCGGAGTACGCCAACGGGGAGCGCTTCGAAGGGGACTGGGTG
CATGGCAAGCGGCAAGGCCAGGGCACCTACACCTATGCCGACGGGAGTGT
CTACACAGGGCAATGGGACAGCGACAAGATCCATGGGAAGGGAGAGTCTC
GCTTCCCCAACGGAAACAAGTACAGCGGCGAGTGGGTGAATGGCGTGATA
AGCGGCATTGGCACCCTCTTCATTGCCAACGGGGACAAGTACACTGGCGA
GTGGAAGGATGGGATGATGCACGGGGCGGGCGTGTATACATGCGCGGACG
GCGACACGTACGAAGGTGGATGGATGGCTGACAAGCGACACGGACAGGGT
ATTATGCTGTACCTGTCTGAGGACGGCGCCACCAAAGAGAAATACGAGGG
CGAGTGGCAAGAAGACAAGATGCAGGGCAAAGGCAAGTACTGGTACTCGG
ACGGATCGGTCTACGACGGAACCTGGCACGAGAGCAAGATGCACGGGAAG
GGGGCCTACGTGTACCCCAACCATGACCGATATGAAGGGGAGTTCGTGGA
GGACATGAAGCACGGGTACGGCGTGCTTTGGTACCGCAACGGAGAGAAGT
ACGAGGGGTCCTGGAAGCAAGACACGGCCCACGGGAAGGGCACCCTGACC
TACGCTGGGGGCGACAAGTATGTGGGGGAGTGGAGGGAGGGGAAGAAGGA
GGGTCTGGGGGAGCTGCACTACGTGAATGGCGACGTCTTTAAGGGGGAAT
GGAGAAAAGATTTTGCGTGTGGACACGGAGTACTGGCCTACGTGAACGGG
GACGTGTACGAGGGGGAGTGGCTGAACGACAGGCGGCATGGCCAGGGGCG
GTTTGTCAGCAAGGAAGACGGGAAGACGTATGTGGGGGGGTGGAGGGACG
GGAGGCGGCACGGCAGTGGAGTGATGACGCTGGGGAAGGATGGTAAGGGG
GTGGAGGAGGGCGGGGATGTGCTGAAGGGGCAGTGGGAGCAAGGGACTCT
GGTGAACATCTCTCAATTCTGTTTTGCCAAGGACTCGCCCTGGAATGATC
CCAAGTATTAGGGCAAGTGTTGCGGAGAGAGGGAGGGAGGGTACGGGAGG
GAGAGAGGGAGGAGGGTGAAGGGAGAGGGAGGTTTTAGTCTGTATATTAG
ATATTGCATGTTGTTTTTCGACTGAGTCGCCTTCCCTTTAAGGGTTGCGG
GGAAAAGGAAGAAAGGAGTGGGCTGAGTGGTGGATGAAATGAGGATTTGA
AGATTCCCCTTCTGCAAGGCCACTGTGGCACAACTGAAGAAGGAAGAAAG
ATGAGAGGTAGGAAGAGAATCGATCCATTAAATCACGATTTACCGTGAAT
TTGCACATGAGCAATGGCAAGAAGGGAAGGAAAGATAGAGAGAGAGTTAT
GGGAGGGCGGCGTGCGGCATGGTTGAGGGGAAAGCACAGTTTAAAAGCCA
CAGACGAGGACCGAGCTACTTCTTCAGCAGATGGCAACACAAAGAACAAA
GGAGAGCGGTGAGCCTCTTGCAGGCGACTACTAATAAGATTCCGGGTCAC
TATAATTGCGTGGTGATTCCTGTGCACATAGAAATGTGTTTGGTGCTCAG
GTAAACATGATGGTACGGCCTGTATCTCCCAACTCCCACTCACAAATTGG
CACGTCGCCATGTGCATATTCCAGCAACGTGGTCTTGCGAATATAGCCCG
TGGCAGACCTCACAGCAGTAGCGCATATCCATTAAGCTCATCGAGGATAT
TATGGCAACAAAGAGGAAATAGGGTGGGAAGGCAACGGGTGTGAGAGTCG
GGGCAGGAGGAGGAGGGAGTCGATGCGGATAGTTTGATCTGTCGCAATTC
TCAAGCTTCTGCAAACGATTTACAAGATTCGCGGGGAGACTTCAGGCCGT
ACGCATTTTCGAAGGAGGAGGGGGACGAGGGGAGTGGGCGAGGGAGGCAA
AGAAGAGCAATAACAAAGCAGACCCGAAGACGTCGAGCAA

