NO09G02850.1, NO09G02850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02850.1
Unique NameNO09G02850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1166
Alignment locationchr9:841730..842895 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:841730..842895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02850.1 vs.
Match: EWM27514.1 (hypothetical protein Naga_100101g6 [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 2.300e-65
Identity = 144/263 (54.75%), Postives = 186/263 (70.72%), Query Frame = 0 
Query:    1 MSASSHFWGGSRL-LQGLVRRRSSGP--GTTGQNLLPFAPCFTNSTTSTAASFSSATAAATASTPPSSIKSELGRVVKLSSNSRLANRDDIKAAVTTALEGGQVKTLDPILFKGVYPSNAWLVELSSREAAHRLVRFGQIHAAGGVMKVEELREEEAARLQVASELGLDDCCIQLQHVPLGMGIDEVAYFFRNFQLSPKGIRQVETTMRQPSV-AWYKKTGGGRMGSSVFLVRFATADEAQRAIRERQFEKWGDRRIQIIPYK 260
            M AS H    SR+ LQ LVRRRS G   G  G +                 +   A  +++ ++  S    E+  VVK+++NSR+ANR+D KAAV TALEG + + +DPILFKG++PS++WLVELSSRE A RL++F +IHA GG MKVE L+++ AA L++AS+ GLDD CIQLQHVP  MG+DEVAYFFR+FQ++PK IRQV +   Q S+ AW +KTG  R GSS F++ F TADEAQRAIRERQFE+WGDRRIQ++PYK
Sbjct:    1 MPASLHLGRSSRMMLQNLVRRRSGGTLSGAVGSSPSNLPSSLLLHRMRATGTPPLAPLSSSGTSRKSESVFEMRNVVKVTTNSRMANREDTKAAVQTALEGREARRVDPILFKGIFPSSSWLVELSSREDAERLLQFKRIHAGGGWMKVEALKDDGAAGLELASQQGLDDRCIQLQHVPPNMGVDEVAYFFRDFQVNPKSIRQVGSIKPQASLSAWERKTGSARTGSSSFVMCFTTADEAQRAIRERQFERWGDRRIQLVPYK 263
The following BLAST results are available for this feature:
BLAST of NO09G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27514.12.300e-6554.75hypothetical protein Naga_100101g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02850NO09G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02850.1NO09G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02850.1.cds1NO09G02850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02850.1 ID=NO09G02850.1|Name=NO09G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp
GTGATGAATGAATGGGAGAGATGGGGTGGAGTGAGTCTTAAACGTACAAC
ACATGCAAATTCGTCGCCACGCGATAGTGACAGTGGGCATATAAGTAGAA
AAAGAGGTGGAAATGTAGCTTTATCGAGGGTCCTTTGAAGACACATCTCC
CGCCTTGTTCCTCCCCCAGCCCCAGCCATCTTTCTTGAGTATCTAACTCA
CTCACACATCCAACACAAGAACACCACGCAACCCATAGCCCTCTACTATG
TCCGCTTCCTCGCATTTCTGGGGTGGCAGCCGCCTGCTCCAAGGCCTGGT
CCGGAGAAGAAGTAGCGGTCCCGGCACCACAGGCCAAAACCTCCTCCCCT
TTGCTCCATGCTTCACGAATAGCACAACGTCGACCGCCGCTTCTTTTTCC
TCCGCCACTGCAGCAGCCACCGCTAGCACACCTCCCAGCAGTATTAAGAG
TGAGCTTGGGCGCGTGGTGAAGCTGTCGTCCAATTCTCGGCTTGCAAATA
GGGACGACATAAAGGCCGCCGTGACGACGGCGTTGGAAGGAGGGCAAGTC
AAGACCTTGGACCCAATCCTCTTCAAGGGTGTCTACCCTAGTAATGCCTG
GTTAGTAGAGCTGTCCTCTCGTGAGGCAGCACATCGGCTGGTGCGATTTG
GTCAGATTCATGCGGCAGGCGGGGTGATGAAGGTGGAGGAGCTGAGGGAG
GAAGAGGCAGCGCGACTTCAAGTGGCATCGGAGTTAGGATTGGACGATTG
CTGCATTCAGTTACAGCACGTCCCGTTAGGCATGGGCATTGATGAGGTGG
CTTATTTCTTCCGAAATTTTCAATTGTCTCCGAAGGGGATTCGGCAGGTA
GAGACGACCATGCGACAGCCAAGCGTGGCGTGGTACAAGAAGACGGGCGG
GGGACGAATGGGCTCGTCTGTGTTCTTGGTACGGTTCGCCACAGCGGACG
AGGCACAACGTGCTATTCGAGAACGGCAGTTTGAGAAGTGGGGGGATAGG
AGGATACAGATTATTCCGTACAAGTAAAATAAAGATGAAAGAGTCGGAGG
AAGTGTGGACTACAGTGAGGGAGGTGGAGGAGGGGAATGAATGTGGAATC
AACTTGGGCACGTCTGTGAAAAAAAAGCTAGCACCATCAGGAAGATAAAA
AACAAGGAACATTACG
