NO09G03950.1, NO09G03950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03950.1
Unique NameNO09G03950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1113
Alignment locationchr9:1158627..1160580 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1158627..1160580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03950.1 vs.
Match: EWM27413.1 (Electron transport accessory protein-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 210.3 bits (534), Expect = 4.700e-51
Identity = 109/169 (64.50%), Postives = 129/169 (76.33%), Query Frame = 0 
Query:    7 RRGVNVAMLLVMILVVVCLVASCVEGFLFTPAAAGGVRR----RVGGVALEGAGGRRIAAATDAAP-LTVMHLQLDMGWGADEEGGDFYNPDGIKEGETVEIVVDSIFYSIPKAPKEGVNPKGFKGTVASLKFTAKNGVVCSANRPVVVKFTEPYKFQGHFEFREVKRV 171
            RR V + + +++  VV CL+  C +GF+ T  AA G++R    RVGG+  E  G RRI A   +AP L  + LQLD+G GA+EEGGDFYNPDGIKEG+ VEI+ DS FYSIPKAPKEGVNPKG +GTV  LKFTA+NGV CSANRPVVVKFT+PYKF GHFEFREVKRV
Sbjct:   49 RREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLR-EEEGRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPKGLQGTVTMLKFTARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV 216
The following BLAST results are available for this feature:
BLAST of NO09G03950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27413.14.700e-5164.50Electron transport accessory protein-like domain p... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03950NO09G03950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03950.1NO09G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03950.1.cds1NO09G03950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03950.1.cds2NO09G03950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03950.1.cds3NO09G03950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03950.1.cds4NO09G03950.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03950.1.cds5NO09G03950.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03950.1 ID=NO09G03950.1|Name=NO09G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
ACAGGCATTTGGCAGGCAGGACGACCGACTCAAGCCACCACTCCCTAGCT
AGCTTCCGACCCAGCCGATCCCATTTCCGCTCTCCTCATTTCCCCGTCGT
AGTCGTCACCATCATCATGCCGGTTGCCCCCATAAGGAGAGGGGTCAATG
TGGCCATGCTCCTGGTCATGATCTTGGTGGTTGTCTGCTTGGTTGCGTCC
TGCGTCGAGGGCTTCCTGTTCACGCCCGCGGCAGCAGGAGGGGTGAGAAG
GAGGGTAGGAGGAGTCGCATTGGAAGGGGCAGGAGGAAGGAGAATAGCAG
CAGCCACTGATGCCGCTCCTCTCACGGTCATGCATCTGCAACTCGACATG
GGATGGGGGGCTGATGAGGAGGGCGGGGACTTCTACAACCCGGACGGGAT
CAAGGAAGGCGAGACAGTGGAGATAGTTGTCGACAGCATTTTCTACTCCA
TTCCCAAGGCACCCAAGGAAGGTGTAAATCCCAAAGGCTTCAAGGGGACG
GTGGCCTCCTTGAAATTCACGGCCAAGAACGGCGTTGTATGCTCCGCCAA
CAGACCTGTTGTTGTCAAGTTCACGGAGCCCTACAAATTTCAGGGCCACT
TCGAATTTAGGGAGGTCAAACGGGTCTGAGGCTTCGGGAGTTAAGAGGGG
GAGAGAACCAGAGATGGGGATAGGGCAGTCATAGAAAGATAGATTTAAAG
AATGGGGCTGATCAGAATATGTGGAAGGAGATGAGGAAGAGAAGTATGAA
GGAGAACCAAAGTGTGTTTGATAAATTATAACGATTTGAGCGCTTGTGTG
CGTGTCCGTCTATTTATGTATTTGCGGGGCGCACCTCTTTCTGATGTCGT
ATTCAGGAAACTTAACTCTCTTTCCTTGGCTTTTTACGAGGAGAAAACGT
ACCGTGTTGATGAGTGTGGGAGTAGCAAGAGTGCCTGACTGACACTCCTC
TTTCAGTTGAGGTGTGCGGGCGGGCAGGGGACGCGGGCTTTATAAAAGGA
GATAAAAGCAAGCAGATCTAATTTAATTGATAAGAGAATTGATGGGGCGA
GTGCGTGATTTTGAGGCGTAGCCTAATACACTGATCTTTGCTATCGTTTT
GCTGAGCTTGCCT
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protein sequence of NO09G03950.1

>NO09G03950.1-protein ID=NO09G03950.1-protein|Name=NO09G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MPVAPIRRGVNVAMLLVMILVVVCLVASCVEGFLFTPAAAGGVRRRVGGV
