NO10G00060.1, NO10G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00060.1
Unique NameNO10G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1699
Alignment locationchr10:18839..20537 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:18839..20537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G00060.1 vs.
Match: EWM25231.1 (hypothetical protein Naga_100089g18 [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 5.900e-47
Identity = 117/197 (59.39%), Postives = 138/197 (70.05%), Query Frame = 0
Query:   38 RLHASPYNYPPPPGSGRRRRASKWIDAELMKQKELEKRQGKQQGTATGSGPDLFPSPTGRISSNKEKDKKFLSQARQQLQGEVDTLIERLTGIYKQVKDQSNKITTFGVAEFNPKVATLTDQIGVELESLLGRLKGLKAALRDGEGEAGGEAAGGTGKGTPDFLVTQSFALKALSKDLEGLLFLIEAREREVDILLR 235
            R  ASPYN P PP  G RRR SKWID EL+KQKELEKRQ KQQ          F S  G   +N++K K  + QAR QLQ EVDTLI RLTGIY QVKDQSNKI TFGVAEFNPKVA+LT +IG +LESLL +L+ L+ +L++GE +AG     GTG      L  ++  LK+LS DLE LL LIE+RE+EVD+LLR
Sbjct:  112 RQKASPYNTPFPPPPGGRRRGSKWIDPELIKQKELEKRQSKQQRDGA------FTSKQGL--NNRDKSKHMMRQARAQLQVEVDTLIGRLTGIYAQVKDQSNKIVTFGVAEFNPKVASLTAEIGAKLESLLQQLEELRGSLKEGEEDAGVAGGVGTGSRRESDLSLETSTLKSLSNDLESLLQLIESREQEVDVLLR 300          
The following BLAST results are available for this feature:
BLAST of NO10G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25231.15.900e-4759.39hypothetical protein Naga_100089g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00060NO10G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00060.1NO10G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00060.1.cds1NO10G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00060.1 ID=NO10G00060.1|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp
CGTTCATACGCGAAGCACGTTTGGAACTCAGTGAGGGACGTCTGTTGTTA
CTGATTGAGCGAGCAGGACAACGTACTTAACATATATCAGCACGACCACA
TGAGCCTTGAACTGTTTGATATCGTTTAGATTATCTAACGCAAGTGCCTC
ACTATGGTGCACCAACGGGTCATTTAATTGCAGGCACTTATAGCCGCTCC
CCTGCGTCGAGCTCTTGTTGGTCTTCCCTCACACAATGACGGGCGACAGC
ATGATTCTCACGACAGCACCTATGACGTTCCCCCTTCATTCAGACACTCA
CCCTCGCCACAAACACGATCCGCGCACACACAATTAAAATCTAGTCGCCT
AGCTTGCCCTCCACGTGTGTAACAGCGAGCGTGCAGTCTGGAAACCATGC
ATAGCCTCATCATTCAAGCTGCTCTTCTTCTATGCTGCCTTCTGTATTCT
GCCGCCTTCCTCTTGCCCTGTTCCTCGTCTTGTTCACTCCTCTCCAGCTC
GACGACGAGACTACACGCATCACCGTACAATTATCCCCCTCCCCCGGGGT
CTGGCAGGCGTAGAAGGGCTAGTAAATGGATTGATGCCGAGCTGATGAAG
CAAAAGGAGTTGGAGAAGCGCCAAGGCAAGCAACAGGGGACTGCCACCGG
