NO09G03580.1, NO09G03580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03580.1
Unique NameNO09G03580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr9:1026841..1028252 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1026841..1028252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03580NO09G03580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03580.1NO09G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03580.1.cds1NO09G03580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03580.1.cds2NO09G03580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03580.1 ID=NO09G03580.1|Name=NO09G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATGGCCGGCAGCCCACCCAGCAACTTGGAAAAATTCCTCTCCCCCGAAGG
GGCCAGCATCGTTTTGGGCTTCCTAGACACACCCTCTTTGATTCGTCTCT
CCACAGTCTCGCATGAATGGTACCATCATGCCCGGGCTCACGTCCAGAGA
ATTGACAGCGACGCTATCCGCCTAGGTCCAATAGGGGTGGCCGATTTCTT
TCCTGCAAAAGAAGCCACAGCATATTCATGCATCTCTGTCTTTTGGAGGG
GCAGCAGCAGCTGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAACAATAACAACAACAATAACAACAACAG
CAGCGGCTGTAGAAACTACGCTGCGGCTCTGGCTGCCCTTCTGGCGACCA
TTCCGCCCCCTCCCTTCGCCGCGCACCTCCAAACCCTCAACATTTCGTGT
AATGTCTTCTGTAAAGACGTAGGGCGTGTCTTGGGGAAATGCTTGCAGCA
CCTGCCCTCCCTCCATACTCTCCTCCTGAACGATAACTCCATGGACAACG
CGGCGGCGGCTGCCGTGTGTGCCTCCCTTCGAGGAAAGGCGAATGTGGAG
CTCCGTCGCCTTTCTCTGGCTTGGAACTGGGTTGGAGTGATGGGGAGTAG
GGAGGTAGGGGGGTTGCTTGGCTCGGGGGCGGTGGCACAGTTGGAGTGGC
TGGATGTGAAAGGGAACGGGATAACGAGTGTGGGGTTGTGTTTGTTCGTG
GAGGCCATGCAGCAGGAGGTAGAGAAGAGGGAAAGGAGGAGGAAGAGGGA
GGAGACAAAGGAGGGGTATAGGATGAGGAGTGGTGGTGGGAGTCGGGTAA
GGGAGAGTGAAGAGGTGGAGGAGAATGAGGAGGGTGAGGTCGATCATCTT
CATCCGCTTCAGCTTTCGGCCCACCAGCGGCATTACCTCCATTTCCACCC
CCCTTCAACTGGCAGCGACGAGCAGCCTACCCCTTTCTGCTTTCCTAACT
CCCCTTGCCCCTCTTTGTGCGAGATGGATTTTTCGTATAATTACGTGGGA
GGTGGAGGAGTGCGGGCGTTGGCAAACGCGTGA
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protein sequence of NO09G03580.1

>NO09G03580.1-protein ID=NO09G03580.1-protein|Name=NO09G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MAGSPPSNLEKFLSPEGASIVLGFLDTPSLIRLSTVSHEWYHHARAHVQR
IDSDAIRLGPIGVADFFPAKEATAYSCISVFWRGSSSCSSSSSSSSSSSS
SSSSSSNNNNNNNNNNSSGCRNYAAALAALLATIPPPPFAAHLQTLNISC
NVFCKDVGRVLGKCLQHLPSLHTLLLNDNSMDNAAAAAVCASLRGKANVE
LRRLSLAWNWVGVMGSREVGGLLGSGAVAQLEWLDVKGNGITSVGLCLFV
EAMQQEVEKRERRRKREETKEGYRMRSGGGSRVRESEEVEENEEGEVDHL
HPLQLSAHQRHYLHFHPPSTGSDEQPTPFCFPNSPCPSLCEMDFSYNYVG
GGGVRALANA*
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mRNA from alignment at chr9:1026841..1028252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03580.1 ID=NO09G03580.1|Name=NO09G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp|location=Sequence derived from alignment at chr9:1026841..1028252+ (Nannochloropsis oceanica)
ATGGCCGGCAGCCCACCCAGCAACTTGGAAAAATTCCTCTCCCCCGAAGG
GGCCAGCATCGTTTTGGGCTTCCTAGACACACCCTCTTTGATTCGTCTCT
