NO09G03200.1, NO09G03200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03200.1
Unique NameNO09G03200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1112
Alignment locationchr9:928385..930342 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:928385..930342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03200.1 vs.
Match: EWM27480.1 (rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 377.5 bits (968), Expect = 3.700e-101
Identity = 194/273 (71.06%), Postives = 218/273 (79.85%), Query Frame = 0 
Query:    7 SSSIIYGSLLLALVASMTQGYFFPSPLAPMQKRCMNA-HRLSNRGAVLPRLRLPPLPSSISDFLDDDKDSVARPAPSSPSSSSSPASSTPQDDNLEYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRTMAKKEGG 279
            SS II G+L LA V ++TQGY FP     +Q+RCM +  R    G    R  L P+PSSISDFLDD  D    P PS  ++     ++   D N++YFVRCGRC+AAY+V ADLV+PEGGRVKCEVCGHTWFQASNRLQVLS GYVLKDYP+DL+EKVAENVRNNRHPLDTSA+KGAISVFVGNLPFSM E D++ MF  HGGVVSVTIVKDQLNRSKGFGFVEMA KEEGE AIAALDGRE+DGRPINVRLGTSKAQPRMRK+RT  K+ GG
Sbjct:    4 SSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGG 276
The following BLAST results are available for this feature:
BLAST of NO09G03200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27480.13.700e-10171.06rna-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03200NO09G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03200.1NO09G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03200.1.cds1NO09G03200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03200.1.cds2NO09G03200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03200.1.cds3NO09G03200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03200.1.cds4NO09G03200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03200.1.cds5NO09G03200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03200.1 ID=NO09G03200.1|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp
AACACTACAGCAAAACCAATGGCCCAATCAAGCAGAAGCAGCAGCATAAT
ATATGGCAGCCTCCTCCTCGCCCTCGTGGCCAGCATGACGCAGGGCTATT
TCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCGATGCATGAATGCGCAC
CGCCTTTCCAACCGTGGCGCCGTCCTCCCCCGTCTCCGCCTCCCCCCCCT
TCCCTCTTCCATCTCGGATTTTCTGGACGATGACAAGGACTCTGTCGCTC
GCCCTGCCCCTTCCTCCCCCTCCTCCTCCTCCTCTCCAGCGTCTTCCACC
CCTCAGGATGACAACTTGGAGTATTTCGTCAGATGCGGTCGCTGCAGTGC
CGCCTATTCCGTGCCTGCGGATCTGGTGAAGCCGGAGGGAGGCCGAGTGA
AGTGCGAGGTGTGTGGACATACCTGGTTCCAGGCCTCGAACCGGCTGCAG
GTGCTGAGCCAGGGCTACGTGCTCAAGGACTACCCCGATGACCTCAGGGA
GAAAGTGGCCGAGAATGTGCGCAACAACCGCCATCCCCTCGACACCAGTG
CCTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAACTTGCCTTTCTCGATG
GGCGAGGAGGACATCAAGAACATGTTCGGGGCGCACGGTGGCGTCGTTTC
GGTAACCATCGTCAAGGATCAGCTCAACCGGTCCAAAGGTTTTGGTTTCG
TCGAGATGGCGGTCAAGGAGGAAGGCGAGGAGGCCATTGCGGCTTTAGAT
GGACGTGAGATTGACGGACGCCCCATTAATGTACGACTAGGCACGAGCAA
GGCACAGCCCCGTATGCGCAAGGACCGTACGATGGCCAAGAAGGAGGGAG
GGGAGCTGTTGTCTTAGATTGATGGTGACGACTTATGAAGCGTTGATGAA
TAAGTGCGAGTGTGTTTTGTAAGTGAATGTGTGTGTGTGTGTGAGGAGAT
GGGAGGGAGGAAGGATCAAGCAGGTGCCGGGGTCTAATGGAAAATAAGAA
GAGGGGAATGAAAGAGGGAGGGTGGATGGGTGAGGGGTAAGAAGAAGGGT
AGATGTTTCGTGGAGAACGCCAATAATGAAATCAAGACCGACAAAGAGCT
TTTGAGAAGGAG
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protein sequence of NO09G03200.1

>NO09G03200.1-protein ID=NO09G03200.1-protein|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MAQSSRSSSIIYGSLLLALVASMTQGYFFPSPLAPMQKRCMNAHRLSNRG
AVLPRLRLPPLPSSISDFLDDDKDSVARPAPSSPSSSSSPASSTPQDDNL
EYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGY
VLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIK
NMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDG
RPINVRLGTSKAQPRMRKDRTMAKKEGGELLS*
