NO09G03470.1, NO09G03470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03470.1
Unique NameNO09G03470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length600
Alignment locationchr9:995703..996501 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:995703..996501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03470.1 vs.
Match: EWM27448.1 (hypothetical protein Naga_100107g3 [Nannochloropsis gaditana])

HSP 1 Score: 184.9 bits (468), Expect = 2.500e-43
Identity = 111/209 (53.11%), Postives = 135/209 (64.59%), Query Frame = 0
Query:    2 AQTRFGLPNWFTSSLLLWMTLRQFQ--------------KPQPPNPAAAAAAAAAEAVAAGERGGGGWSAPAAAAEEPAGNGERKGEKDIGGREKKEEGG--GSKANREIFSPFVRQQCRPQVVTLLNILTLQLQAEEFLYIKLEGRTSRLWVSRSGLPALPTDVLLAIARFVRVIFEGDIEVGRLALKAEKTTMEVVAERGREGRSEG 195
            +QTR G+PNWFTS+LLLWMTL++FQ              KP PP P  + +    E    G R  G         E PAG+        +GG+E++   G    K N  IF PFV+QQCRPQVVT L+I+ LQLQAEEFLY+KLE RT RLW+SRSGLPALP + LLAI RFV+ IFEGD+E+GRLA KAE T +E+VAERG E + EG
Sbjct:  142 SQTRCGIPNWFTSALLLWMTLQEFQEQASASRGAEAPNKKPDPPPPMQSESDPDVE----GGRNPG---------EGPAGH--------VGGKEEERNSGKGAGKTNWTIFCPFVKQQCRPQVVTFLHIIRLQLQAEEFLYMKLEKRTPRLWISRSGLPALPVECLLAIVRFVKQIFEGDMEIGRLAQKAEGTVLEIVAERGEERKKEG 329          
The following BLAST results are available for this feature:
BLAST of NO09G03470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27448.12.500e-4353.11hypothetical protein Naga_100107g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03470NO09G03470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03470.1NO09G03470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03470.1.cds1NO09G03470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03470.1.cds2NO09G03470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03470.1 ID=NO09G03470.1|Name=NO09G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
ATGGCACAAACTCGATTCGGCCTCCCCAATTGGTTTACATCCTCCCTACT
CCTGTGGATGACCTTGAGGCAATTCCAGAAGCCACAACCACCAAATCCAG
CAGCAGCGGCAGCGGCAGCAGCGGCAGAAGCGGTAGCAGCAGGAGAAAGA
GGAGGCGGAGGATGGTCCGCACCGGCGGCTGCGGCGGAAGAGCCGGCAGG
GAATGGCGAAAGAAAAGGAGAAAAAGACATAGGAGGAAGAGAAAAAAAGG
AGGAGGGAGGAGGAAGCAAGGCTAACAGGGAGATTTTTTCTCCCTTCGTC
AGACAGCAGTGCCGGCCACAAGTTGTCACCCTCTTGAACATTCTTACTTT
GCAGTTGCAAGCGGAGGAGTTCCTTTACATCAAACTCGAAGGACGCACCT
CCCGTCTGTGGGTGAGCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTC
TTGCTGGCCATTGCACGATTCGTACGGGTCATCTTCGAAGGAGACATTGA
AGTTGGCCGGCTGGCACTCAAGGCGGAGAAGACGACGATGGAGGTGGTGG
CGGAGCGGGGGAGGGAGGGGAGATCGGAGGGAGGAGGGGGCCCTGCTTAA
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protein sequence of NO09G03470.1

>NO09G03470.1-protein ID=NO09G03470.1-protein|Name=NO09G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAQTRFGLPNWFTSSLLLWMTLRQFQKPQPPNPAAAAAAAAAEAVAAGER
GGGGWSAPAAAAEEPAGNGERKGEKDIGGREKKEEGGGSKANREIFSPFV
RQQCRPQVVTLLNILTLQLQAEEFLYIKLEGRTSRLWVSRSGLPALPTDV
LLAIARFVRVIFEGDIEVGRLALKAEKTTMEVVAERGREGRSEGGGGPA*
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mRNA from alignment at chr9:995703..996501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03470.1 ID=NO09G03470.1|Name=NO09G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=799bp|location=Sequence derived from alignment at chr9:995703..996501- (Nannochloropsis oceanica)
ATGGCACAAACTCGATTCGGCCTCCCCAATTGGTTTACATCCTCCCTACT CCTGTGGATGACCTTGAGGCAATTCCAGAAGCCACAACCACCAAATCCAG CAGCAGCGGCAGCGGCAGCAGCGGCAGAAGCGGTAGCAGCAGGAGAAAGA GGAGGCGGAGGATGGTCCGCACCGGCGGCTGCGGCGGAAGAGCCGGCAGG GAATGGCGAAAGAAAAGGAGAAAAAGACATAGGAGGAAGAGAAAAAAAGG AGGAGGGAGGAGGAAGCAAGGCTAACAGGGAGATTTTTTCTCCCTTCGTC AGACAGCAGTGCCGGCCACAAGTTGTCACCCTCTTGAACATTCTTACTTT GCAGTTGCAAGCGGAGGTAAGCCCAGTCATTCCCTCCCTCCCTCCCTCCC TCCCTCCCTTCCCCCCCTCCCTCCCTCCCTCCCTTCCTTCGTCCCTTCCT CTCTCCCTTCTTCCCTTTCCTCTGTTCACCCTTCTCATTCCTCTATTGGC CGTCGGAGTGGCTGCTGTTCCTCATCCCCCCCCCCTCCCTCCCTCCCTCC CTCATTCGCCCCCAGGAGTTCCTTTACATCAAACTCGAAGGACGCACCTC CCGTCTGTGGGTGAGCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTCT TGCTGGCCATTGCACGATTCGTACGGGTCATCTTCGAAGGAGACATTGAA GTTGGCCGGCTGGCACTCAAGGCGGAGAAGACGACGATGGAGGTGGTGGC GGAGCGGGGGAGGGAGGGGAGATCGGAGGGAGGAGGGGGCCCTGCTTAA
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Coding sequence (CDS) from alignment at chr9:995703..996501-

>NO09G03470.1 ID=NO09G03470.1|Name=NO09G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr9:995703..996501- (Nannochloropsis oceanica)
ATGGCACAAACTCGATTCGGCCTCCCCAATTGGTTTACATCCTCCCTACT
CCTGTGGATGACCTTGAGGCAATTCCAGAAGCCACAACCACCAAATCCAG
CAGCAGCGGCAGCGGCAGCAGCGGCAGAAGCGGTAGCAGCAGGAGAAAGA
GGAGGCGGAGGATGGTCCGCACCGGCGGCTGCGGCGGAAGAGCCGGCAGG
GAATGGCGAAAGAAAAGGAGAAAAAGACATAGGAGGAAGAGAAAAAAAGG
AGGAGGGAGGAGGAAGCAAGGCTAACAGGGAGATTTTTTCTCCCTTCGTC
AGACAGCAGTGCCGGCCACAAGTTGTCACCCTCTTGAACATTCTTACTTT
GCAGTTGCAAGCGGAGGAGTTCCTTTACATCAAACTCGAAGGACGCACCT
CCCGTCTGTGGGTGAGCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTC
TTGCTGGCCATTGCACGATTCGTACGGGTCATCTTCGAAGGAGACATTGA
AGTTGGCCGGCTGGCACTCAAGGCGGAGAAGACGACGATGGAGGTGGTGG
CGGAGCGGGGGAGGGAGGGGAGATCGGAGGGAGGAGGGGGCCCTGCTTAA
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Synonyms
Publications