NO09G03950, NO09G03950 (gene) Nannochloropsis oceanica

Overview
NameNO09G03950
Unique NameNO09G03950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1954
Alignment locationchr9:1158627..1160580 +

Link to JBrowse

Properties
Property NameValue
DescriptionElectron transport accessory protein-like domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1158627..1160580 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR008990Elect_transpt_acc-like_dom
IPR004207Fd_thioredoxin_Rdtase_alpha
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO09G03950 vs. NCBI_GenBank
Match: EWM27413.1 (Electron transport accessory protein-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 2.600e-49
Identity = 105/169 (62.13%), Postives = 125/169 (73.96%), Query Frame = 0 
Query:    7 RRGVNVAMLLVMXXXXXXXVASCVEGFLFTPAAAGGVRR----RVGGVALEGAGGRRI-AAATDAAPLTVMHLQLDMGWGADEEGGDFYNPDGIKEGETVEIVVDSIFYSIPKAPKEGVNPKGFKGTVASLKFTAKNGVVCSANRPVVVKFTEPYKFQGHFEFREVKRV 171
            RR V + + +++       +  C +GF+ T  AA G++R    RVGG+  E  G RRI A  + A PL  + LQLD+G GA+EEGGDFYNPDGIKEG+ VEI+ DS FYSIPKAPKEGVNPKG +GTV  LKFTA+NGV CSANRPVVVKFT+PYKF GHFEFREVKRV
Sbjct:   49 RREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLR-EEEGRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPKGLQGTVTMLKFTARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV 216
[Close]
BLAST of NO09G03950 vs. NCBI_GenBank
Match: XP_005853968.1 (hypothetical protein NGA_0456200 [Nannochloropsis gaditana CCMP526] >EKU22393.1 hypothetical protein NGA_0456200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21
Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 0 
Query:    7 RRGVNVAMLLVMXXXXXXXVASCVEGFLFTPAAAGGVRR----RVGGVALEGAGGRRI-AAATDAAPLTVMHLQLDMGWGADEEGGDFYNPDGIKEGETVEIVVDSIFYSIPKAPKEGVNPK 124
            RR V + + +++       +  C +GF+ T  AA G++R    RVGG+  E  G RRI A A+ A PL  +        GA+EEGGDFYNPDGIKEG+ VEI+ DS FYSIPKAPKEGVNPK
Sbjct:    7 RREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLR-EEEGRRRIRAGASSAPPLVRLQXXXXXXXGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPK 127
[Close]
BLAST of NO09G03950 vs. NCBI_GenBank
Match: CBJ26131.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8
Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 0 
Query:   83 DEEGGDFY-NPDGIKEGETVEIVVDSIFYSIPKAPKEGVNPKGFKGTVASLKFTAK--NGVVCSANRPVVVKFTEPYKFQGHFEFREVKR 170
            D++  D+  NPDG+KEG+ + ++   + +   +  K+G +P+G  G ++SL   +K   G   +A+RPVV  FT P KF+ H EF EV++
Sbjct:   80 DDQLDDYQKNPDGLKEGDPITVIAKGLTFYHVRGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRK 169
The following BLAST results are available for this feature:
BLAST of NO09G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM27413.12.600e-4962.13Electron transport accessory protein-like domain p... [more]
XP_005853968.13.000e-2150.82hypothetical protein NGA_0456200 [Nannochloropsis ... [more]