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protein sequence of NO09G02850.1

>NO09G02850.1-protein ID=NO09G02850.1-protein|Name=NO09G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSASSHFWGGSRLLQGLVRRRSSGPGTTGQNLLPFAPCFTNSTTSTAASF
SSATAAATASTPPSSIKSELGRVVKLSSNSRLANRDDIKAAVTTALEGGQ
VKTLDPILFKGVYPSNAWLVELSSREAAHRLVRFGQIHAAGGVMKVEELR
EEEAARLQVASELGLDDCCIQLQHVPLGMGIDEVAYFFRNFQLSPKGIRQ
VETTMRQPSVAWYKKTGGGRMGSSVFLVRFATADEAQRAIRERQFEKWGD
RRIQIIPYK*
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mRNA from alignment at chr9:841730..842895+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02850.1 ID=NO09G02850.1|Name=NO09G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp|location=Sequence derived from alignment at chr9:841730..842895+ (Nannochloropsis oceanica)
GTGATGAATGAATGGGAGAGATGGGGTGGAGTGAGTCTTAAACGTACAAC
ACATGCAAATTCGTCGCCACGCGATAGTGACAGTGGGCATATAAGTAGAA
AAAGAGGTGGAAATGTAGCTTTATCGAGGGTCCTTTGAAGACACATCTCC
CGCCTTGTTCCTCCCCCAGCCCCAGCCATCTTTCTTGAGTATCTAACTCA
CTCACACATCCAACACAAGAACACCACGCAACCCATAGCCCTCTACTATG
TCCGCTTCCTCGCATTTCTGGGGTGGCAGCCGCCTGCTCCAAGGCCTGGT
CCGGAGAAGAAGTAGCGGTCCCGGCACCACAGGCCAAAACCTCCTCCCCT
TTGCTCCATGCTTCACGAATAGCACAACGTCGACCGCCGCTTCTTTTTCC
TCCGCCACTGCAGCAGCCACCGCTAGCACACCTCCCAGCAGTATTAAGAG
TGAGCTTGGGCGCGTGGTGAAGCTGTCGTCCAATTCTCGGCTTGCAAATA
GGGACGACATAAAGGCCGCCGTGACGACGGCGTTGGAAGGAGGGCAAGTC
AAGACCTTGGACCCAATCCTCTTCAAGGGTGTCTACCCTAGTAATGCCTG
GTTAGTAGAGCTGTCCTCTCGTGAGGCAGCACATCGGCTGGTGCGATTTG
GTCAGATTCATGCGGCAGGCGGGGTGATGAAGGTGGAGGAGCTGAGGGAG
GAAGAGGCAGCGCGACTTCAAGTGGCATCGGAGTTAGGATTGGACGATTG
CTGCATTCAGTTACAGCACGTCCCGTTAGGCATGGGCATTGATGAGGTGG
CTTATTTCTTCCGAAATTTTCAATTGTCTCCGAAGGGGATTCGGCAGGTA
GAGACGACCATGCGACAGCCAAGCGTGGCGTGGTACAAGAAGACGGGCGG
GGGACGAATGGGCTCGTCTGTGTTCTTGGTACGGTTCGCCACAGCGGACG
AGGCACAACGTGCTATTCGAGAACGGCAGTTTGAGAAGTGGGGGGATAGG
AGGATACAGATTATTCCGTACAAGTAAAATAAAGATGAAAGAGTCGGAGG
AAGTGTGGACTACAGTGAGGGAGGTGGAGGAGGGGAATGAATGTGGAATC
AACTTGGGCACGTCTGTGAAAAAAAAGCTAGCACCATCAGGAAGATAAAA
AACAAGGAACATTACG
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Coding sequence (CDS) from alignment at chr9:841730..842895+

>NO09G02850.1 ID=NO09G02850.1|Name=NO09G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr9:841730..842895+ (Nannochloropsis oceanica)
ATGTCCGCTTCCTCGCATTTCTGGGGTGGCAGCCGCCTGCTCCAAGGCCT
GGTCCGGAGAAGAAGTAGCGGTCCCGGCACCACAGGCCAAAACCTCCTCC
CCTTTGCTCCATGCTTCACGAATAGCACAACGTCGACCGCCGCTTCTTTT
TCCTCCGCCACTGCAGCAGCCACCGCTAGCACACCTCCCAGCAGTATTAA
GAGTGAGCTTGGGCGCGTGGTGAAGCTGTCGTCCAATTCTCGGCTTGCAA
ATAGGGACGACATAAAGGCCGCCGTGACGACGGCGTTGGAAGGAGGGCAA
GTCAAGACCTTGGACCCAATCCTCTTCAAGGGTGTCTACCCTAGTAATGC
CTGGTTAGTAGAGCTGTCCTCTCGTGAGGCAGCACATCGGCTGGTGCGAT
TTGGTCAGATTCATGCGGCAGGCGGGGTGATGAAGGTGGAGGAGCTGAGG
GAGGAAGAGGCAGCGCGACTTCAAGTGGCATCGGAGTTAGGATTGGACGA
TTGCTGCATTCAGTTACAGCACGTCCCGTTAGGCATGGGCATTGATGAGG
TGGCTTATTTCTTCCGAAATTTTCAATTGTCTCCGAAGGGGATTCGGCAG
GTAGAGACGACCATGCGACAGCCAAGCGTGGCGTGGTACAAGAAGACGGG
CGGGGGACGAATGGGCTCGTCTGTGTTCTTGGTACGGTTCGCCACAGCGG
ACGAGGCACAACGTGCTATTCGAGAACGGCAGTTTGAGAAGTGGGGGGAT
AGGAGGATACAGATTATTCCGTACAAGTAA
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Synonyms
Publications