NO10G00060, NO10G00060 (gene) Nannochloropsis oceanica

Overview
NameNO10G00060
Unique NameNO10G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1699
Alignment locationchr10:18839..20537 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:18839..20537 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G00060 vs. NCBI_GenBank
Match: EWM25231.1 (hypothetical protein Naga_100089g18 [Nannochloropsis gaditana])

HSP 1 Score: 174.1 bits (440), Expect = 5.400e-40
Identity = 103/175 (58.86%), Postives = 124/175 (70.86%), Query Frame = 0 
Query:   60 KWIDAELMKQKELEKRQGKQQGTATGSGPDLFPSPTGRISSNKEKDKKFLSQARQQLQGEVDTLIERLTGIYKQVKDQSNKITTFGVAEFNPKVATLTDQIGVELESLLGRLKGLKAALRDGEGEAGGEAAGGTGKGTPDFLVTQSFALKALSKDLEGLLFLIEAREREVDILLR 235
            KWID EL+KQKELEKRQ KQQ          F S  G   +N++K K  + QAR QLQ EVDTLI RLTGIY QVKDQSNKI TFGVAEFNPKVA+LT +IG +LESLL +L+ L+ +L++GE +AG     GTG      L  ++  LK+LS DLE LL LIE+RE+EVD+LLR
Sbjct:  134 KWIDPELIKQKELEKRQSKQQRDGA------FTSKQG--LNNRDKSKHMMRQARAQLQVEVDTLIGRLTGIYAQVKDQSNKIVTFGVAEFNPKVASLTAEIGAKLESLLQQLEELRGSLKEGEEDAGVAGGVGTGSRRESDLSLETSTLKSLSNDLESLLQLIESREQEVDVLLR 300
The following BLAST results are available for this feature:
BLAST of NO10G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25231.15.400e-4058.86hypothetical protein Naga_100089g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007656NSK007656Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00060.1NO10G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612973gene_10819Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100089g18gene5277Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00060.1NO10G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00060 ID=NO10G00060|Name=NO10G00060|organism=Nannochloropsis oceanica|type=gene|length=1699bp
CGTTCATACGCGAAGCACGTTTGGAACTCAGTGAGGGACGTCTGTTGTTA
CTGATTGAGCGAGCAGGACAACGTACTTAACATATATCAGCACGACCACA
TGAGCCTTGAACTGTTTGATATCGTTTAGATTATCTAACGCAAGTGCCTC
ACTATGGTGCACCAACGGGTCATTTAATTGCAGGCACTTATAGCCGCTCC
CCTGCGTCGAGCTCTTGTTGGTCTTCCCTCACACAATGACGGGCGACAGC
ATGATTCTCACGACAGCACCTATGACGTTCCCCCTTCATTCAGACACTCA
CCCTCGCCACAAACACGATCCGCGCACACACAATTAAAATCTAGTCGCCT
AGCTTGCCCTCCACGTGTGTAACAGCGAGCGTGCAGTCTGGAAACCATGC
ATAGCCTCATCATTCAAGCTGCTCTTCTTCTATGCTGCCTTCTGTATTCT
GCCGCCTTCCTCTTGCCCTGTTCCTCGTCTTGTTCACTCCTCTCCAGCTC
GACGACGAGACTACACGCATCACCGTACAATTATCCCCCTCCCCCGGGGT
CTGGCAGGCGTAGAAGGGCTAGTAAATGGATTGATGCCGAGCTGATGAAG
CAAAAGGAGTTGGAGAAGCGCCAAGGCAAGCAACAGGGGACTGCCACCGG
CTCGGGGCCTGACCTGTTTCCCTCCCCAACAGGCAGAATCAGCAGCAACA
AGGAGAAGGACAAAAAATTTCTTAGTCAGGCGCGACAGCAGTTGCAAGGG
GAAGTGGACACGTTGATCGAGCGGCTGACTGGCATCTACAAGCAGGTCAA
GGACCAAAGCAACAAGATCACAACCTTTGGCGTGGCCGAGTTCAACCCCA
AGGTGGCCACGTTAACGGACCAGATTGGAGTCGAGCTTGAAAGCTTGCTA
GGGCGCTTGAAGGGCTTGAAGGCAGCACTGAGGGACGGAGAGGGGGAGGC
CGGGGGGGAAGCAGCGGGAGGAACAGGGAAAGGGACACCAGATTTTTTGG
TGACGCAGAGTTTTGCTTTGAAGGCTTTGAGCAAGGACTTGGAGGGGCTC
CTTTTCTTGATCGAGGCCCGAGAACGGGAGGTGGACATCTTATTGCGATC
GCTGGGCATGGAAGAGGGAGGAGAGGAGGACTGAGAGAAGCTTTGTGGAG
GAGAAGATGGACGGAGAGACAGAAGCAGGGTTTCCAGACCTCATAGCCTT
TGTACATAGAGGCAAGTCTATGGGATCCTATGTATGGGTATCTTATATGA
CGGGTGGCGGGGGAGAAACATACGGGGAAGAGTGATGGGAGAGAGGGAGG
GGCTGGGGTGTAGTGAATGCTTCTTGCTTTTTAGAGGCGGGACATTGGAG
CTGCAGTTGCTCTGCAACCTGACTGGGAATGGAGGGAAGGAGTTGAACAA
AGGGAGTGATGATCTAGGAGGAGACTTATCATCTCCTGCGCTCGCTGATA
ACGTGTGTGGAACAAGCGTAGGGTGAGCGTTGTTTGGATGTACAGTGCAC
CACCACGACGGGGTTCCGGCCTGGATTACCTCTGAGAGGAATGTCTTCAA
TATGTACATAGGATGGTGGGAGGTGGGCGCATAGGGAGGAAGCGATATAG
TTAAGAGGCTTCCATAGATATATTAAGAGCGGATGAGCACAAAAGATGAG
TGGAAGGACGAAGAAGGGAAGGGAATAAAACGTAGACGATGAGATGGGT
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protein sequence of NO10G00060.1

>NO10G00060.1-protein ID=NO10G00060.1-protein|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MHSLIIQAALLLCCLLYSAAFLLPCSSSCSLLSSSTTRLHASPYNYPPPP
GSGRRRRASKWIDAELMKQKELEKRQGKQQGTATGSGPDLFPSPTGRISS
NKEKDKKFLSQARQQLQGEVDTLIERLTGIYKQVKDQSNKITTFGVAEFN
PKVATLTDQIGVELESLLGRLKGLKAALRDGEGEAGGEAAGGTGKGTPDF
LVTQSFALKALSKDLEGLLFLIEAREREVDILLRSLGMEEGGEED*
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Synonyms
Publications