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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:18839..20537 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00060.1 vs.
Match: EWM25231.1 (hypothetical protein Naga_100089g18 [Nannochloropsis gaditana]) HSP 1 Score: 197.2 bits (500), Expect = 5.900e-47 Identity = 117/197 (59.39%), Postives = 138/197 (70.05%), Query Frame = 0
Query: 38 RLHASPYNYPPPPGSGRRRRASKWIDAELMKQKELEKRQGKQQGTATGSGPDLFPSPTGRISSNKEKDKKFLSQARQQLQGEVDTLIERLTGIYKQVKDQSNKITTFGVAEFNPKVATLTDQIGVELESLLGRLKGLKAALRDGEGEAGGEAAGGTGKGTPDFLVTQSFALKALSKDLEGLLFLIEAREREVDILLR 235
R ASPYN P PP G RRR SKWID EL+KQKELEKRQ KQQ F S G +N++K K + QAR QLQ EVDTLI RLTGIY QVKDQSNKI TFGVAEFNPKVA+LT +IG +LESLL +L+ L+ +L++GE +AG GTG L ++ LK+LS DLE LL LIE+RE+EVD+LLR
Sbjct: 112 RQKASPYNTPFPPPPGGRRRGSKWIDPELIKQKELEKRQSKQQRDGA------FTSKQGL--NNRDKSKHMMRQARAQLQVEVDTLIGRLTGIYAQVKDQSNKIVTFGVAEFNPKVASLTAEIGAKLESLLQQLEELRGSLKEGEEDAGVAGGVGTGSRRESDLSLETSTLKSLSNDLESLLQLIESREQEVDVLLR 300
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00060.1 ID=NO10G00060.1|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp CGTTCATACGCGAAGCACGTTTGGAACTCAGTGAGGGACGTCTGTTGTTA CTGATTGAGCGAGCAGGACAACGTACTTAACATATATCAGCACGACCACA TGAGCCTTGAACTGTTTGATATCGTTTAGATTATCTAACGCAAGTGCCTC ACTATGGTGCACCAACGGGTCATTTAATTGCAGGCACTTATAGCCGCTCC CCTGCGTCGAGCTCTTGTTGGTCTTCCCTCACACAATGACGGGCGACAGC ATGATTCTCACGACAGCACCTATGACGTTCCCCCTTCATTCAGACACTCA CCCTCGCCACAAACACGATCCGCGCACACACAATTAAAATCTAGTCGCCT AGCTTGCCCTCCACGTGTGTAACAGCGAGCGTGCAGTCTGGAAACCATGC ATAGCCTCATCATTCAAGCTGCTCTTCTTCTATGCTGCCTTCTGTATTCT GCCGCCTTCCTCTTGCCCTGTTCCTCGTCTTGTTCACTCCTCTCCAGCTC GACGACGAGACTACACGCATCACCGTACAATTATCCCCCTCCCCCGGGGT CTGGCAGGCGTAGAAGGGCTAGTAAATGGATTGATGCCGAGCTGATGAAG CAAAAGGAGTTGGAGAAGCGCCAAGGCAAGCAACAGGGGACTGCCACCGG CTCGGGGCCTGACCTGTTTCCCTCCCCAACAGGCAGAATCAGCAGCAACA AGGAGAAGGACAAAAAATTTCTTAGTCAGGCGCGACAGCAGTTGCAAGGG GAAGTGGACACGTTGATCGAGCGGCTGACTGGCATCTACAAGCAGGTCAA GGACCAAAGCAACAAGATCACAACCTTTGGCGTGGCCGAGTTCAACCCCA AGGTGGCCACGTTAACGGACCAGATTGGAGTCGAGCTTGAAAGCTTGCTA GGGCGCTTGAAGGGCTTGAAGGCAGCACTGAGGGACGGAGAGGGGGAGGC