ALEGAGGRRIAAATDAAPLTVMHLQLDMGWGADEEGGDFYNPDGIKEGET
VEIVVDSIFYSIPKAPKEGVNPKGFKGTVASLKFTAKNGVVCSANRPVVV
KFTEPYKFQGHFEFREVKRV*
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mRNA from alignment at chr9:1158627..1160580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03950.1 ID=NO09G03950.1|Name=NO09G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp|location=Sequence derived from alignment at chr9:1158627..1160580+ (Nannochloropsis oceanica)
ACAGGCATTTGGCAGGCAGGACGACCGACTCAAGCCACCACTCCCTAGCT
AGCTTCCGACCCAGCCGATCCCATTTCCGCTCTCCTCATTTCCCCGTCGT
AGTCGTCACCATCATCATGCCGGTTGCCCCCATAAGGAGAGGGGTCAATG
TGGCCATGCTCCTGGTCATGATCTTGGTGGTTGTCTGCTTGGTTGCGTCC
TGCGTCGAGGGCTTCCTGTTCACGCCCGCGGCAGCAGGAGGGGTGAGAAG
GAGGGTAGGAGGAGTCGCATTGGAAGGGGCAGGAGGAAGGAGAATAGCAG
CAGGTATGTAAAGAGAAGGTTGTTAACTCGGAGGAGAAGGGATAACGATT
AGGGACTTATTTGGGGGAGGTATTTGTGTGTGTGTGGATTGACGGGGAAG
AGAGATTTGTATTCATCATCCTCCTACTCAACTTACTCTGCCTCGTGCCT
TCCCCTCTCCCACACGCAGCCACTGATGCCGCTCCTCTCACGGTCATGCA
TCTGCAACTCGACATGGGATGGGGGGCTGATGAGGAGGGCGGGGACTTCT
ACAACCCGGACGGGATCAAGGAAGGTAGGTCAAGGATGAGGGAGGGGAGG
GACGAGAGGGAGGGTGCGCGATCTGGAAGGAGTGATCGCGGTGGCAATGC
TGGACATCACGAAACAGTCGACGACCTTGCGTCTAAAAAAAACAATAGAT
TAAAGATGCTGTGGGAGTGTCGGGGAACTTTTCCGTGATTGCCCAAACAC
CAATCTCATCCCTTTTTCTCGTATTTCCTCCCTCCCTCTTTCAGGCGAGA
CAGTGGAGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCC
AAGGAAGGTGTAAATCCCAAAGGTACGTGCCTACTAGCTACTTTGCCATC
CCTCTTCTCCTCGTTCTGTGAAAGGCGCACACGTGTGGCCCTCTGCCACT
CTCTTCCCTCCCTTCTCCCCTCCCACCTCTTTTCCCCAACCCCACCTTGA
CCTTTATTCTTACACCCTCTTATCATCGAATCCACCTTACCTTCCATTCC
CCTCCCAGGCTTCAAGGGGACGGTGGCCTCCTTGAAATTCACGGCCAAGA
ACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTCAAGGTAAGGAGG
GAGGGGGGGAGAGGGGCATGGAAGAAGGCTGGTGGTGTCAACCGGGCGGA
TGGTCAAGGGAGTGTCAAAGGGGGGGCGGGTGTAGATGGGAAGTGAAAGC
GTTGAGATAGAATGGAGGGGACAGAGAATGGAGGCATTTGTCCAGGACGA
GGGAGGTGGCGACGGATGAAGAAATGTCGGACAGACCGCGTCAAAAAGAC
TTACCTTTCCCTCCCGAATCTTCACCTCTTTTTCATCCTCCCTCCTTTCC
ATTCGTCCAGTTCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTA
GGGAGGTCAAACGGGTCTGAGGCTTCGGGAGTTAAGAGGGGGAGAGAACC
AGAGATGGGGATAGGGCAGTCATAGAAAGATAGATTTAAAGAATGGGGCT
GATCAGAATATGTGGAAGGAGATGAGGAAGAGAAGTATGAAGGAGAACCA
AAGTGTGTTTGATAAATTATAACGATTTGAGCGCTTGTGTGCGTGTCCGT
CTATTTATGTATTTGCGGGGCGCACCTCTTTCTGATGTCGTATTCAGGAA
ACTTAACTCTCTTTCCTTGGCTTTTTACGAGGAGAAAACGTACCGTGTTG
ATGAGTGTGGGAGTAGCAAGAGTGCCTGACTGACACTCCTCTTTCAGTTG
AGGTGTGCGGGCGGGCAGGGGACGCGGGCTTTATAAAAGGAGATAAAAGC
AAGCAGATCTAATTTAATTGATAAGAGAATTGATGGGGCGAGTGCGTGAT
TTTGAGGCGTAGCCTAATACACTGATCTTTGCTATCGTTTTGCTGAGCTT
GCCT
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Coding sequence (CDS) from alignment at chr9:1158627..1160580+

>NO09G03950.1 ID=NO09G03950.1|Name=NO09G03950.1|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at chr9:1158627..1160580+ (Nannochloropsis oceanica)
ATGCCGGTTGCCCCCATAAGGAGAGGGGTCAATGTGGCCATGCTCCTGGT
CATGATCTTGGTGGTTGTCTGCTTGGTTGCGTCCTGCGTCGAGGGCTTCC
TGTTCACGCCCGCGGCAGCAGGAGGGGTGAGAAGGAGGGTAGGAGGAGTC
GCATTGGAAGGGGCAGGAGGAAGGAGAATAGCAGCAGCCACTGATGCCGC
TCCTCTCACGGTCATGCATCTGCAACTCGACATGGGATGGGGGGCTGATG
AGGAGGGCGGGGACTTCTACAACCCGGACGGGATCAAGGAAGGCGAGACA
GTGGAGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCCAA
GGAAGGTGTAAATCCCAAAGGCTTCAAGGGGACGGTGGCCTCCTTGAAAT
TCACGGCCAAGAACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTC
AAGTTCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTAGGGAGGT
CAAACGGGTCTGA
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Synonyms
Publications