CCACAGTCTCGCATGAATGGTACCATCATGCCCGGGCTCACGTCCAGAGA
ATTGACAGCGACGCTATCCGCCTAGGTCCAATAGGGGTGGCCGATTTCTT
TCCTGCAAAAGAAGCCACAGCATATTCATGCATCTCTGTCTTTTGGAGGG
GCAGCAGCAGCTGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAACAATAACAACAACAATAACAACAACAG
CAGCGGCTGTAGAAACTGTAGAAACAATGCCGCTCAGGAAGAGCAAGGAT
CCCCAACACGAGGCAACCAGTCTTCTTCATGGACCATCTTTCGTATTCCA
CCCCATCCTTCAAGCTTTGCTCATTCCTCACACACAGACCAAGCCACCTC
CTCTACCTGGCTCACCCTCGCGGCCCCCCTCCGCTTCCTCATACGCCATC
TCCCCACCACCCTCACTGTCGGTTCTGCGATTGCATCGTGCTCCCTCCTC
CGCCTCCCACGGCTGTTTCCCTGCTTATTCAGCAGCTTGCATTCTTCCCC
TCCCTCGCCCACCTAATACTGGAGTACCGGAACTTTAGGGCTCAAGACGC
TGCGGCTCTGGCTGCCCTTCTGGCGACCATTCCGCCCCCTCCCTTCGCCG
CGCACCTCCAAACCCTCAACATTTCGTGTAATGTCTTCTGTAAAGACGTA
GGGCGTGTCTTGGGGAAATGCTTGCAGCACCTGCCCTCCCTCCATACTCT
CCTCCTGAACGATAACTCCATGGACAACGCGGCGGCGGCTGCCGTGTGTG
CCTCCCTTCGAGGAAAGGCGAATGTGGAGCTCCGTCGCCTTTCTCTGGCT
TGGAACTGGGTTGGAGTGATGGGGAGTAGGGAGGTAGGGGGGTTGCTTGG
CTCGGGGGCGGTGGCACAGTTGGAGTGGCTGGATGTGAAAGGGAACGGGA
TAACGAGTGTGGGGTTGTGTTTGTTCGTGGAGGCCATGCAGCAGGAGGTA
GAGAAGAGGGAAAGGAGGAGGAAGAGGGAGGAGACAAAGGAGGGGTATAG
GATGAGGAGTGGTGGTGGGAGTCGGGTAAGGGAGAGTGAAGAGGTGGAGG
AGAATGAGGAGGGTGAGGTCGATCATCTTCATCCGCTTCAGCTTTCGGCC
CACCAGCGGCATTACCTCCATTTCCACCCCCCTTCAACTGGCAGCGACGA
GCAGCCTACCCCTTTCTGCTTTCCTAACTCCCCTTGCCCCTCTTTGTGCG
AGATGGATTTTTCGTATAATTACGTGGGAGGTGGAGGAGTGCGGGCGTTG
GCAAACGCGTGA
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Coding sequence (CDS) from alignment at chr9:1026841..1028252+

>NO09G03580.1 ID=NO09G03580.1|Name=NO09G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr9:1026841..1028252+ (Nannochloropsis oceanica)
ATGGCCGGCAGCCCACCCAGCAACTTGGAAAAATTCCTCTCCCCCGAAGG
GGCCAGCATCGTTTTGGGCTTCCTAGACACACCCTCTTTGATTCGTCTCT
CCACAGTCTCGCATGAATGGTACCATCATGCCCGGGCTCACGTCCAGAGA
ATTGACAGCGACGCTATCCGCCTAGGTCCAATAGGGGTGGCCGATTTCTT
TCCTGCAAAAGAAGCCACAGCATATTCATGCATCTCTGTCTTTTGGAGGG
GCAGCAGCAGCTGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAACAATAACAACAACAATAACAACAACAG
CAGCGGCTGTAGAAACTACGCTGCGGCTCTGGCTGCCCTTCTGGCGACCA
TTCCGCCCCCTCCCTTCGCCGCGCACCTCCAAACCCTCAACATTTCGTGT
AATGTCTTCTGTAAAGACGTAGGGCGTGTCTTGGGGAAATGCTTGCAGCA
CCTGCCCTCCCTCCATACTCTCCTCCTGAACGATAACTCCATGGACAACG
CGGCGGCGGCTGCCGTGTGTGCCTCCCTTCGAGGAAAGGCGAATGTGGAG
CTCCGTCGCCTTTCTCTGGCTTGGAACTGGGTTGGAGTGATGGGGAGTAG
GGAGGTAGGGGGGTTGCTTGGCTCGGGGGCGGTGGCACAGTTGGAGTGGC
TGGATGTGAAAGGGAACGGGATAACGAGTGTGGGGTTGTGTTTGTTCGTG
GAGGCCATGCAGCAGGAGGTAGAGAAGAGGGAAAGGAGGAGGAAGAGGGA
GGAGACAAAGGAGGGGTATAGGATGAGGAGTGGTGGTGGGAGTCGGGTAA
GGGAGAGTGAAGAGGTGGAGGAGAATGAGGAGGGTGAGGTCGATCATCTT
CATCCGCTTCAGCTTTCGGCCCACCAGCGGCATTACCTCCATTTCCACCC
CCCTTCAACTGGCAGCGACGAGCAGCCTACCCCTTTCTGCTTTCCTAACT
CCCCTTGCCCCTCTTTGTGCGAGATGGATTTTTCGTATAATTACGTGGGA
GGTGGAGGAGTGCGGGCGTTGGCAAACGCGTGA
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Synonyms
Publications