NO09G02850, NO09G02850 (gene) Nannochloropsis oceanica

Overview
NameNO09G02850
Unique NameNO09G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1166
Alignment locationchr9:841730..842895 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:841730..842895 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO09G02850 vs. NCBI_GenBank
Match: EWM27514.1 (hypothetical protein Naga_100101g6 [Nannochloropsis gaditana])

HSP 1 Score: 261.5 bits (667), Expect = 2.700e-66
Identity = 147/270 (54.44%), Postives = 185/270 (68.52%), Query Frame = 0 
Query:    1 MSASSHFWGGSR-LLQGLVRRRSSGP-----GTTGQNLLPFAPCFTNSXXXXXXXXXXXXXXXXXXXXXXSIKS----ELGRVVKLSSNSRLANRDDIKAAVTTALEGGQVKTLDPILFKGVYPSNAWLVELSSREAAHRLVRFGQIHAAGGVMKVEELREEEAARLQVASELGLDDCCIQLQHVPLGMGIDEVAYFFRNFQLSPKGIRQVETTMRQPSV-AWYKKTGGGRMGSSVFLVRFATADEAQRAIRERQFEKWGDRRIQIIPYK 260
            M AS H    SR +LQ LVRRRS G      G++  NL        +S                      S KS    E+  VVK+++NSR+ANR+D KAAV TALEG + + +DPILFKG++PS++WLVELSSRE A RL++F +IHA GG MKVE L+++ AA L++AS+ GLDD CIQLQHVP  MG+DEVAYFFR+FQ++PK IRQV +   Q S+ AW +KTG  R GSS F++ F TADEAQRAIRERQFE+WGDRRIQ++PYK
Sbjct:    1 MPASLHLGRSSRMMLQNLVRRRSGGTLSGAVGSSPSNL-------PSSLLLHRMRATGTPPLAPLSSSGTSRKSESVFEMRNVVKVTTNSRMANREDTKAAVQTALEGREARRVDPILFKGIFPSSSWLVELSSREDAERLLQFKRIHAGGGWMKVEALKDDGAAGLELASQQGLDDRCIQLQHVPPNMGVDEVAYFFRDFQVNPKSIRQVGSIKPQASLSAWERKTGSARTGSSSFVMCFTTADEAQRAIRERQFERWGDRRIQLVPYK 263
The following BLAST results are available for this feature:
BLAST of NO09G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27514.12.700e-6654.44hypothetical protein Naga_100101g6 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR022ncniR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010817NSK010817Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02850.1NO09G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588544gene_4263Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100101g6gene3044Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02850.1NO09G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02850 ID=NO09G02850|Name=NO09G02850|organism=Nannochloropsis oceanica|type=gene|length=1166bp
GTGATGAATGAATGGGAGAGATGGGGTGGAGTGAGTCTTAAACGTACAAC
ACATGCAAATTCGTCGCCACGCGATAGTGACAGTGGGCATATAAGTAGAA
AAAGAGGTGGAAATGTAGCTTTATCGAGGGTCCTTTGAAGACACATCTCC
CGCCTTGTTCCTCCCCCAGCCCCAGCCATCTTTCTTGAGTATCTAACTCA
CTCACACATCCAACACAAGAACACCACGCAACCCATAGCCCTCTACTATG
TCCGCTTCCTCGCATTTCTGGGGTGGCAGCCGCCTGCTCCAAGGCCTGGT
CCGGAGAAGAAGTAGCGGTCCCGGCACCACAGGCCAAAACCTCCTCCCCT
TTGCTCCATGCTTCACGAATAGCACAACGTCGACCGCCGCTTCTTTTTCC
TCCGCCACTGCAGCAGCCACCGCTAGCACACCTCCCAGCAGTATTAAGAG
TGAGCTTGGGCGCGTGGTGAAGCTGTCGTCCAATTCTCGGCTTGCAAATA
GGGACGACATAAAGGCCGCCGTGACGACGGCGTTGGAAGGAGGGCAAGTC
AAGACCTTGGACCCAATCCTCTTCAAGGGTGTCTACCCTAGTAATGCCTG
GTTAGTAGAGCTGTCCTCTCGTGAGGCAGCACATCGGCTGGTGCGATTTG
GTCAGATTCATGCGGCAGGCGGGGTGATGAAGGTGGAGGAGCTGAGGGAG
GAAGAGGCAGCGCGACTTCAAGTGGCATCGGAGTTAGGATTGGACGATTG
CTGCATTCAGTTACAGCACGTCCCGTTAGGCATGGGCATTGATGAGGTGG
CTTATTTCTTCCGAAATTTTCAATTGTCTCCGAAGGGGATTCGGCAGGTA
GAGACGACCATGCGACAGCCAAGCGTGGCGTGGTACAAGAAGACGGGCGG
GGGACGAATGGGCTCGTCTGTGTTCTTGGTACGGTTCGCCACAGCGGACG
AGGCACAACGTGCTATTCGAGAACGGCAGTTTGAGAAGTGGGGGGATAGG
AGGATACAGATTATTCCGTACAAGTAAAATAAAGATGAAAGAGTCGGAGG
AAGTGTGGACTACAGTGAGGGAGGTGGAGGAGGGGAATGAATGTGGAATC
AACTTGGGCACGTCTGTGAAAAAAAAGCTAGCACCATCAGGAAGATAAAA
AACAAGGAACATTACG
back to top

protein sequence of NO09G02850.1

>NO09G02850.1-protein ID=NO09G02850.1-protein|Name=NO09G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSASSHFWGGSRLLQGLVRRRSSGPGTTGQNLLPFAPCFTNSTTSTAASF
SSATAAATASTPPSSIKSELGRVVKLSSNSRLANRDDIKAAVTTALEGGQ
VKTLDPILFKGVYPSNAWLVELSSREAAHRLVRFGQIHAAGGVMKVEELR
EEEAARLQVASELGLDDCCIQLQHVPLGMGIDEVAYFFRNFQLSPKGIRQ
VETTMRQPSVAWYKKTGGGRMGSSVFLVRFATADEAQRAIRERQFEKWGD
RRIQIIPYK*
back to top
Synonyms
Publications