NO09G03400.1, NO09G03400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03400.1
Unique NameNO09G03400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1044
Alignment locationchr9:978609..979737 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:978609..979737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03400.1 vs.
Match: EWM27465.1 (dual specificity protein phosphatase 12 [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 1.900e-53
Identity = 111/175 (63.43%), Postives = 132/175 (75.43%), Query Frame = 0 
Query:   15 FTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDA------AEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREETEGLAVVDFGAKLR-------EREGQQRRQQQREGNEEGCK 177
            FTCR+CR  LF+DKDLEPHA GAQRINRRK+G     SAA+  ACTSYFLNE A+ESL WVR+AL+AHD+A       +  +E IEGKL CPNA+C  RLG+FNWSG+QCSCGSWVVPAVQVV SKVDRKG EETEGL VVDFGA++R       ++E    + + REG+EE  +
Sbjct:   17 FTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVVDFGAQVRKNLEVPQQQENCAEKDKTREGSEEATR 191
The following BLAST results are available for this feature:
BLAST of NO09G03400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27465.11.900e-5363.43dual specificity protein phosphatase 12 [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03400NO09G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03400.1NO09G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03400.1.cds1NO09G03400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03400.1.cds2NO09G03400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03400.1 ID=NO09G03400.1|Name=NO09G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp
ACAAAGCAATTCAGGGCACCCACAGCCGCCTACTATCCTACTTTACTTTA
CCAGCATCGCATCTAGACGACCATCTTTCGCTTTGAGTCCAAGATGCTTC
TTTTCTCTCTGTTTTCCCGGCTGTTTCCACTCATCCCAAACCTCCCCATC
CCCCACTCCCACATCCCACAGCCAACAAAAAATGACAGACCCTAGCACCA
CGCCGCACGCATCAGCCATCAGCTTCACCTGTCGAATCTGCCGCCGAGAG
CTTTTCACGGACAAGGACTTGGAGCCGCATGCCGCCGGGGCTCAACGCAT
CAACCGCCGCAAGCTCGGCAGCGGTACTCTTTCGAGCGCGGCGAACGCTA
CGGCATGCACGTCCTATTTCCTCAATGAAGTGGCCTTGGAGAGCTTGAGC
TGGGTACGCTCGGCACTCAAGGCCCATGACGATGCAGCAGAAGCTGGAGC
GGAGGGAATAGAAGGGAAATTAACATGTCCAAATGCCAAGTGTGGTGGTC
GTCTAGGAAATTTTAATTGGAGCGGTTCGCAGTGCTCGTGTGGGTCGTGG
GTGGTTCCGGCTGTTCAGGTGGTGGCGAGCAAGGTTGATCGGAAGGGGAG
GGAGGAGACGGAAGGGCTGGCGGTGGTGGACTTTGGAGCGAAGCTACGGG
AGAGGGAAGGACAACAAAGACGGCAGCAGCAGCGAGAAGGAAATGAGGAG
GGTTGTAAAGAAGCACTAAACGCAGAGGAAGGGTGACTGAAGGGAGAGAC
GGGAGAGGATGTAGTCGTCACACGGACAGTTTGGGAAGGAGTTGTCGTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACGTTGGTGGCGGCGGTGGT
GTTGGTGCTGATAGCAGAGCTGTTTGTCGTACTGCTGCTGCTTCTGCTGC
GGGGTCGGCAGCGGTCGCTGCTCATGGTGGCAGTGAATGAATCGAACGTA
AGAGAAGGAGGGAAGGGAAGATACGACCAGGTGTAAAAAGAGATGACTTG
TTAAAAAAAAAGGGCGGATGGCCTGGCCAAAGGCTTTCAAAGCG
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protein sequence of NO09G03400.1

