NO09G03400, NO09G03400 (gene) Nannochloropsis oceanica

Overview
NameNO09G03400
Unique NameNO09G03400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1129
Alignment locationchr9:978609..979737 -

Link to JBrowse

Properties
Property NameValue
DescriptionDual specificity protein phosphatase 12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:978609..979737 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024950DUSP
Homology
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: EWM27465.1 (dual specificity protein phosphatase 12 [Nannochloropsis gaditana])

HSP 1 Score: 218.0 bits (554), Expect = 2.400e-53
Identity = 105/149 (70.47%), Postives = 121/149 (81.21%), Query Frame = 0 
Query:   15 FTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDD------AAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREETEGLAVVDFGAKLRE 158
            FTCR+CR  LF+DKDLEPHA GAQRINRRK+G     SAA+  ACTSYFLNE A+ESL WVR+AL+AHD+      A +  +E IEGKL CPNA+C  RLG+FNWSG+QCSCGSWVVPAVQVV SKVDRKG EETEGL VVDFGA++R+
Sbjct:   17 FTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVVDFGAQVRK 165
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BLAST of NO09G03400 vs. NCBI_GenBank
Match: XP_005854460.1 (dual specificity protein, partial [Nannochloropsis gaditana CCMP526] >EKU21900.1 dual specificity protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 106.7 bits (265), Expect = 7.900e-20
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0 
Query:   93 IEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREETEGLAVV 150
            IEGKL CPNA+C  RLG+FNWSG+QCSCGSWVVPAVQVV SKVDRKG EETEGL VV
Sbjct:    1 IEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVV 57
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BLAST of NO09G03400 vs. NCBI_GenBank
Match: OWZ01068.1 (hypothetical protein PHMEG_00027616 [Phytophthora megakarya])

HSP 1 Score: 100.5 bits (249), Expect = 5.700e-18
Identity = 58/130 (44.62%), Postives = 73/130 (56.15%), Query Frame = 0 
Query:    8 PHASAISFTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS   F C+ CR  LFT + L PH     +I+ RRKL     S+ AN  AC+S FL     E+L W+  AL A            EGK+ CP AKC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   20 PKASVTKFACKKCRCVLFTSEQLAPHEPEQHQISTRRKLKDLRHSAGAN-VACSSLFLE----ETLPWMDEALLA------------EGKVHCPTAKCHSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 132
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETI57382.1 (hypothetical protein F443_00300 [Phytophthora parasitica P1569])

HSP 1 Score: 100.1 bits (248), Expect = 7.400e-18
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0 
Query:    8 PHASAIS-FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS+++ F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   23 PDASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETK97160.1 (hypothetical protein L915_00260 [Phytophthora parasitica])

HSP 1 Score: 100.1 bits (248), Expect = 7.400e-18
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0 
Query:    8 PHASAIS-FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS+++ F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   23 PDASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETL24298.1 (hypothetical protein L916_21688 [Phytophthora parasitica])

HSP 1 Score: 100.1 bits (248), Expect = 7.400e-18
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0 
Query:    8 PHASAIS-FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS+++ F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   23 PDASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETM03552.1 (hypothetical protein L917_00244 [Phytophthora parasitica])

HSP 1 Score: 100.1 bits (248), Expect = 7.400e-18
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0 
Query:    8 PHASAIS-FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS+++ F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   23 PDASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETM56824.1 (hypothetical protein L914_00266, partial [Phytophthora parasitica])

HSP 1 Score: 100.1 bits (248), Expect = 7.400e-18
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0 
Query:    8 PHASAIS-FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS+++ F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   15 PDASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 128
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETO86127.1 (hypothetical protein F444_00282 [Phytophthora parasitica P1976])

