NO09G03960, NO09G03960 (gene) Nannochloropsis oceanica

Overview
NameNO09G03960
Unique NameNO09G03960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1893
Alignment locationchr9:1160667..1163301 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1160667..1163301 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03960.1NO09G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G03960.2NO09G03960.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607333gene_9682Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03960.1NO09G03960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G03960.2NO09G03960.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03960 ID=NO09G03960|Name=NO09G03960|organism=Nannochloropsis oceanica|type=gene|length=1893bp
ACAGAAGCAATCCCTTCCCCCTATTCTTCGGATTCTTATTAATCAGgtaa
atgtcgtgagtggggtttatcttgcatctctgagagtgacattcctaaga
cagtatcagcatgaattagcatgaattttatacatgtttccctctcttac
tcatctttgttttgctccactctttctaaacacatcctcttcatcctcac
ctccttcttctcttcccctatatcacctccgaaagcaatggcacttatct
ttccatcttcacaaacaattgtcacctacacccttgactctgaaattaac
aacgacttcctcacccgcctgctacccttctctactcattccatctgcct
cctccttcctctagaatgtctagagtaggaatctaggtcactgaaccatt
cacaaccacttcaatcggtactgctcacaatgtacccaaagctatcttct
ggctctcttccatgcatataaatctttgacagctcgctgccccgttttag
atgagccgtatcgtggcccctcgtcttcctcttgtcccacccctccctcc
ctcatctccttcctgctcttctctcctgacctcctcccccaatcccatct
caccactccacccttttttccccttattttgaacagggaaatgaacgacc
atttttcaaaaagaggtcgtggctttttcgcccctcaccctctaccgcat
catgtgctgcccacatatgcattttcaagtaaaagcttgccaatctccca
gatttttacctttcaaagcatcctcccccccccctgatgatacagCAATG
AAGCTGAGTGGCGCCTTCTTCATCACCCTTTTCGCCTCGCTCGTGTTTCA
TGTCGTCGGGGACTGTCCGAGTTTAAGGCCATTTGCTGAGACGAGCGTGG
TGAATGGCCAAGGTGCCTTCTACAAAGTCCGAATCGCCGGGGGCTCAGAG
GCCATCAAAAATGCAACCTTTTCGgtaagaatatttcaagtcacgtggca
gcacgcacggccaagtgactcatacacttttcatgctttcatatgtagAT
CACTCTGCCCGATGGTGTGAGTATTCGTGACTTTGAAGTCTGGCCGAGAC
GTCGAGACCCCTTGCAAAACGGTACCGTATTGACCTGGAGTAATGTGTCC
ATGCGCCCATATATGCGCTCTAGTTTCCACGTGACATTGGGCGTGAATCT
GACTTCCGTAATTGGGTTGAATGGATCGACGGGCTGCACCTCGGGCGAGA
TCTCCTTTCAATCTACTCTGAGCGACGGCGATCACTGCAATGTGGATGCG
CCAGCCATAAGCACGAAGGTGGAAAATGTGACTTCCGGGCAGGGGGATAG
ATGTGGCGGTAGTTCTACTCCCTACACCGCGAAGAACCAGTCCGTGTTCT
CCTGGGGGACGTATAAACCTTTTGACGCAGCGAACCTGCACATCAATGGT
ATCCAGAACTGTCTAGATGCATGCGCTGACGCCTCTGGCTTCTTTGTGGC
CTGGAAGCCTAATCCAGAGGCTGACGACTGCTATTGCCAGTCGAAATCTC
AGTATCTTGTTGACGGTGTTGAAAAGGACACTGCGCTTTCTGGTTACACC
ATCTTTGAGAATCCGGCTGAATTGCATGTGCGACGAAATTAATCTGGTTC
CATCTGTTTTTCGTACTTTCTGCAGTTTATTTTTGATATGTCACCTTGGA
GGAAAGCGGGAGATGGCATAATGGCAGGTCCTATTTTCTTACTATAAAAT
GTATTTTACGCGTCGCTGTACATGTATTCTATGCGTCAAATTTAATACTC
CAAAGTTTTTTGAGCTTTCAGCTGTGCGAGCGATAGACTGTTGCATTGTG
GAAAAATAAAAGCATGAAGTGAACTCCGAGAGAGTCTGTGGAA
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protein sequence of NO09G03960.1

>NO09G03960.1-protein ID=NO09G03960.1-protein|Name=NO09G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MCCPHMHFQVKACQSPRFLPFKASSPPPDDTAMKLSGAFFITLFASLVFH
VVGDCPSLRPFAETSVVNGQGAFYKVRIAGGSEAIKNATFSITLPDGVSI
RDFEVWPRRRDPLQNGTVLTWSNVSMRPYMRSSFHVTLGVNLTSVIGLNG
STGCTSGEISFQSTLSDGDHCNVDAPAISTKVENVTSGQGDRCGGSSTPY
TAKNQSVFSWGTYKPFDAANLHINGIQNCLDACADASGFFVAWKPNPEAD
DCYCQSKSQYLVDGVEKDTALSGYTIFENPAELHVRRN*
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protein sequence of NO09G03960.2

>NO09G03960.2-protein ID=NO09G03960.2-protein|Name=NO09G03960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MKLSGAFFITLFASLVFHVVGDCPSLRPFAETSVVNGQGAFYKVRIAGGS
EAIKNATFSITLPDGVSIRDFEVWPRRRDPLQNGTVLTWSNVSMRPYMRS
SFHVTLGVNLTSVIGLNGSTGCTSGEISFQSTLSDGDHCNVDAPAISTKV
ENVTSGQGDRCGGSSTPYTAKNQSVFSWGTYKPFDAANLHINGIQNCLDA
CADASGFFVAWKPNPEADDCYCQSKSQYLVDGVEKDTALSGYTIFENPAE
LHVRRN*
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Synonyms
Publications