NO09G03350.1, NO09G03350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03350.1
Unique NameNO09G03350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1227
Alignment locationchr9:965071..966297 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:965071..966297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03350.1 vs.
Match: OQR99674.1 (ADP-ribosylation factor, partial [Thraustotheca clavata])

HSP 1 Score: 84.7 bits (208), Expect = 7.100e-13
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 0
Query:  212 VLVLGLEGSGKSTILAALQGDLSPSPPPSLSSSNSATPTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQD--TGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAI 393
            +L+LG++GSGKST+L+ LQGDL     PS            T  + +LP+   T   F+D+ G+   +  +W   Y+ A A+++V DA  ++R  E  +VL   + +  + GKP+ ++ NK+D  T +      R E + G    +      +V  CIA   +N  ++D  LE GL W++  +
Sbjct:  161 ILLLGIDGSGKSTLLSTLQGDLDKDHGPSAG---------YTSVKFQLPNGSAT---FYDLGGASTFR-DVWKEYYSDAHAVIYVVDAADSARMAEAASVLAQAMENPHLIGKPLLLMANKKDIPTAMGEKQFCR-EIQAGMYNNK------KVLECIAKPSANANIVDDRLEAGLMWVVQRV 323          
The following BLAST results are available for this feature:
BLAST of NO09G03350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR99674.17.100e-1330.60ADP-ribosylation factor, partial [Thraustotheca cl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03350NO09G03350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03350.1NO09G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03350.1.cds1NO09G03350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03350.1 ID=NO09G03350.1|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC
CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG
ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT
GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAAGTGC
CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC
CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC
AAGTGGCTGGCTGAATTGCCAACTGTCGCAAGTAAGGAAAGAAACCAAGG
CATCAACAGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC
TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC
GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCGACAGGAGCAGAAGGC
ACAAGTCGAAGAAGAGATTCAGGTTCAACAAGACGAAAGCAGACAGGAGC
AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT
CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT
GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT
CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC
CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT
CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC
CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC
CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG
GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG
ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG
AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT
CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG
GTTTGGCCTGGTTAATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA
CAGTGCGAGAGAGAGGGAGGGGAATGA
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protein sequence of NO09G03350.1

>NO09G03350.1-protein ID=NO09G03350.1-protein|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MVESDAYYEASESADPSISPLETQAREYMEQHVDPVLTKALTEIHLHKPH
DACQALLNFFQERQESATGTAVVKHGRGKHYAEPAAAYDGVRVTDDAPAP
KWLAELPTVASKERNQGINRWYAVHHVLPILARLLRHLAVQQPSPDDGKL
DACVVAFLIRHRQEQKAQVEEEIQVQQDESRQEQHLLTAVTSSATVATAH
PPSPSPSPLIHVLVLGLEGSGKSTILAALQGDLSPSPPPSLSSSNSATPT
LVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDAT
QASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVG
SIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIGCERGERG
QCEREGGE*
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mRNA from alignment at chr9:965071..966297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03350.1 ID=NO09G03350.1|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp|location=Sequence derived from alignment at chr9:965071..966297+ (Nannochloropsis oceanica)
ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAAGTGC CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC AAGTGGCTGGCTGAATTGCCAACTGTCGCAAGTAAGGAAAGAAACCAAGG CATCAACAGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCGACAGGAGCAGAAGGC ACAAGTCGAAGAAGAGATTCAGGTTCAACAAGACGAAAGCAGACAGGAGC AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG GTTTGGCCTGGTTAATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA CAGTGCGAGAGAGAGGGAGGGGAATGA
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Coding sequence (CDS) from alignment at chr9:965071..966297+

>NO09G03350.1 ID=NO09G03350.1|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr9:965071..966297+ (Nannochloropsis oceanica)
ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC
CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG
ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT
GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAAGTGC
CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC
CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC
AAGTGGCTGGCTGAATTGCCAACTGTCGCAAGTAAGGAAAGAAACCAAGG
CATCAACAGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC
TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC
GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCGACAGGAGCAGAAGGC
ACAAGTCGAAGAAGAGATTCAGGTTCAACAAGACGAAAGCAGACAGGAGC
AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT
CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT
GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT
CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC
CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT
CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC
CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC
CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG
GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG
ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG
AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT
CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG
GTTTGGCCTGGTTAATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA
CAGTGCGAGAGAGAGGGAGGGGAATGA
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Synonyms
Publications