HSP 1 Score: 100.1 bits (248), Expect = 7.400e-18
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0 
Query:    8 PHASAIS-FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS+++ F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   23 PDASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136
[Close]
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETP27163.1 (hypothetical protein F441_00278 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 100.1 bits (248), Expect = 7.400e-18
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0 
Query:    8 PHASAIS-FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P AS+++ F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   23 PDASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136
The following BLAST results are available for this feature:
BLAST of NO09G03400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27465.12.400e-5370.47dual specificity protein phosphatase 12 [Nannochlo... [more]
XP_005854460.17.900e-2084.21dual specificity protein, partial [Nannochloropsis... [more]
OWZ01068.15.700e-1844.62hypothetical protein PHMEG_00027616 [Phytophthora ... [more]
ETI57382.17.400e-1845.04hypothetical protein F443_00300 [Phytophthora para... [more]
ETK97160.17.400e-1845.04hypothetical protein L915_00260 [Phytophthora para... [more]
ETL24298.17.400e-1845.04hypothetical protein L916_21688 [Phytophthora para... [more]
ETM03552.17.400e-1845.04hypothetical protein L917_00244 [Phytophthora para... [more]
ETM56824.17.400e-1845.04hypothetical protein L914_00266, partial [Phytopht... [more]
ETO86127.17.400e-1845.04hypothetical protein F444_00282 [Phytophthora para... [more]
ETP27163.17.400e-1845.04hypothetical protein F441_00278 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010882NSK010882Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03400.1NO09G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588345gene_4204Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100257g9gene3096Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03400.1NO09G03400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03400 ID=NO09G03400|Name=NO09G03400|organism=Nannochloropsis oceanica|type=gene|length=1129bp
ACAAAGCAATTCAGGGCACCCACAGCCGCCTACTATCCTACTTTACTTTA
CCAGCATCGCATCTAGACGACCATCTTTCGCTTTGAGTCCAAGATGCTTC
TTTTCTCTCTGTTTTCCCGGCTGTTTCCACTCATCCCAAACCTCCCCATC
CCCCACTCCCACATCCCACAGCCAACAAAAAATGACAGACCCTAGCACCA
CGCCGCACGCATCAGCCATCAGCTTCACCTGTCGAATCTGCCGCCGAGAG
CTTTTCACGGACAAGGACTTGGAGCCGCATGCCGCCGGGGCTCAACGCAT
CAACCGCCGCAAGgtatatatgtctcttctcatctcctcacccgcctgtc
cgcactccttctctccacatatctgacactaaatatctctgactacagCT
CGGCAGCGGTACTCTTTCGAGCGCGGCGAACGCTACGGCATGCACGTCCT
ATTTCCTCAATGAAGTGGCCTTGGAGAGCTTGAGCTGGGTACGCTCGGCA
CTCAAGGCCCATGACGATGCAGCAGAAGCTGGAGCGGAGGGAATAGAAGG
GAAATTAACATGTCCAAATGCCAAGTGTGGTGGTCGTCTAGGAAATTTTA
ATTGGAGCGGTTCGCAGTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTGTT
CAGGTGGTGGCGAGCAAGGTTGATCGGAAGGGGAGGGAGGAGACGGAAGG
GCTGGCGGTGGTGGACTTTGGAGCGAAGCTACGGGAGAGGGAAGGACAAC
AAAGACGGCAGCAGCAGCGAGAAGGAAATGAGGAGGGTTGTAAAGAAGCA
CTAAACGCAGAGGAAGGGTGACTGAAGGGAGAGACGGGAGAGGATGTAGT
CGTCACACGGACAGTTTGGGAAGGAGTTGTCGTTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGACGTTGGTGGCGGCGGTGGTGTTGGTGCTGATAGC
AGAGCTGTTTGTCGTACTGCTGCTGCTTCTGCTGCGGGGTCGGCAGCGGT
CGCTGCTCATGGTGGCAGTGAATGAATCGAACGTAAGAGAAGGAGGGAAG
GGAAGATACGACCAGGTGTAAAAAGAGATGACTTGTTAAAAAAAAAGGGC
GGATGGCCTGGCCAAAGGCTTTCAAAGCG
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protein sequence of NO09G03400.1

>NO09G03400.1-protein ID=NO09G03400.1-protein|Name=NO09G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MTDPSTTPHASAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTL
SSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCP
NAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREETEGLAVVD
FGAKLREREGQQRRQQQREGNEEGCKEALNAEEG*
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Synonyms
Publications