NO09G03200, NO09G03200 (gene) Nannochloropsis oceanica

Overview
NameNO09G03200
Unique NameNO09G03200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1958
Alignment locationchr9:928385..930342 -

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Properties
Property NameValue
Descriptionchloroplast RNA-binding protein 31B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:928385..930342 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO09G03200 vs. NCBI_GenBank
Match: EWM27480.1 (rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 379.8 bits (974), Expect = 7.400e-102
Identity = 194/273 (71.06%), Postives = 214/273 (78.39%), Query Frame = 0
Query:    7 SSSIIYGSLLLALVASMTQGYFFPSPLAPMQKRCM-NAHRLSNRGAVLPRLRLPPLPSSISDFLDDDKDSVARPAPXXXXXXXXXXXXXXQDDNLEYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRTMAKKEGG 279
            SS II G+L LA V ++TQGY FP     +Q+RCM +  R    G    R  L P+PSSISDFLDD  D    P P X             D N++YFVRCGRC+AAY+V ADLV+PEGGRVKCEVCGHTWFQASNRLQVLS GYVLKDYP+DL+EKVAENVRNNRHPLDTSA+KGAISVFVGNLPFSM E D++ MF  HGGVVSVTIVKDQLNRSKGFGFVEMA KEEGE AIAALDGRE+DGRPINVRLGTSKAQPRMRK+RT  K+ GG
Sbjct:    4 SSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSXAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGG 276          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: XP_005789164.1 (hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516] >EOD36735.1 hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 123.6 bits (309), Expect = 9.600e-25
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 0
Query:  104 VRCGRCSAAYSVPADLVKPEGG-RVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMR 268
            + C  C A+YSV  D + P  G RV+C  C H WFQ+  RL  L +   L +YP ++++++A            + ++ A   +VGNLPF + EE++ ++FG +G VV V ++ D+  RS+GF FV M + EEG  A+ AL+G  + GR INV  G  +   R R
Sbjct:   49 ITCSNCKASYSVEEDALGPGAGKRVRCSNCDHEWFQSVARLARLPEDMELVEYPQEMKDRMAAG--------KPAEARAAFRAYVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQGRAINVSEGRQQEGGRGR 205          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: XP_005710926.1 (unnamed protein product [Chondrus crispus] >CDF40632.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 118.6 bits (296), Expect = 3.100e-23
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 0
Query:   97 DDNLEYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNR------HPLDTSASKGAI----------------------SVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLG 259
            D    YF +CG C AAY +  D   P G +V C VCG+ WFQ ++RL  L QG   K+YP D ++++ E  +  R         D    +G                        S+F+GNLPF+  +ED++ + G       V I++D   RSKGF F ++  +E  + A++ LDG+E+ GR I VR G
Sbjct:  100 DPTATYFTKCGSCQAAYKLDPDFPGPRGKKVACSVCGNQWFQRADRLMTLRQGDQFKEYPVDQKDELMEKQQQLRMERFRARSNDGGDRRGGYRRDGPREGQGARRSNSRNFSPHSLFIGNLPFNTEQEDLERVVGQVVEFTRVAIIRDPTGRSKGFAFADVKSEEAVQMAVSKLDGKELGGRAITVREG 289          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: CBJ27692.1 (RNA recognition motif-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 114.4 bits (285), Expect = 5.800e-22
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 0
Query:  103 FVRCGRCSAAYSVPADL-VKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGA-ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLG 259
            +V+CG+C A Y  P DL V   G  ++C VCG+ WFQ + R   L+  +++KD+ +D     AE           +A K A  ++FVGN+PFS+ E+D+  +FG  G V S  +V D+   S+G+G V+M  +E+G +AI AL+G EI GR + V++G
Sbjct:  139 YVKCGKCQACY--PMDLEVLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAE-----------AAKKFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVG 283          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: GAX25626.1 (hypothetical protein FisN_28Hh106 [Fistulifera solaris])

HSP 1 Score: 114.4 bits (285), Expect = 5.800e-22
Identity = 54/155 (34.84%), Postives = 91/155 (58.71%), Query Frame = 0
Query:  103 FVRCGRCSAAYSVPA-DLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVR 257
            +VRCG+C + + +   D     G R++C VC H+WFQ+ ++L  L++G+ +   P+   E++  N++    P       G   +++GN+ F   E+D+  +FG  G V  V++V+D   R++GFGF+ M  KE+GE+AI  L+G  + GR I VR
Sbjct:   43 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQNNMQKGLSP----KFMGDFKLYIGNIAFECHEDDLYEVFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEDGEKAIEELNGAPVRGRNIAVR 193          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: GAX21414.1 (RNA binding protein fox-1 [Fistulifera solaris])