>NO09G03400.1-protein ID=NO09G03400.1-protein|Name=NO09G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MTDPSTTPHASAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTL
SSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCP
NAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREETEGLAVVD
FGAKLREREGQQRRQQQREGNEEGCKEALNAEEG*
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mRNA from alignment at chr9:978609..979737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03400.1 ID=NO09G03400.1|Name=NO09G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1129bp|location=Sequence derived from alignment at chr9:978609..979737- (Nannochloropsis oceanica)
ACAAAGCAATTCAGGGCACCCACAGCCGCCTACTATCCTACTTTACTTTA
CCAGCATCGCATCTAGACGACCATCTTTCGCTTTGAGTCCAAGATGCTTC
TTTTCTCTCTGTTTTCCCGGCTGTTTCCACTCATCCCAAACCTCCCCATC
CCCCACTCCCACATCCCACAGCCAACAAAAAATGACAGACCCTAGCACCA
CGCCGCACGCATCAGCCATCAGCTTCACCTGTCGAATCTGCCGCCGAGAG
CTTTTCACGGACAAGGACTTGGAGCCGCATGCCGCCGGGGCTCAACGCAT
CAACCGCCGCAAGGTATATATGTCTCTTCTCATCTCCTCACCCGCCTGTC
CGCACTCCTTCTCTCCACATATCTGACACTAAATATCTCTGACTACAGCT
CGGCAGCGGTACTCTTTCGAGCGCGGCGAACGCTACGGCATGCACGTCCT
ATTTCCTCAATGAAGTGGCCTTGGAGAGCTTGAGCTGGGTACGCTCGGCA
CTCAAGGCCCATGACGATGCAGCAGAAGCTGGAGCGGAGGGAATAGAAGG
GAAATTAACATGTCCAAATGCCAAGTGTGGTGGTCGTCTAGGAAATTTTA
ATTGGAGCGGTTCGCAGTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTGTT
CAGGTGGTGGCGAGCAAGGTTGATCGGAAGGGGAGGGAGGAGACGGAAGG
GCTGGCGGTGGTGGACTTTGGAGCGAAGCTACGGGAGAGGGAAGGACAAC
AAAGACGGCAGCAGCAGCGAGAAGGAAATGAGGAGGGTTGTAAAGAAGCA
CTAAACGCAGAGGAAGGGTGACTGAAGGGAGAGACGGGAGAGGATGTAGT
CGTCACACGGACAGTTTGGGAAGGAGTTGTCGTTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGACGTTGGTGGCGGCGGTGGTGTTGGTGCTGATAGC
AGAGCTGTTTGTCGTACTGCTGCTGCTTCTGCTGCGGGGTCGGCAGCGGT
CGCTGCTCATGGTGGCAGTGAATGAATCGAACGTAAGAGAAGGAGGGAAG
GGAAGATACGACCAGGTGTAAAAAGAGATGACTTGTTAAAAAAAAAGGGC
GGATGGCCTGGCCAAAGGCTTTCAAAGCG
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Coding sequence (CDS) from alignment at chr9:978609..979737-

>NO09G03400.1 ID=NO09G03400.1|Name=NO09G03400.1|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr9:978609..979737- (Nannochloropsis oceanica)
ATGACAGACCCTAGCACCACGCCGCACGCATCAGCCATCAGCTTCACCTG
TCGAATCTGCCGCCGAGAGCTTTTCACGGACAAGGACTTGGAGCCGCATG
CCGCCGGGGCTCAACGCATCAACCGCCGCAAGCTCGGCAGCGGTACTCTT
TCGAGCGCGGCGAACGCTACGGCATGCACGTCCTATTTCCTCAATGAAGT
GGCCTTGGAGAGCTTGAGCTGGGTACGCTCGGCACTCAAGGCCCATGACG
ATGCAGCAGAAGCTGGAGCGGAGGGAATAGAAGGGAAATTAACATGTCCA
AATGCCAAGTGTGGTGGTCGTCTAGGAAATTTTAATTGGAGCGGTTCGCA
GTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTGTTCAGGTGGTGGCGAGCA
AGGTTGATCGGAAGGGGAGGGAGGAGACGGAAGGGCTGGCGGTGGTGGAC
TTTGGAGCGAAGCTACGGGAGAGGGAAGGACAACAAAGACGGCAGCAGCA
GCGAGAAGGAAATGAGGAGGGTTGTAAAGAAGCACTAAACGCAGAGGAAG
GGTGA
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Synonyms
Publications