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mRNA from alignment at chr9:928385..930342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03200.1 ID=NO09G03200.1|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp|location=Sequence derived from alignment at chr9:928385..930342- (Nannochloropsis oceanica)
AACACTACAGCAAAACCAATGGCCCAATCAAGCAGAAGCAGCAGCATAAT
ATATGGCAGCCTCCTCCTCGCCCTCGTGGCCAGCATGACGCAGGGCTATT
TCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCGATGCATGAATGCGCAC
CGCCTTTCCAACCGTGGTACGTGGCGTGGCCACTCTAGGTCGAGTCCTTC
CTTCCTTCCTTTCTTTCTTTCCTTCCCTCCTGCTCGAGATAGTAGGAGGA
TGGCATGCGAGGACGCGACGGCCAGCTCATCATAAGCACTAGCAATCACA
CTCTCCTACCTGTGTATCCTACTCTACCCTCATCCACCTCACCCTCAATT
AACTCCCTTATCCTACCTGTTTCTTCCCTTCCAATCAACCCCGTCCCCAT
CGTCACAGGCGCCGTCCTCCCCCGTCTCCGCCTCCCCCCCCTTCCCTCTT
CCATCTCGGATTTTCTGGACGATGACAAGGACTCTGTCGCTCGCCCTGCC
CCTTCCTCCCCCTCCTCCTCCTCCTCTCCAGCGTCTTCCACCCCTCAGGA
TGACAACTTGGAGTATTTCGTCAGATGCGGTCGCTGCAGTGCCGCCTATT
CCGTGCCTGCGGATCTGGTGAAGCCGGAGGGAGGCCGAGTGAAGTGCGAG
GTGTGTGGACATACCTGGTTCCAGGCCTCGAACCGGCTGCAGGTGCTGAG
CCAGGGCTACGTGCTCAAGGTGAGGAGCAAGCGAGGGAGGGAGGGAAGGA
AGGGCGGCAGGAGAGTTGGAGAAACGGAGATCACAGGGGCTAAACTAAGT
TCAATGACATGTATAGGTCTACTCACTCATCGATCTTCCCCTCCCTTCCT
CTCTTCCTCAATCTTCCCCTCCCTTCCTCTCTTCCCCAAGGACTACCCCG
ATGACCTCAGGGAGAAAGTGGCCGAGAATGTGCGCAACAACCGCCATCCC
CTCGACACCAGTGCCTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAACTT
GCCTTTCTCGGTACGTGTGATTGGCTGAAACGGAGGGAGGGTGGGAGAGA
GGGAGGGAGGAAGGGAGGGAAAGCGTAGTGGGGATTTCATGCTTGGGAAG
TGGTTGCCTTGTGAAGGCGATCCTTTCTCGCGCAAGGAGCACCTTAATCT
TGCCTCTCAATCCCAGACTAGAATGATAATTGTACCAATGGTAAAGCTTA
TAACACTATCGGTGACTCGGATCATACCGACTTATTTCACTTCCTTCCCC
TCCCTCCCATCCTCCCTCCCTACGCCTGCCTTCTAGATGGGCGAGGAGGA
CATCAAGAACATGTTCGGGGCGCACGGTGGCGTCGTTTCGGTAACCATCG
TCAAGGATCAGCTCAACCGGTCCAAAGGTTTTGGTTTCGTCGAGGTATGT
GGTTCTCCGCCCTTCTATTCCCCTTTTCCCTTTCCTTCTCCCCCCCATCC
CCTTTCCCCCCTCCCTTCTATCCATAACGACATGAATTCATGTTACACCG
ACGCACATTCACCTCTCCCTCCTTCCCTCTCTGTCTCTAACACGCGCCCA
GATGGCGGTCAAGGAGGAAGGCGAGGAGGCCATTGCGGCTTTAGATGGAC
GTGAGATTGACGGACGCCCCATTAATGTACGACTAGGCACGAGCAAGGCA
CAGCCCCGTATGCGCAAGGACCGTACGATGGCCAAGAAGGAGGGAGGGGA
GCTGTTGTCTTAGATTGATGGTGACGACTTATGAAGCGTTGATGAATAAG
TGCGAGTGTGTTTTGTAAGTGAATGTGTGTGTGTGTGTGAGGAGATGGGA
GGGAGGAAGGATCAAGCAGGTGCCGGGGTCTAATGGAAAATAAGAAGAGG
GGAATGAAAGAGGGAGGGTGGATGGGTGAGGGGTAAGAAGAAGGGTAGAT
GTTTCGTGGAGAACGCCAATAATGAAATCAAGACCGACAAAGAGCTTTTG
AGAAGGAG
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Coding sequence (CDS) from alignment at chr9:928385..930342-

>NO09G03200.1 ID=NO09G03200.1|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr9:928385..930342- (Nannochloropsis oceanica)
ATGGCCCAATCAAGCAGAAGCAGCAGCATAATATATGGCAGCCTCCTCCT
CGCCCTCGTGGCCAGCATGACGCAGGGCTATTTCTTCCCCTCCCCCTTGG
CGCCCATGCAAAAGCGATGCATGAATGCGCACCGCCTTTCCAACCGTGGC
GCCGTCCTCCCCCGTCTCCGCCTCCCCCCCCTTCCCTCTTCCATCTCGGA
TTTTCTGGACGATGACAAGGACTCTGTCGCTCGCCCTGCCCCTTCCTCCC
CCTCCTCCTCCTCCTCTCCAGCGTCTTCCACCCCTCAGGATGACAACTTG
GAGTATTTCGTCAGATGCGGTCGCTGCAGTGCCGCCTATTCCGTGCCTGC
GGATCTGGTGAAGCCGGAGGGAGGCCGAGTGAAGTGCGAGGTGTGTGGAC
ATACCTGGTTCCAGGCCTCGAACCGGCTGCAGGTGCTGAGCCAGGGCTAC
GTGCTCAAGGACTACCCCGATGACCTCAGGGAGAAAGTGGCCGAGAATGT
GCGCAACAACCGCCATCCCCTCGACACCAGTGCCTCCAAGGGCGCCATCT
CTGTGTTCGTGGGGAACTTGCCTTTCTCGATGGGCGAGGAGGACATCAAG
AACATGTTCGGGGCGCACGGTGGCGTCGTTTCGGTAACCATCGTCAAGGA
TCAGCTCAACCGGTCCAAAGGTTTTGGTTTCGTCGAGATGGCGGTCAAGG
AGGAAGGCGAGGAGGCCATTGCGGCTTTAGATGGACGTGAGATTGACGGA
CGCCCCATTAATGTACGACTAGGCACGAGCAAGGCACAGCCCCGTATGCG
CAAGGACCGTACGATGGCCAAGAAGGAGGGAGGGGAGCTGTTGTCTTAG
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Synonyms
Publications