CGGGGGGGAAGCAGCGGGAGGAACAGGGAAAGGGACACCAGATTTTTTGG TGACGCAGAGTTTTGCTTTGAAGGCTTTGAGCAAGGACTTGGAGGGGCTC CTTTTCTTGATCGAGGCCCGAGAACGGGAGGTGGACATCTTATTGCGATC GCTGGGCATGGAAGAGGGAGGAGAGGAGGACTGAGAGAAGCTTTGTGGAG GAGAAGATGGACGGAGAGACAGAAGCAGGGTTTCCAGACCTCATAGCCTT TGTACATAGAGGCAAGTCTATGGGATCCTATGTATGGGTATCTTATATGA CGGGTGGCGGGGGAGAAACATACGGGGAAGAGTGATGGGAGAGAGGGAGG GGCTGGGGTGTAGTGAATGCTTCTTGCTTTTTAGAGGCGGGACATTGGAG CTGCAGTTGCTCTGCAACCTGACTGGGAATGGAGGGAAGGAGTTGAACAA AGGGAGTGATGATCTAGGAGGAGACTTATCATCTCCTGCGCTCGCTGATA ACGTGTGTGGAACAAGCGTAGGGTGAGCGTTGTTTGGATGTACAGTGCAC CACCACGACGGGGTTCCGGCCTGGATTACCTCTGAGAGGAATGTCTTCAA TATGTACATAGGATGGTGGGAGGTGGGCGCATAGGGAGGAAGCGATATAG TTAAGAGGCTTCCATAGATATATTAAGAGCGGATGAGCACAAAAGATGAG TGGAAGGACGAAGAAGGGAAGGGAATAAAACGTAGACGATGAGATGGGT back to topprotein sequence of NO10G00060.1 >NO10G00060.1-protein ID=NO10G00060.1-protein|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp MHSLIIQAALLLCCLLYSAAFLLPCSSSCSLLSSSTTRLHASPYNYPPPP GSGRRRRASKWIDAELMKQKELEKRQGKQQGTATGSGPDLFPSPTGRISS NKEKDKKFLSQARQQLQGEVDTLIERLTGIYKQVKDQSNKITTFGVAEFN PKVATLTDQIGVELESLLGRLKGLKAALRDGEGEAGGEAAGGTGKGTPDF LVTQSFALKALSKDLEGLLFLIEAREREVDILLRSLGMEEGGEED* back to topmRNA from alignment at chr10:18839..20537+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00060.1 ID=NO10G00060.1|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp|location=Sequence derived from alignment at chr10:18839..20537+ (Nannochloropsis oceanica) CGTTCATACGCGAAGCACGTTTGGAACTCAGTGAGGGACGTCTGTTGTTA
CTGATTGAGCGAGCAGGACAACGTACTTAACATATATCAGCACGACCACA
TGAGCCTTGAACTGTTTGATATCGTTTAGATTATCTAACGCAAGTGCCTC
ACTATGGTGCACCAACGGGTCATTTAATTGCAGGCACTTATAGCCGCTCC
CCTGCGTCGAGCTCTTGTTGGTCTTCCCTCACACAATGACGGGCGACAGC
ATGATTCTCACGACAGCACCTATGACGTTCCCCCTTCATTCAGACACTCA
CCCTCGCCACAAACACGATCCGCGCACACACAATTAAAATCTAGTCGCCT
AGCTTGCCCTCCACGTGTGTAACAGCGAGCGTGCAGTCTGGAAACCATGC
ATAGCCTCATCATTCAAGCTGCTCTTCTTCTATGCTGCCTTCTGTATTCT
GCCGCCTTCCTCTTGCCCTGTTCCTCGTCTTGTTCACTCCTCTCCAGCTC
GACGACGAGACTACACGCATCACCGTACAATTATCCCCCTCCCCCGGGGT
CTGGCAGGCGTAGAAGGGCTAGTAAATGGATTGATGCCGAGCTGATGAAG
CAAAAGGAGTTGGAGAAGCGCCAAGGCAAGCAACAGGGGACTGCCACCGG