HSP 1 Score: 113.2 bits (282), Expect = 1.300e-21
Identity = 55/155 (35.48%), Postives = 90/155 (58.06%), Query Frame = 0
Query:  103 FVRCGRCSAAYSVPA-DLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVR 257
            +VRCG+C + + +   D     G R++C VC H+WFQ+ ++L  L++G+ +   P+   E++  N++    P       G   ++VGN+ F   E+D+  +FG  G V  V++V+D   R++GFGF+ M  KE GE+AI  L+G  + GR I VR
Sbjct:   54 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQSNMQKGLSP----KFMGDFKLYVGNIAFECHEDDLYEIFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIEELNGTPVRGRNIAVR 204          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: XP_005821647.1 (hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712] >EKX34667.1 hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712])

HSP 1 Score: 109.4 bits (272), Expect = 1.900e-20
Identity = 57/161 (35.40%), Postives = 92/161 (57.14%), Query Frame = 0
Query:  103 FVRCGRCSAAYSV-PADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQ-LNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSK 262
            +  CG+C A Y + PADL   +G +V+C VC + WFQ++ RL     G   + +P    +K  +              KGA ++FVGNLPF + E +++ +F  HG VVSV+++ DQ   R +GFGFV+   ++  ++A++ L+G  +DGR I+V +   K
Sbjct:   55 YTTCGKCGAVYVINPADL-GSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSISEDK 214          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_093919651.1 (RNA-binding protein [Sunxiuqinia elliptica] >SFF23879.1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [Sunxiuqinia elliptica])

HSP 1 Score: 84.7 bits (208), Expect = 4.900e-13
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 0
Query:  183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDR 271
            ++++VGNL +++GE+++  +F  +G VVSV IVKD +  R+KGFGFVEMAV+ EG++A+  LDG E++GR I V     + +   R+DR
Sbjct:    1 MNIYVGNLDYNLGEDELGEIFAEYGEVVSVKIVKDRETGRAKGFGFVEMAVEAEGDKAVEELDGAEVNGRNIKVNKARPRPERPPRRDR 89          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_014812077.1 (RNA-binding protein [Desulfomonile tiedjei] >AFM26957.1 RRM domain-containing RNA-binding protein [Desulfomonile tiedjei DSM 6799])

HSP 1 Score: 84.0 bits (206), Expect = 8.400e-13
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0
Query:  182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDR 271
            +I ++VGNL F   E D+K +F  +G V S  ++ DQ  NRS+GFGF+EM  +EEG +AI ALD +++ GRP+ V     K   R R+DR
Sbjct:    2 SIKIYVGNLSFDSSEADLKGLFSTYGEVESAKVIVDQFTNRSRGFGFIEMTNREEGLKAIQALDSKDLAGRPLKVNEAKPKTDNRDRRDR 91          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_086103155.1 (RNA-binding protein [Chitinophagaceae bacterium IBVUCB2] >OSZ80701.1 RNA-binding protein [Chitinophagaceae bacterium IBVUCB2])