protein sequence of NO10G00070.1

>NO10G00070.1-protein ID=NO10G00070.1-protein|Name=NO10G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MMITSYRGNILDGTLHGRGEAEYANGERFEGDWVHGKRQGQGTYTYADGS
VYTGQWDSDKIHGKGESRFPNGNKYSGEWVNGVISGIGTLFIANGDKYTG
EWKDGMMHGAGVYTCADGDTYEGGWMADKRHGQGIMLYLSEDGATKEKYE
GEWQEDKMQGKGKYWYSDGSVYDGTWHESKMHGKGAYVYPNHDRYEGEFV
EDMKHGYGVLWYRNGEKYEGSWKQDTAHGKGTLTYAGGDKYVGEWREGKK
EGLGELHYVNGDVFKGEWRKDFACGHGVLAYVNGDVYEGEWLNDRRHGQG
RFVSKEDGKTYVGGWRDGRRHGSGVMTLGKDGKGVEEGGDVLKGQWEQGT
LVNISQFCFAKDSPWNDPKY*

mRNA from alignment at chr10:20538..24327-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00070.1 ID=NO10G00070.1|Name=NO10G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=3790bp|location=Sequence derived from alignment at chr10:20538..24327- (Nannochloropsis oceanica)
CGTGGTTGCTTTTAGGGTTGCCCTGTGCGTTTTTAGACCTTACAGTCAAA
CCGTCATACACCCACGCACCTACAGATACACGGAGGTCCAGAACATGCCC
CCTTGCCTGGCTCTGCCGGTAGTCACAGAGCTCGCCGCAATGCGCTTGAA
GGTTCCTCGGCGACTGGCGAGCTCGACACATCATCGCAAGCGGCCGGCCA
TCCTAACCCGACTCAAGCTCTCCTTGACGTCCACAACTTACGCACGCAAG
TACTTTTGCACACAAGCACAGGAACCAGCCAAGGTAGGGCGAGACGCAGC
CTTTCCTGCCTTTTCTACTCCAATTCCAAAGAGAGCGAGAGCGGCAGTAG
CAGCAGCGCGGGCGACCGGGCAACGCCGCGAGCAAGGAGTGATCAGCCAT
GATGATCACCAGCTACCGGTAGGACGGAGAGGGAAGAGAACCCGAGGAGG
GGGAGAGAGATAAAGGAAAAAAGGAGGACATGCCGTCGTCTTGGTGGAAA
GGGGTGGTGGGAGAAGGGGCTCTCGTAGGAAGGGCAGTCATCAGCAGGGC
TTGGTCGTCCTTGTGTTGCTCCCTCGTCTTGTCATTCTATTCTCCTACTC
ACTCCGCTTTCCTTCTAAATGTGTATGCACAATATCTTTGAATCATTTCC
CAGAGGTAACATTTTGGATGGGACTCTGCATGGACGAGGCGAGGCGGAGT
ACGCCAACGGGGAGCGCTTCGAAGGGGTGAGTCAAATAGCAAGCGGCAGG
CCGTGTGGGGGGGAGGGAAGGCGCCTCTTTACCCTCCGGGAAAACGGGGA
GCTAAATATAATACTGCAATCAATAGAGTGATGCATGCAGTCTGGCCAGC
TTTGTGCATGTTGTGGCCTGCCTTTCCCTTCTTCTCTCACTTTCTCCTAT
TCCTCCTTGTGCAGGACTGGGTGCATGGCAAGCGGCAAGGCCAGGGCACC
TACACCTATGCCGACGGGAGTGTCTACACAGGTGTGTGCAACATCACATA
CTCCTCGTTTTCACTTTTTGTATCCTCTCACTACTCCGCTCTGTCTCCTC
CTTGCAGGGCAATGGGACAGCGACAAGATCCATGGGAAGGGAGAGTCTCG
CTTCCCCAACGGAAACAAGTACAGGTGAGCAGGAAAAATTGAGGTAATGG
ATAATTTTCAGGAGGAAAAGAGTGATGCAAGAAACCAAGCAAGGGAAGTA
GGTGTGACGGATAGGTGGTGAAGCCTCTTGACGAAACTTTAGTGCTTAAC
CTACCCTCACTCCATCCTGTCCTTCCATTCTCCCTTCTTCCTTCCACATC
TACTCCCAGCGGCGAGTGGGTGAATGGCGTGATAAGCGGCATTGGCACCC
TCTTCATTGCCAACGGGGACAAGTACACTGGCGAGTGGAAGGATGGGATG
ATGCACGGTAAGAAAATAGAGGGGGGGAAGGGAAGGAAGGAGAGAGGGGT
GAAGTCAAGAAAGCACGTGCGTTTGACGCTGAAAATACCCATATAATTGC
