NO09G03470, NO09G03470 (gene) Nannochloropsis oceanica

Overview
NameNO09G03470
Unique NameNO09G03470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length799
Alignment locationchr9:995703..996501 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:995703..996501 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO09G03470 vs. NCBI_GenBank
Match: EWM27448.1 (hypothetical protein Naga_100107g3 [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 2.000e-37
Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 0 
Query:    2 AQTRFGLPNWFTSSLLLWMTLRQFQKPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANREIFSPFVRQQCRPQVVTLLNILTLQLQAEEFLYIKLEGRTSRLWVSRSGLPALPTDVLLAIARFVRVIFEGDIEVGRLALKAEKTTMEVVAERGREGRSEG 195
            +QTR G+PNWFTS+LLLWMTL++FQ+            XXXXXXXXXXXXXXXXXXXXX                               N  IF PFV+QQCRPQVVT L+I+ LQLQAEEFLY+KLE RT RLW+SRSGLPALP + LLAI RFV+ IFEGD+E+GRLA KAE T +E+VAERG E + EG
Sbjct:  142 SQTRCGIPNWFTSALLLWMTLQEFQE-----QASASRGXXXXXXXXXXXXXXXXXXXXXVEGGRNPGEGPAGHVGGKEEERNSGKGAGKTNWTIFCPFVKQQCRPQVVTFLHIIRLQLQAEEFLYMKLEKRTPRLWISRSGLPALPVECLLAIVRFVKQIFEGDMEIGRLAQKAEGTVLEIVAERGEERKKEG 329
The following BLAST results are available for this feature:
BLAST of NO09G03470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27448.12.000e-3759.07hypothetical protein Naga_100107g3 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010894NSK010894Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03470.1NO09G03470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|348648gene_10334Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100107g3gene3102Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03470.1NO09G03470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03470 ID=NO09G03470|Name=NO09G03470|organism=Nannochloropsis oceanica|type=gene|length=799bp
ATGGCACAAACTCGATTCGGCCTCCCCAATTGGTTTACATCCTCCCTACT
CCTGTGGATGACCTTGAGGCAATTCCAGAAGCCACAACCACCAAATCCAG
CAGCAGCGGCAGCGGCAGCAGCGGCAGAAGCGGTAGCAGCAGGAGAAAGA
GGAGGCGGAGGATGGTCCGCACCGGCGGCTGCGGCGGAAGAGCCGGCAGG
GAATGGCGAAAGAAAAGGAGAAAAAGACATAGGAGGAAGAGAAAAAAAGG
AGGAGGGAGGAGGAAGCAAGGCTAACAGGGAGATTTTTTCTCCCTTCGTC
AGACAGCAGTGCCGGCCACAAGTTGTCACCCTCTTGAACATTCTTACTTT
GCAGTTGCAAGCGGAGgtaagcccagtcattccctccctccctccctccc
tccctcccttccccccctccctccctccctcccttccttcgtcccttcct
ctctcccttcttccctttcctctgttcacccttctcattcctctattggc
cgtcggagtggctgctgttcctcatcccccccccctccctccctccctcc
ctcattcgcccccagGAGTTCCTTTACATCAAACTCGAAGGACGCACCTC
CCGTCTGTGGGTGAGCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTCT
TGCTGGCCATTGCACGATTCGTACGGGTCATCTTCGAAGGAGACATTGAA
GTTGGCCGGCTGGCACTCAAGGCGGAGAAGACGACGATGGAGGTGGTGGC
GGAGCGGGGGAGGGAGGGGAGATCGGAGGGAGGAGGGGGCCCTGCTTAA
back to top

protein sequence of NO09G03470.1

>NO09G03470.1-protein ID=NO09G03470.1-protein|Name=NO09G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAQTRFGLPNWFTSSLLLWMTLRQFQKPQPPNPAAAAAAAAAEAVAAGER
GGGGWSAPAAAAEEPAGNGERKGEKDIGGREKKEEGGGSKANREIFSPFV
RQQCRPQVVTLLNILTLQLQAEEFLYIKLEGRTSRLWVSRSGLPALPTDV
LLAIARFVRVIFEGDIEVGRLALKAEKTTMEVVAERGREGRSEGGGGPA*
back to top
Synonyms
Publications