CTCGGGGCCTGACCTGTTTCCCTCCCCAACAGGCAGAATCAGCAGCAACA
AGGAGAAGGACAAAAAATTTCTTAGTCAGGCGCGACAGCAGTTGCAAGGG
GAAGTGGACACGTTGATCGAGCGGCTGACTGGCATCTACAAGCAGGTCAA
GGACCAAAGCAACAAGATCACAACCTTTGGCGTGGCCGAGTTCAACCCCA
AGGTGGCCACGTTAACGGACCAGATTGGAGTCGAGCTTGAAAGCTTGCTA
GGGCGCTTGAAGGGCTTGAAGGCAGCACTGAGGGACGGAGAGGGGGAGGC
CGGGGGGGAAGCAGCGGGAGGAACAGGGAAAGGGACACCAGATTTTTTGG
TGACGCAGAGTTTTGCTTTGAAGGCTTTGAGCAAGGACTTGGAGGGGCTC
CTTTTCTTGATCGAGGCCCGAGAACGGGAGGTGGACATCTTATTGCGATC
GCTGGGCATGGAAGAGGGAGGAGAGGAGGACTGAGAGAAGCTTTGTGGAG
GAGAAGATGGACGGAGAGACAGAAGCAGGGTTTCCAGACCTCATAGCCTT
TGTACATAGAGGCAAGTCTATGGGATCCTATGTATGGGTATCTTATATGA
CGGGTGGCGGGGGAGAAACATACGGGGAAGAGTGATGGGAGAGAGGGAGG
GGCTGGGGTGTAGTGAATGCTTCTTGCTTTTTAGAGGCGGGACATTGGAG
CTGCAGTTGCTCTGCAACCTGACTGGGAATGGAGGGAAGGAGTTGAACAA
AGGGAGTGATGATCTAGGAGGAGACTTATCATCTCCTGCGCTCGCTGATA
ACGTGTGTGGAACAAGCGTAGGGTGAGCGTTGTTTGGATGTACAGTGCAC
CACCACGACGGGGTTCCGGCCTGGATTACCTCTGAGAGGAATGTCTTCAA
TATGTACATAGGATGGTGGGAGGTGGGCGCATAGGGAGGAAGCGATATAG
TTAAGAGGCTTCCATAGATATATTAAGAGCGGATGAGCACAAAAGATGAG
TGGAAGGACGAAGAAGGGAAGGGAATAAAACGTAGACGATGAGATGGGT back to topCoding sequence (CDS) from alignment at chr10:18839..20537+ >NO10G00060.1 ID=NO10G00060.1|Name=NO10G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr10:18839..20537+ (Nannochloropsis oceanica) ATGCATAGCCTCATCATTCAAGCTGCTCTTCTTCTATGCTGCCTTCTGTA TTCTGCCGCCTTCCTCTTGCCCTGTTCCTCGTCTTGTTCACTCCTCTCCA GCTCGACGACGAGACTACACGCATCACCGTACAATTATCCCCCTCCCCCG GGGTCTGGCAGGCGTAGAAGGGCTAGTAAATGGATTGATGCCGAGCTGAT GAAGCAAAAGGAGTTGGAGAAGCGCCAAGGCAAGCAACAGGGGACTGCCA CCGGCTCGGGGCCTGACCTGTTTCCCTCCCCAACAGGCAGAATCAGCAGC AACAAGGAGAAGGACAAAAAATTTCTTAGTCAGGCGCGACAGCAGTTGCA AGGGGAAGTGGACACGTTGATCGAGCGGCTGACTGGCATCTACAAGCAGG TCAAGGACCAAAGCAACAAGATCACAACCTTTGGCGTGGCCGAGTTCAAC CCCAAGGTGGCCACGTTAACGGACCAGATTGGAGTCGAGCTTGAAAGCTT GCTAGGGCGCTTGAAGGGCTTGAAGGCAGCACTGAGGGACGGAGAGGGGG AGGCCGGGGGGGAAGCAGCGGGAGGAACAGGGAAAGGGACACCAGATTTT TTGGTGACGCAGAGTTTTGCTTTGAAGGCTTTGAGCAAGGACTTGGAGGG GCTCCTTTTCTTGATCGAGGCCCGAGAACGGGAGGTGGACATCTTATTGC GATCGCTGGGCATGGAAGAGGGAGGAGAGGAGGACTGA back to top
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