NO09G03350, NO09G03350 (gene) Nannochloropsis oceanica

Overview
NameNO09G03350
Unique NameNO09G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1227
Alignment locationchr9:965071..966297 +

Link to JBrowse

Properties
Property NameValue
DescriptionADP-ribosylation factor-like protein 13B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:965071..966297 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005525GTP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR024156Small_GTPase_ARF
IPR006689Small_GTPase_ARF/SAR
Homology
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_022436491.1 (ADP-ribosylation factor-like protein 13A isoform X1 [Delphinapterus leucas])

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-9
Identity = 51/145 (35.17%), Postives = 72/145 (49.66%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIG 394
            P L TL    L DDY   +  +D+ G R  + ++WPS YAQA  LV+V D++  SR +E K +L   L  E V GKP+ +L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG
Sbjct:   55 PELTTL----LLDDY--EVSVYDLNGDRNGR-EIWPSYYAQAHGLVFVLDSSDLSRMQEVKVILPHLLSDERVAGKPILLLANKQDKKDALLLRDITEYLLLERLTNKNQSLCRVEPCSAIKNRQRRNHEPII-GGLRWLLSAIG 191
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_022436492.1 (ADP-ribosylation factor-like protein 13A isoform X2 [Delphinapterus leucas])

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-9
Identity = 51/145 (35.17%), Postives = 72/145 (49.66%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIG 394
            P L TL    L DDY   +  +D+ G R  + ++WPS YAQA  LV+V D++  SR +E K +L   L  E V GKP+ +L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG
Sbjct:   55 PELTTL----LLDDY--EVSVYDLNGDRNGR-EIWPSYYAQAHGLVFVLDSSDLSRMQEVKVILPHLLSDERVAGKPILLLANKQDKKDALLLRDITEYLLLERLTNKNQSLCRVEPCSAIKNRQRRNHEPII-GGLRWLLSAIG 191
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_023985236.1 (ADP-ribosylation factor-like protein 13A isoform X1 [Physeter catodon] >XP_023985237.1 ADP-ribosylation factor-like protein 13A isoform X1 [Physeter catodon] >XP_023985238.1 ADP-ribosylation factor-like protein 13A isoform X1 [Physeter catodon] >XP_023985239.1 ADP-ribosylation factor-like protein 13A isoform X1 [Physeter catodon])

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-9
Identity = 51/156 (32.69%), Postives = 76/156 (48.72%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIGCERGERGQCER 405
            P L TL    L DDY   +  +D+ G R  + ++WP+ YAQA  LV+V D++   R +E K +L   L  E V GKP+ +L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG +  E   C++
Sbjct:   55 PELTTL----LLDDY--EVSIYDLNGDRKGR-EIWPNYYAQAHGLVFVLDSSDVRRMQEVKVILPRLLSDERVAGKPILLLANKQDKKDALLLPDITEYLLLERLTNKNQPLCRVEPCSAIRNLQRRNHEPII-GGLRWLLSAIGDKNDELCACQQ 202
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_023985240.1 (ADP-ribosylation factor-like protein 13A isoform X3 [Physeter catodon] >XP_023985241.1 ADP-ribosylation factor-like protein 13A isoform X3 [Physeter catodon])

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-9
Identity = 51/156 (32.69%), Postives = 76/156 (48.72%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIGCERGERGQCER 405
            P L TL    L DDY   +  +D+ G R  + ++WP+ YAQA  LV+V D++   R +E K +L   L  E V GKP+ +L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG +  E   C++
Sbjct:    7 PELTTL----LLDDY--EVSIYDLNGDRKGR-EIWPNYYAQAHGLVFVLDSSDVRRMQEVKVILPRLLSDERVAGKPILLLANKQDKKDALLLPDITEYLLLERLTNKNQPLCRVEPCSAIRNLQRRNHEPII-GGLRWLLSAIGDKNDELCACQQ 154
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_007110944.2 (ADP-ribosylation factor-like protein 13A isoform X2 [Physeter catodon])

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-9
Identity = 51/156 (32.69%), Postives = 76/156 (48.72%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIGCERGERGQCER 405
            P L TL    L DDY   +  +D+ G R  + ++WP+ YAQA  LV+V D++   R +E K +L   L  E V GKP+ +L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG +  E   C++
Sbjct:   55 PELTTL----LLDDY--EVSIYDLNGDRKGR-EIWPNYYAQAHGLVFVLDSSDVRRMQEVKVILPRLLSDERVAGKPILLLANKQDKKDALLLPDITEYLLLERLTNKNQPLCRVEPCSAIRNLQRRNHEPII-GGLRWLLSAIGDKNDELCACQQ 202
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_024602293.1 (ADP-ribosylation factor-like protein 13A [Neophocaena asiaeorientalis asiaeorientalis])

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-9
Identity = 51/145 (35.17%), Postives = 72/145 (49.66%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIG 394
            P L TL    L DDY   +  +D+ G R  + ++WPS YAQA  LV+V D++  SR +E K +L   L  E V GKP+ +L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG
Sbjct:   55 PELTTL----LLDDY--EVSVYDLNGDRNGR-EIWPSYYAQAHGLVFVLDSSDLSRMQEVKVILPHLLSDERVAGKPILLLANKQDKKDALLLRDITEYLLLERLTNKNQSLCRVEPCSAIKNRQRRNHEPII-GGLRWLLSAIG 191
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_012393598.1 (PREDICTED: ADP-ribosylation factor-like protein 13A [Orcinus orca])