CTTATTTTCACACCATTACACACATACAGGGGCGGGCGTGTATACATGCG
CGGACGGCGACACGTACGAAGGTGGATGGATGGCTGGTACGTCCTCCCCT
TCACTCCCTCCCTTGTCACTCCCTCCTTTTTTTCTTTACCCCAATCCCCT
CCCTTCCTTCTTCCCTCCCTTCCTTTCTCCCTCCCTCTCCCACTCTCCCT
CCGTAGACAAGCGACACGGACAGGGTATTATGCTGTACCTGTCTGAGGAC
GGCGCCACCAAAGAGAAATACGAGGGCGAGTGGCAAGAAGGTGGGTGAAA
GACAGACAGCCGGGCAGACACTGAGGGACGGCGGGGGAGAAGAGGGGATG
GAAAAAGGGGAGAGTCCAAAGCGTGCACTGTGGCAGCTGGGCTAGGATAA
GGTTTAGATTCCAGGAGATCTCAGCCTTTACTCGCCTGGCCCCCCTCAGA
CCACTTGCTATTGCATTTCTTGGTCTCTTGTCCATTGCTCGCCCTACTTC
CTCCCTCCTTCTCCTTCCCCGCCCCCCCCTTCCTCAGACAAGATGCAGGG
CAAAGGCAAGTACTGGTACTCGGACGGATCGGTCTACGACGGAACCTGGC
ACGAGAGCAAGATGCACGGGAAGGGGGCCTACGTGTACCCCAACCATGAC
CGATATGAAGGGGAGTTCGTGGAGGACATGAAGCACGGGTAGGTCTCAAG
GCAGGCGGGAGGGAGGGAAGGAGGGAAGGAGGGAGAGAGGGCCAGAGATG
ATGGAAATCAAGCTCAAAGAATGAATCTCATACTTAGCCCACTCACGTCC
CCCTCCCCCCTCCTTCCTTTCCCCCCTCCCTCCCTCTCTCTCTCCCTCCC
TCCCTCCTCGATTAGGTACGGCGTGCTTTGGTACCGCAACGGAGAGAAGT
ACGAGGGGTCCTGGAAGCAAGACACGGCCCACGGGAAGGGCACCCTGACC
TACGCTGGGGGCGACAAGTATGTGGGGGAGTGGAGGGAGGGGAAGAAGGA
GGGTCTGGGGGAGCTGCACTACGTGAATGGCGACGTCTTTAAGGGGGAAT
GGAGAAAAGATTTTGCGTGTGGACACGGAGTACTGGCCTACGTGAACGGG
GACGTGTACGAGGGGGAGTGGCTGAACGACAGGCGGCATGGCCAGGGGCG
GTTTGTCAGCAAGGAAGACGGGAAGACGTATGTGGGGGGGTGGAGGGACG
GGAGGCGGCACGGCAGTGGAGTGATGACGCTGGGGAAGGATGGTAAGGGG
GTGGAGGAGGGCGGGGATGTGCTGAAGGGGCAGTGGGAGCAAGGGACTCT
GGTGAACATCTCTCAATTCTGTTTTGCCAAGGACTCGCCCTGGAATGATC
CCAAGTATTAGGGCAAGTGTTGCGGAGAGAGGGAGGGAGGGTACGGGAGG
GAGAGAGGGAGGAGGGTGAAGGGAGAGGGAGGTTTTAGTCTGTATATTAG
ATATTGCATGTTGTTTTTCGACTGAGTCGCCTTCCCTTTAAGGGTTGCGG
GGAAAAGGAAGAAAGGAGTGGGCTGAGTGGTGGATGAAATGAGGATTTGA
AGATTCCCCTTCTGCAAGGCCACTGTGGCACAACTGAAGAAGGAAGAAAG
ATGAGAGGTAGGAAGAGAATCGATCCATTAAATCACGATTTACCGTGAAT
TTGCACATGAGCAATGGCAAGAAGGGAAGGAAAGATAGAGAGAGAGTTAT
GGGAGGGCGGCGTGCGGCATGGTTGAGGGGAAAGCACAGTTTAAAAGCCA
CAGACGAGGACCGAGCTACTTCTTCAGCAGATGGCAACACAAAGAACAAA
GGAGAGCGGTGAGCCTCTTGCAGGCGACTACTAATAAGATTCCGGGTCAC
TATAATTGCGTGGTGATTCCTGTGCACATAGAAATGTGTTTGGTGCTCAG
GTAAACATGATGGTACGGCCTGTATCTCCCAACTCCCACTCACAAATTGG
CACGTCGCCATGTGCATATTCCAGCAACGTGGTCTTGCGAATATAGCCCG
TGGCAGACCTCACAGCAGTAGCGCATATCCATTAAGCTCATCGAGGATAT
TATGGCAACAAAGAGGAAATAGGGTGGGAAGGCAACGGGTGTGAGAGTCG
GGGCAGGAGGAGGAGGGAGTCGATGCGGATAGTTTGATCTGTCGCAATTC
TCAAGCTTCTGCAAACGATTTACAAGATTCGCGGGGAGACTTCAGGCCGT
ACGCATTTTCGAAGGAGGAGGGGGACGAGGGGAGTGGGCGAGGGAGGCAA
AGAAGAGCAATAACAAAGCAGACCCGAAGACGTCGAGCAA