HSP 1 Score: 83.2 bits (204), Expect = 1.400e-12
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 0
Query:  183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264
            ++++VGNL +++ ++D+ N+F AHG VVS  IV D+  NRSKGFGFVEMA  E+ + AIAAL+G E+DGR I V     K +
Sbjct:    1 MNIYVGNLSWNLKDQDLSNLFAAHGEVVSAKIVTDKFTNRSKGFGFVEMANDEQAQAAIAALNGSEVDGRGIVVNESRPKPE 82          
The following BLAST results are available for this feature:
BLAST of NO09G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27480.17.400e-10271.06rna-binding protein [Nannochloropsis gaditana][more]
XP_005789164.19.600e-2537.58hypothetical protein EMIHUDRAFT_420859 [Emiliania ... [more]
XP_005710926.13.100e-2333.68unnamed protein product [Chondrus crispus] >CDF406... [more]
CBJ27692.15.800e-2239.24RNA recognition motif-containing protein [Ectocarp... [more]
GAX25626.15.800e-2234.84hypothetical protein FisN_28Hh106 [Fistulifera sol... [more]
GAX21414.11.300e-2135.48RNA binding protein fox-1 [Fistulifera solaris][more]
XP_005821647.11.900e-2035.40hypothetical protein GUITHDRAFT_119213 [Guillardia... [more]
WP_093919651.14.900e-1346.07RNA-binding protein [Sunxiuqinia elliptica] >SFF23... [more]
WP_014812077.18.400e-1345.56RNA-binding protein [Desulfomonile tiedjei] >AFM26... [more]
WP_086103155.11.400e-1251.22RNA-binding protein [Chitinophagaceae bacterium IB... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03200.1NO09G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639002gene_4224Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100174g2gene3076Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03200.1NO09G03200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03200 ID=NO09G03200|Name=NO09G03200|organism=Nannochloropsis oceanica|type=gene|length=1958bp
AACACTACAGCAAAACCAATGGCCCAATCAAGCAGAAGCAGCAGCATAAT
ATATGGCAGCCTCCTCCTCGCCCTCGTGGCCAGCATGACGCAGGGCTATT
TCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCGATGCATGAATGCGCAC
CGCCTTTCCAACCGTGgtacgtggcgtggccactctaggtcgagtccttc
cttccttcctttctttctttccttccctcctgctcgagatagtaggagga
tggcatgcgaggacgcgacggccagctcatcataagcactagcaatcaca
ctctcctacctgtgtatcctactctaccctcatccacctcaccctcaatt
aactcccttatcctacctgtttcttcccttccaatcaaccccgtccccat
cgtcacagGCGCCGTCCTCCCCCGTCTCCGCCTCCCCCCCCTTCCCTCTT
CCATCTCGGATTTTCTGGACGATGACAAGGACTCTGTCGCTCGCCCTGCC
CCTTCCTCCCCCTCCTCCTCCTCCTCTCCAGCGTCTTCCACCCCTCAGGA
TGACAACTTGGAGTATTTCGTCAGATGCGGTCGCTGCAGTGCCGCCTATT
CCGTGCCTGCGGATCTGGTGAAGCCGGAGGGAGGCCGAGTGAAGTGCGAG
GTGTGTGGACATACCTGGTTCCAGGCCTCGAACCGGCTGCAGGTGCTGAG
CCAGGGCTACGTGCTCAAGgtgaggagcaagcgagggagggagggaagga
agggcggcaggagagttggagaaacggagatcacaggggctaaactaagt
tcaatgacatgtataggtctactcactcatcgatcttcccctcccttcct
ctcttcctcaatcttcccctcccttcctctcttccccaagGACTACCCCG
ATGACCTCAGGGAGAAAGTGGCCGAGAATGTGCGCAACAACCGCCATCCC
CTCGACACCAGTGCCTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAACTT
GCCTTTCTCGgtacgtgtgattggctgaaacggagggagggtgggagaga
gggagggaggaagggagggaaagcgtagtggggatttcatgcttgggaag
tggttgccttgtgaaggcgatcctttctcgcgcaaggagcaccttaatct
tgcctctcaatcccagactagaatgataattgtaccaatggtaaagctta
taacactatcggtgactcggatcataccgacttatttcacttccttcccc
tccctcccatcctccctccctacgcctgccttctagATGGGCGAGGAGGA
CATCAAGAACATGTTCGGGGCGCACGGTGGCGTCGTTTCGGTAACCATCG
TCAAGGATCAGCTCAACCGGTCCAAAGGTTTTGGTTTCGTCGAGgtatgt
ggttctccgcccttctattccccttttccctttccttctcccccccatcc
cctttcccccctcccttctatccataacgacatgaattcatgttacaccg
acgcacattcacctctccctccttccctctctgtctctaacacgcgccca
gATGGCGGTCAAGGAGGAAGGCGAGGAGGCCATTGCGGCTTTAGATGGAC
GTGAGATTGACGGACGCCCCATTAATGTACGACTAGGCACGAGCAAGGCA
CAGCCCCGTATGCGCAAGGACCGTACGATGGCCAAGAAGGAGGGAGGGGA
GCTGTTGTCTTAGATTGATGGTGACGACTTATGAAGCGTTGATGAATAAG
TGCGAGTGTGTTTTGTAAGTGAATGTGTGTGTGTGTGTGAGGAGATGGGA
GGGAGGAAGGATCAAGCAGGTGCCGGGGTCTAATGGAAAATAAGAAGAGG
GGAATGAAAGAGGGAGGGTGGATGGGTGAGGGGTAAGAAGAAGGGTAGAT
GTTTCGTGGAGAACGCCAATAATGAAATCAAGACCGACAAAGAGCTTTTG
AGAAGGAG
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protein sequence of NO09G03200.1

>NO09G03200.1-protein ID=NO09G03200.1-protein|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MAQSSRSSSIIYGSLLLALVASMTQGYFFPSPLAPMQKRCMNAHRLSNRG
AVLPRLRLPPLPSSISDFLDDDKDSVARPAPSSPSSSSSPASSTPQDDNL
EYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGY
VLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIK
NMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDG
RPINVRLGTSKAQPRMRKDRTMAKKEGGELLS*
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Synonyms
Publications