NO09G03580, NO09G03580 (gene) Nannochloropsis oceanica

Overview
NameNO09G03580
Unique NameNO09G03580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1412
Alignment locationchr9:1026841..1028252 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1026841..1028252 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03580.1NO09G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611115gene_10345Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03580.1NO09G03580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03580 ID=NO09G03580|Name=NO09G03580|organism=Nannochloropsis oceanica|type=gene|length=1412bp
ATGGCCGGCAGCCCACCCAGCAACTTGGAAAAATTCCTCTCCCCCGAAGG
GGCCAGCATCGTTTTGGGCTTCCTAGACACACCCTCTTTGATTCGTCTCT
CCACAGTCTCGCATGAATGGTACCATCATGCCCGGGCTCACGTCCAGAGA
ATTGACAGCGACGCTATCCGCCTAGGTCCAATAGGGGTGGCCGATTTCTT
TCCTGCAAAAGAAGCCACAGCATATTCATGCATCTCTGTCTTTTGGAGGG
GCAGCAGCAGCTGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAACAATAACAACAACAATAACAACAACAG
CAGCGGCTGTAGAAACTgtagaaacaatgccgctcaggaagagcaaggat
ccccaacacgaggcaaccagtcttcttcatggaccatctttcgtattcca
ccccatccttcaagctttgctcattcctcacacacagaccaagccacctc
ctctacctggctcaccctcgcggcccccctccgcttcctcatacgccatc
tccccaccaccctcactgtcggttctgcgattgcatcgtgctccctcctc
cgcctcccacggctgtttccctgcttattcagcagcttgcattcttcccc
tccctcgcccacctaatactggagtaccggaactttagggctcaagACGC
TGCGGCTCTGGCTGCCCTTCTGGCGACCATTCCGCCCCCTCCCTTCGCCG
CGCACCTCCAAACCCTCAACATTTCGTGTAATGTCTTCTGTAAAGACGTA
GGGCGTGTCTTGGGGAAATGCTTGCAGCACCTGCCCTCCCTCCATACTCT
CCTCCTGAACGATAACTCCATGGACAACGCGGCGGCGGCTGCCGTGTGTG
CCTCCCTTCGAGGAAAGGCGAATGTGGAGCTCCGTCGCCTTTCTCTGGCT
TGGAACTGGGTTGGAGTGATGGGGAGTAGGGAGGTAGGGGGGTTGCTTGG
CTCGGGGGCGGTGGCACAGTTGGAGTGGCTGGATGTGAAAGGGAACGGGA
TAACGAGTGTGGGGTTGTGTTTGTTCGTGGAGGCCATGCAGCAGGAGGTA
GAGAAGAGGGAAAGGAGGAGGAAGAGGGAGGAGACAAAGGAGGGGTATAG
GATGAGGAGTGGTGGTGGGAGTCGGGTAAGGGAGAGTGAAGAGGTGGAGG
AGAATGAGGAGGGTGAGGTCGATCATCTTCATCCGCTTCAGCTTTCGGCC
CACCAGCGGCATTACCTCCATTTCCACCCCCCTTCAACTGGCAGCGACGA
GCAGCCTACCCCTTTCTGCTTTCCTAACTCCCCTTGCCCCTCTTTGTGCG
AGATGGATTTTTCGTATAATTACGTGGGAGGTGGAGGAGTGCGGGCGTTG
GCAAACGCGTGA
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protein sequence of NO09G03580.1

>NO09G03580.1-protein ID=NO09G03580.1-protein|Name=NO09G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MAGSPPSNLEKFLSPEGASIVLGFLDTPSLIRLSTVSHEWYHHARAHVQR
IDSDAIRLGPIGVADFFPAKEATAYSCISVFWRGSSSCSSSSSSSSSSSS
SSSSSSNNNNNNNNNNSSGCRNYAAALAALLATIPPPPFAAHLQTLNISC
NVFCKDVGRVLGKCLQHLPSLHTLLLNDNSMDNAAAAAVCASLRGKANVE
LRRLSLAWNWVGVMGSREVGGLLGSGAVAQLEWLDVKGNGITSVGLCLFV
EAMQQEVEKRERRRKREETKEGYRMRSGGGSRVRESEEVEENEEGEVDHL
HPLQLSAHQRHYLHFHPPSTGSDEQPTPFCFPNSPCPSLCEMDFSYNYVG
GGGVRALANA*
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Synonyms
Publications