CBJ26131.14.900e-836.67expressed unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006221NSK006221Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03950.1NO09G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280238gene_9683Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100237g2gene3152Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03950.1NO09G03950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03950 ID=NO09G03950|Name=NO09G03950|organism=Nannochloropsis oceanica|type=gene|length=1954bp
ACAGGCATTTGGCAGGCAGGACGACCGACTCAAGCCACCACTCCCTAGCT
AGCTTCCGACCCAGCCGATCCCATTTCCGCTCTCCTCATTTCCCCGTCGT
AGTCGTCACCATCATCATGCCGGTTGCCCCCATAAGGAGAGGGGTCAATG
TGGCCATGCTCCTGGTCATGATCTTGGTGGTTGTCTGCTTGGTTGCGTCC
TGCGTCGAGGGCTTCCTGTTCACGCCCGCGGCAGCAGGAGGGGTGAGAAG
GAGGGTAGGAGGAGTCGCATTGGAAGGGGCAGGAGGAAGGAGAATAGCAG
CAGgtatgtaaagagaaggttgttaactcggaggagaagggataacgatt
agggacttatttgggggaggtatttgtgtgtgtgtggattgacggggaag
agagatttgtattcatcatcctcctactcaacttactctgcctcgtgcct
tcccctctcccacacgcagCCACTGATGCCGCTCCTCTCACGGTCATGCA
TCTGCAACTCGACATGGGATGGGGGGCTGATGAGGAGGGCGGGGACTTCT
ACAACCCGGACGGGATCAAGGAAGgtaggtcaaggatgagggaggggagg
gacgagagggagggtgcgcgatctggaaggagtgatcgcggtggcaatgc
tggacatcacgaaacagtcgacgaccttgcgtctaaaaaaaacaatagat
taaagatgctgtgggagtgtcggggaacttttccgtgattgcccaaacac
caatctcatccctttttctcgtatttcctccctccctctttcagGCGAGA
CAGTGGAGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCC
AAGGAAGGTGTAAATCCCAAAGgtacgtgcctactagctactttgccatc
cctcttctcctcgttctgtgaaaggcgcacacgtgtggccctctgccact
ctcttccctcccttctcccctcccacctcttttccccaaccccaccttga
cctttattcttacaccctcttatcatcgaatccaccttaccttccattcc
cctcccagGCTTCAAGGGGACGGTGGCCTCCTTGAAATTCACGGCCAAGA
ACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTCAAGgtaaggagg
gagggggggagaggggcatggaagaaggctggtggtgtcaaccgggcgga
tggtcaagggagtgtcaaagggggggcgggtgtagatgggaagtgaaagc
gttgagatagaatggaggggacagagaatggaggcatttgtccaggacga
gggaggtggcgacggatgaagaaatgtcggacagaccgcgtcaaaaagac
ttacctttccctcccgaatcttcacctctttttcatcctccctcctttcc
attcgtccagTTCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTA
GGGAGGTCAAACGGGTCTGAGGCTTCGGGAGTTAAGAGGGGGAGAGAACC
AGAGATGGGGATAGGGCAGTCATAGAAAGATAGATTTAAAGAATGGGGCT
GATCAGAATATGTGGAAGGAGATGAGGAAGAGAAGTATGAAGGAGAACCA
AAGTGTGTTTGATAAATTATAACGATTTGAGCGCTTGTGTGCGTGTCCGT
CTATTTATGTATTTGCGGGGCGCACCTCTTTCTGATGTCGTATTCAGGAA
ACTTAACTCTCTTTCCTTGGCTTTTTACGAGGAGAAAACGTACCGTGTTG
ATGAGTGTGGGAGTAGCAAGAGTGCCTGACTGACACTCCTCTTTCAGTTG
AGGTGTGCGGGCGGGCAGGGGACGCGGGCTTTATAAAAGGAGATAAAAGC
AAGCAGATCTAATTTAATTGATAAGAGAATTGATGGGGCGAGTGCGTGAT
TTTGAGGCGTAGCCTAATACACTGATCTTTGCTATCGTTTTGCTGAGCTT
GCCT
back to top

protein sequence of NO09G03950.1

>NO09G03950.1-protein ID=NO09G03950.1-protein|Name=NO09G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MPVAPIRRGVNVAMLLVMILVVVCLVASCVEGFLFTPAAAGGVRRRVGGV
ALEGAGGRRIAAATDAAPLTVMHLQLDMGWGADEEGGDFYNPDGIKEGET
VEIVVDSIFYSIPKAPKEGVNPKGFKGTVASLKFTAKNGVVCSANRPVVV
KFTEPYKFQGHFEFREVKRV*
back to top
Synonyms
Publications