CTCGGGGCCTGACCTGTTTCCCTCCCCAACAGGCAGAATCAGCAGCAACA
AGGAGAAGGACAAAAAATTTCTTAGTCAGGCGCGACAGCAGTTGCAAGGG
GAAGTGGACACGTTGATCGAGCGGCTGACTGGCATCTACAAGCAGGTCAA
GGACCAAAGCAACAAGATCACAACCTTTGGCGTGGCCGAGTTCAACCCCA
AGGTGGCCACGTTAACGGACCAGATTGGAGTCGAGCTTGAAAGCTTGCTA
GGGCGCTTGAAGGGCTTGAAGGCAGCACTGAGGGACGGAGAGGGGGAGGC
CGGGGGGGAAGCAGCGGGAGGAACAGGGAAAGGGACACCAGATTTTTTGG
TGACGCAGAGTTTTGCTTTGAAGGCTTTGAGCAAGGACTTGGAGGGGCTC
CTTTTCTTGATCGAGGCCCGAGAACGGGAGGTGGACATCTTATTGCGATC
GCTGGGCATGGAAGAGGGAGGAGAGGAGGACTGAGAGAAGCTTTGTGGAG
GAGAAGATGGACGGAGAGACAGAAGCAGGGTTTCCAGACCTCATAGCCTT
TGTACATAGAGGCAAGTCTATGGGATCCTATGTATGGGTATCTTATATGA
CGGGTGGCGGGGGAGAAACATACGGGGAAGAGTGATGGGAGAGAGGGAGG
GGCTGGGGTGTAGTGAATGCTTCTTGCTTTTTAGAGGCGGGACATTGGAG
CTGCAGTTGCTCTGCAACCTGACTGGGAATGGAGGGAAGGAGTTGAACAA
AGGGAGTGATGATCTAGGAGGAGACTTATCATCTCCTGCGCTCGCTGATA
ACGTGTGTGGAACAAGCGTAGGGTGAGCGTTGTTTGGATGTACAGTGCAC
CACCACGACGGGGTTCCGGCCTGGATTACCTCTGAGAGGAATGTCTTCAA
TATGTACATAGGATGGTGGGAGGTGGGCGCATAGGGAGGAAGCGATATAG
TTAAGAGGCTTCCATAGATATATTAAGAGCGGATGAGCACAAAAGATGAG
TGGAAGGACGAAGAAGGGAAGGGAATAAAACGTAGACGATGAGATGGGT
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protein sequence of NO10G00060.1

>NO10G00060.1-protein ID=NO10G00060.1-protein|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MHSLIIQAALLLCCLLYSAAFLLPCSSSCSLLSSSTTRLHASPYNYPPPP
GSGRRRRASKWIDAELMKQKELEKRQGKQQGTATGSGPDLFPSPTGRISS
NKEKDKKFLSQARQQLQGEVDTLIERLTGIYKQVKDQSNKITTFGVAEFN
PKVATLTDQIGVELESLLGRLKGLKAALRDGEGEAGGEAAGGTGKGTPDF
LVTQSFALKALSKDLEGLLFLIEAREREVDILLRSLGMEEGGEED*
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mRNA from alignment at chr10:18839..20537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00060.1 ID=NO10G00060.1|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp|location=Sequence derived from alignment at chr10:18839..20537+ (Nannochloropsis oceanica)
CGTTCATACGCGAAGCACGTTTGGAACTCAGTGAGGGACGTCTGTTGTTA CTGATTGAGCGAGCAGGACAACGTACTTAACATATATCAGCACGACCACA TGAGCCTTGAACTGTTTGATATCGTTTAGATTATCTAACGCAAGTGCCTC ACTATGGTGCACCAACGGGTCATTTAATTGCAGGCACTTATAGCCGCTCC CCTGCGTCGAGCTCTTGTTGGTCTTCCCTCACACAATGACGGGCGACAGC ATGATTCTCACGACAGCACCTATGACGTTCCCCCTTCATTCAGACACTCA CCCTCGCCACAAACACGATCCGCGCACACACAATTAAAATCTAGTCGCCT AGCTTGCCCTCCACGTGTGTAACAGCGAGCGTGCAGTCTGGAAACCATGC ATAGCCTCATCATTCAAGCTGCTCTTCTTCTATGCTGCCTTCTGTATTCT