HSP 1 Score: 72.0 bits (175), Expect = 4.800e-9
Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIG 394
            P L TL    L DDY   +  +D+ G R  + ++WPS YAQA  LV+V D++  SR +E K +L   L  E V GKP+  L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG
Sbjct:   55 PELTTL----LLDDY--EVSVYDLNGDRNGR-EIWPSYYAQAHGLVFVLDSSDLSRMQEVKVILPHLLSDERVAGKPILFLANKQDKKDALLLRDITEYLLLERLTNKNQSLCRVEPCSAIKNRQRRNHEPII-GGLRWLLSAIG 191
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_004330592.2 (PREDICTED: ADP-ribosylation factor-like protein 13A [Tursiops truncatus])

HSP 1 Score: 72.0 bits (175), Expect = 4.800e-9
Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIG 394
            P L TL    L DDY   +  +D+ G R  + ++WPS YAQA  LV+V D++  SR +E K +L   L  E V GKP+  L NKQD           E  +   +      + RV+ C A         +P +  GL WL++AIG
Sbjct:   55 PELTTL----LLDDY--EVSVYDLNGDRNGR-EIWPSYYAQAHGLVFVLDSSDLSRMQEVKVILPHLLSDERVAGKPILFLANKQDKKDALLLRDITEYLLLERLTNKNQSLCRVEPCSAIKNRQRRNHEPII-GGLRWLLSAIG 191
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_004777223.1 (PREDICTED: ADP-ribosylation factor-like protein 13A [Mustela putorius furo])

HSP 1 Score: 69.7 bits (169), Expect = 2.400e-8
Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 0 
Query:  249 PTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIG 394
            P L+TL    L D+Y   +  +D+ G  +   ++WP+ YAQA  LV+V D++   R +E K +L   L  + V GKP+ +L NKQD          +E  +   +      + RV+ C A          P + EGL WL+AAIG
Sbjct:   55 PELITL----LLDEY--EVSIYDLNGD-MKGREIWPNYYAQAHGLVFVLDSSDLGRMQEVKIILTHLLADKRVAGKPLLLLANKQDKKDALLPCDIIEYLLLERLVNENKSLCRVEPCSAIKNVQRRNHQPII-EGLRWLLAAIG 191
[Close]
BLAST of NO09G03350 vs. NCBI_GenBank
Match: XP_001861447.1 (ADP-ribosylation factor [Culex quinquefasciatus] >EDS35632.1 ADP-ribosylation factor [Culex quinquefasciatus])

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-8
Identity = 41/132 (31.06%), Postives = 71/132 (53.79%), Query Frame = 0 
Query:  261 DDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAI 393
            D +  R+ F+D+ G +  Q  LW   Y+++ A+++V D+    R  E K V    +G+E + G P+ +L NKQD  LP   +G    E+  + +EAGH++ R D  +    +  G     ++EG+ WL+ +I
Sbjct:   65 DLHGIRMSFWDLGGQQELQ-SLWDKYYSESHAVIYVVDSNDRERMHETKEVFDRMIGNEYLSGVPLLVLANKQD--LP-DCMG--VREIKPVFQEAGHLIGRRDCLVMPVSALTG---EGVDEGIKWLVESI 187
The following BLAST results are available for this feature:
BLAST of NO09G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022436491.12.800e-935.17ADP-ribosylation factor-like protein 13A isoform X... [more]
XP_022436492.12.800e-935.17ADP-ribosylation factor-like protein 13A isoform X... [more]
XP_023985236.12.800e-932.69ADP-ribosylation factor-like protein 13A isoform X... [more]
XP_023985240.12.800e-932.69ADP-ribosylation factor-like protein 13A isoform X... [more]
XP_007110944.22.800e-932.69ADP-ribosylation factor-like protein 13A isoform X... [more]
XP_024602293.12.800e-935.17ADP-ribosylation factor-like protein 13A [Neophoca... [more]
XP_012393598.14.800e-935.17PREDICTED: ADP-ribosylation factor-like protein 13... [more]
XP_004330592.24.800e-935.17PREDICTED: ADP-ribosylation factor-like protein 13... [more]
XP_004777223.12.400e-833.10PREDICTED: ADP-ribosylation factor-like protein 13... [more]
XP_001861447.13.100e-831.06ADP-ribosylation factor [Culex quinquefasciatus] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL123nonsL123Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010876NSK010876Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03350.1NO09G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646046gene_4209Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03350.1NO09G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03350 ID=NO09G03350|Name=NO09G03350|organism=Nannochloropsis oceanica|type=gene|length=1227bp
ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC
CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG
ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT
GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAAGTGC
CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC
CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC
AAGTGGCTGGCTGAATTGCCAACTGTCGCAAGTAAGGAAAGAAACCAAGG
CATCAACAGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC
TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC
GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCGACAGGAGCAGAAGGC
ACAAGTCGAAGAAGAGATTCAGGTTCAACAAGACGAAAGCAGACAGGAGC
AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT
CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT
GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT
CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC
CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT
CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC
CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC
CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG
GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG
ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG
AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT
CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG
GTTTGGCCTGGTTAATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA
CAGTGCGAGAGAGAGGGAGGGGAATGA
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protein sequence of NO09G03350.1

>NO09G03350.1-protein ID=NO09G03350.1-protein|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MVESDAYYEASESADPSISPLETQAREYMEQHVDPVLTKALTEIHLHKPH
DACQALLNFFQERQESATGTAVVKHGRGKHYAEPAAAYDGVRVTDDAPAP
KWLAELPTVASKERNQGINRWYAVHHVLPILARLLRHLAVQQPSPDDGKL
DACVVAFLIRHRQEQKAQVEEEIQVQQDESRQEQHLLTAVTSSATVATAH
PPSPSPSPLIHVLVLGLEGSGKSTILAALQGDLSPSPPPSLSSSNSATPT
LVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDAT
QASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVG
SIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIGCERGERG
QCEREGGE*
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Synonyms
Publications