Coding sequence (CDS) from alignment at chr10:20538..24327-

>NO10G00070.1 ID=NO10G00070.1|Name=NO10G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr10:20538..24327- (Nannochloropsis oceanica)
ATGATGATCACCAGCTACCGAGGTAACATTTTGGATGGGACTCTGCATGG
ACGAGGCGAGGCGGAGTACGCCAACGGGGAGCGCTTCGAAGGGGACTGGG
TGCATGGCAAGCGGCAAGGCCAGGGCACCTACACCTATGCCGACGGGAGT
GTCTACACAGGGCAATGGGACAGCGACAAGATCCATGGGAAGGGAGAGTC
TCGCTTCCCCAACGGAAACAAGTACAGCGGCGAGTGGGTGAATGGCGTGA
TAAGCGGCATTGGCACCCTCTTCATTGCCAACGGGGACAAGTACACTGGC
GAGTGGAAGGATGGGATGATGCACGGGGCGGGCGTGTATACATGCGCGGA
CGGCGACACGTACGAAGGTGGATGGATGGCTGACAAGCGACACGGACAGG
GTATTATGCTGTACCTGTCTGAGGACGGCGCCACCAAAGAGAAATACGAG
GGCGAGTGGCAAGAAGACAAGATGCAGGGCAAAGGCAAGTACTGGTACTC
GGACGGATCGGTCTACGACGGAACCTGGCACGAGAGCAAGATGCACGGGA
AGGGGGCCTACGTGTACCCCAACCATGACCGATATGAAGGGGAGTTCGTG
GAGGACATGAAGCACGGGTACGGCGTGCTTTGGTACCGCAACGGAGAGAA
GTACGAGGGGTCCTGGAAGCAAGACACGGCCCACGGGAAGGGCACCCTGA
CCTACGCTGGGGGCGACAAGTATGTGGGGGAGTGGAGGGAGGGGAAGAAG
GAGGGTCTGGGGGAGCTGCACTACGTGAATGGCGACGTCTTTAAGGGGGA
ATGGAGAAAAGATTTTGCGTGTGGACACGGAGTACTGGCCTACGTGAACG
GGGACGTGTACGAGGGGGAGTGGCTGAACGACAGGCGGCATGGCCAGGGG
CGGTTTGTCAGCAAGGAAGACGGGAAGACGTATGTGGGGGGGTGGAGGGA
CGGGAGGCGGCACGGCAGTGGAGTGATGACGCTGGGGAAGGATGGTAAGG
GGGTGGAGGAGGGCGGGGATGTGCTGAAGGGGCAGTGGGAGCAAGGGACT
CTGGTGAACATCTCTCAATTCTGTTTTGCCAAGGACTCGCCCTGGAATGA
TCCCAAGTATTAG

Synonyms

Publications