GCCGCCTTCCTCTTGCCCTGTTCCTCGTCTTGTTCACTCCTCTCCAGCTC GACGACGAGACTACACGCATCACCGTACAATTATCCCCCTCCCCCGGGGT CTGGCAGGCGTAGAAGGGCTAGTAAATGGATTGATGCCGAGCTGATGAAG CAAAAGGAGTTGGAGAAGCGCCAAGGCAAGCAACAGGGGACTGCCACCGG CTCGGGGCCTGACCTGTTTCCCTCCCCAACAGGCAGAATCAGCAGCAACA AGGAGAAGGACAAAAAATTTCTTAGTCAGGCGCGACAGCAGTTGCAAGGG GAAGTGGACACGTTGATCGAGCGGCTGACTGGCATCTACAAGCAGGTCAA GGACCAAAGCAACAAGATCACAACCTTTGGCGTGGCCGAGTTCAACCCCA AGGTGGCCACGTTAACGGACCAGATTGGAGTCGAGCTTGAAAGCTTGCTA GGGCGCTTGAAGGGCTTGAAGGCAGCACTGAGGGACGGAGAGGGGGAGGC CGGGGGGGAAGCAGCGGGAGGAACAGGGAAAGGGACACCAGATTTTTTGG TGACGCAGAGTTTTGCTTTGAAGGCTTTGAGCAAGGACTTGGAGGGGCTC CTTTTCTTGATCGAGGCCCGAGAACGGGAGGTGGACATCTTATTGCGATC GCTGGGCATGGAAGAGGGAGGAGAGGAGGACTGAGAGAAGCTTTGTGGAG GAGAAGATGGACGGAGAGACAGAAGCAGGGTTTCCAGACCTCATAGCCTT TGTACATAGAGGCAAGTCTATGGGATCCTATGTATGGGTATCTTATATGA CGGGTGGCGGGGGAGAAACATACGGGGAAGAGTGATGGGAGAGAGGGAGG GGCTGGGGTGTAGTGAATGCTTCTTGCTTTTTAGAGGCGGGACATTGGAG CTGCAGTTGCTCTGCAACCTGACTGGGAATGGAGGGAAGGAGTTGAACAA AGGGAGTGATGATCTAGGAGGAGACTTATCATCTCCTGCGCTCGCTGATA ACGTGTGTGGAACAAGCGTAGGGTGAGCGTTGTTTGGATGTACAGTGCAC CACCACGACGGGGTTCCGGCCTGGATTACCTCTGAGAGGAATGTCTTCAA TATGTACATAGGATGGTGGGAGGTGGGCGCATAGGGAGGAAGCGATATAG TTAAGAGGCTTCCATAGATATATTAAGAGCGGATGAGCACAAAAGATGAG TGGAAGGACGAAGAAGGGAAGGGAATAAAACGTAGACGATGAGATGGGT
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Coding sequence (CDS) from alignment at chr10:18839..20537+

>NO10G00060.1 ID=NO10G00060.1|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr10:18839..20537+ (Nannochloropsis oceanica)
ATGCATAGCCTCATCATTCAAGCTGCTCTTCTTCTATGCTGCCTTCTGTA
TTCTGCCGCCTTCCTCTTGCCCTGTTCCTCGTCTTGTTCACTCCTCTCCA
GCTCGACGACGAGACTACACGCATCACCGTACAATTATCCCCCTCCCCCG
GGGTCTGGCAGGCGTAGAAGGGCTAGTAAATGGATTGATGCCGAGCTGAT
GAAGCAAAAGGAGTTGGAGAAGCGCCAAGGCAAGCAACAGGGGACTGCCA
CCGGCTCGGGGCCTGACCTGTTTCCCTCCCCAACAGGCAGAATCAGCAGC
AACAAGGAGAAGGACAAAAAATTTCTTAGTCAGGCGCGACAGCAGTTGCA
AGGGGAAGTGGACACGTTGATCGAGCGGCTGACTGGCATCTACAAGCAGG
TCAAGGACCAAAGCAACAAGATCACAACCTTTGGCGTGGCCGAGTTCAAC
CCCAAGGTGGCCACGTTAACGGACCAGATTGGAGTCGAGCTTGAAAGCTT
GCTAGGGCGCTTGAAGGGCTTGAAGGCAGCACTGAGGGACGGAGAGGGGG
AGGCCGGGGGGGAAGCAGCGGGAGGAACAGGGAAAGGGACACCAGATTTT
TTGGTGACGCAGAGTTTTGCTTTGAAGGCTTTGAGCAAGGACTTGGAGGG
GCTCCTTTTCTTGATCGAGGCCCGAGAACGGGAGGTGGACATCTTATTGC
GATCGCTGGGCATGGAAGAGGGAGGAGAGGAGGACTGA
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Synonyms
Publications