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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:965071..966297 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03350.1 vs.
Match: OQR99674.1 (ADP-ribosylation factor, partial [Thraustotheca clavata]) HSP 1 Score: 84.7 bits (208), Expect = 7.100e-13 Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 0
Query: 212 VLVLGLEGSGKSTILAALQGDLSPSPPPSLSSSNSATPTLVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDATQASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQD--TGLPHHSLGRVEEEVGSIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAI 393
+L+LG++GSGKST+L+ LQGDL PS T + +LP+ T F+D+ G+ + +W Y+ A A+++V DA ++R E +VL + + + GKP+ ++ NK+D T + R E + G + +V CIA +N ++D LE GL W++ +
Sbjct: 161 ILLLGIDGSGKSTLLSTLQGDLDKDHGPSAG---------YTSVKFQLPNGSAT---FYDLGGASTFR-DVWKEYYSDAHAVIYVVDAADSARMAEAASVLAQAMENPHLIGKPLLLMANKKDIPTAMGEKQFCR-EIQAGMYNNK------KVLECIAKPSANANIVDDRLEAGLMWVVQRV 323
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03350.1 ID=NO09G03350.1|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAAGTGC CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC AAGTGGCTGGCTGAATTGCCAACTGTCGCAAGTAAGGAAAGAAACCAAGG CATCAACAGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCGACAGGAGCAGAAGGC ACAAGTCGAAGAAGAGATTCAGGTTCAACAAGACGAAAGCAGACAGGAGC AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG GTTTGGCCTGGTTAATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA CAGTGCGAGAGAGAGGGAGGGGAATGA back to topprotein sequence of NO09G03350.1 >NO09G03350.1-protein ID=NO09G03350.1-protein|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp MVESDAYYEASESADPSISPLETQAREYMEQHVDPVLTKALTEIHLHKPH DACQALLNFFQERQESATGTAVVKHGRGKHYAEPAAAYDGVRVTDDAPAP KWLAELPTVASKERNQGINRWYAVHHVLPILARLLRHLAVQQPSPDDGKL DACVVAFLIRHRQEQKAQVEEEIQVQQDESRQEQHLLTAVTSSATVATAH PPSPSPSPLIHVLVLGLEGSGKSTILAALQGDLSPSPPPSLSSSNSATPT LVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDAT QASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVG SIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIGCERGERG QCEREGGE* back to topmRNA from alignment at chr9:965071..966297+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03350.1 ID=NO09G03350.1|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp|location=Sequence derived from alignment at chr9:965071..966297+ (Nannochloropsis oceanica) ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC
CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG
ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT
GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAAGTGC
CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC
CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC
AAGTGGCTGGCTGAATTGCCAACTGTCGCAAGTAAGGAAAGAAACCAAGG
CATCAACAGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC
TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC
GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCGACAGGAGCAGAAGGC
ACAAGTCGAAGAAGAGATTCAGGTTCAACAAGACGAAAGCAGACAGGAGC
AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT
CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT
GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT
CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC
CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT
CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC
CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC
CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG
GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG
ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG
AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT
CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG
GTTTGGCCTGGTTAATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA
CAGTGCGAGAGAGAGGGAGGGGAATGA back to topCoding sequence (CDS) from alignment at chr9:965071..966297+ >NO09G03350.1 ID=NO09G03350.1|Name=NO09G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr9:965071..966297+ (Nannochloropsis oceanica) ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAAGTGC CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC AAGTGGCTGGCTGAATTGCCAACTGTCGCAAGTAAGGAAAGAAACCAAGG CATCAACAGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCGACAGGAGCAGAAGGC ACAAGTCGAAGAAGAGATTCAGGTTCAACAAGACGAAAGCAGACAGGAGC AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG GTTTGGCCTGGTTAATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA CAGTGCGAGAGAGAGGGAGGGGAATGA back to top
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