NO09G02810, NO09G02810 (gene) Nannochloropsis oceanica

Overview
NameNO09G02810
Unique NameNO09G02810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1821
Alignment locationchr9:831085..832905 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription factor IIS
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:831085..832905 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G02810 vs. NCBI_GenBank
Match: EWM27511.1 (Transcription factor IIS [Nannochloropsis gaditana])

HSP 1 Score: 285.0 bits (728), Expect = 4.400e-73
Identity = 193/498 (38.76%), Postives = 260/498 (52.21%), Query Frame = 0 
Query:   18 EQDDEAR-----SYQPLGLLDTCVKTLARHLEVFAYSRNRYRIIPIDLFLRILRNCHSHAWVQAADTMLRVVQIMPCLDVPEVDELYWRTVCELTLSPTTPITMPYKILLSRVMELKKALEEWIAASITRKVALVAAEEKHKGQRNDELRTGESVTTGRKGRGGKGSYCVTKEEIKGEKDTLQAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSSSKMETKSMRDGPPRNSES----NMWNSSRGRSGSTSSRSSTAKIPTKQQHQNEDQANAAVLHLLRDLRHIPMSRQLLTDAWGVGDAVRML-------------GGRAGGDVVVSEEVIQAAIKLRRQWKALIHQEEREAXXXXXXXXXXXXXXXXXXXMSPARVGARALEAHSWRHVYIFSLEYEKHRREWIGKRALALAEDHESKKRRTRGVEEMLGDAVTIEAEARKGKPPPGNTEKIRKLIKYKPTMQVKNGKRPLGGLTFVPPQKKKLLKVVK 494
            EQ +EA       ++P GL ++CVKT+ RH +V    R R  +IP+DLF++ILR C S AWV  ADTML VV+ +PCL VPEVDE++W+T+CE TLSPTTPI +PY  L+  V+     L  + A +           E + G   D L                      KEE+ G+   ++  S                                 SS +  T  + +   RN ES       N  +  S   SS S+T ++P  QQ ++ D  +AA L +L++LR IP+S QLL DA GV   V  +             GG + G+    EEV+QAA +LRR+WKA++ +E R                     M    +GARA+   +W  VYIF+ EYE +R++ IGKRALALA +H+SKKRR + +EE LGDA  IE E  KGKP  GNTE+IRKLIKY+PTM V   ++  GGL FVPP+KKK  KV+K
Sbjct:   10 EQPEEATLHPQPCHEPAGLRESCVKTITRHFDVLTLQRYRNWVIPVDLFMQILRGCQSIAWVNLADTMLGVVKNLPCLQVPEVDEVFWKTICEATLSPTTPIAVPYSSLVHNVVRHTVFLRNYSATA-----------EMNGGVPGDAL----------------------KEEVCGQMAHMKTASFQGQACGQTQKNGDTTCLPVNKKGKITKLEGHISSGEGLTGRLHERNIRNDESLDIEGQRNGHKTSSEGGSSCSATTRMPRMQQ-KDGDGDHAAALRVLQELRDIPVSVQLLKDANGVCQVVNQVSKLVPSAKGDKGAGGGSVGEGQAMEEVVQAARRLRRKWKAVVREESR---------TDSKGVRGEKAFMGSVELGARAVSVQTWMDVYIFAREYEMYRQQCIGKRALALAHEHDSKKRRMQNIEEKLGDAAAIEKEIWKGKPAVGNTERIRKLIKYRPTMSVAVAQKAFGGLKFVPPKKKKHFKVLK 464
The following BLAST results are available for this feature:
BLAST of NO09G02810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27511.14.400e-7338.76Transcription factor IIS [Nannochloropsis gaditana... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR022ncniR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010809NSK010809Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02810.1NO09G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100101g10gene3040Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02810.1NO09G02810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02810 ID=NO09G02810|Name=NO09G02810|organism=Nannochloropsis oceanica|type=gene|length=1821bp
AACACACAGGACTGTCAAGCAAACTATGTCAACGGTCGAAACCCAGCCGC
TGCTTGCGCTGACGAAGGAGAAGGATGAACAGGATGACGAGGCGCGAAGT
TACCAACCCTTGGGACTGCTGGACACTTGCGTGAAGACTCTGGCACGGCA
CTTGGAAGTCTTTGCATACAGTCGTAACCGGTACCGCATCATCCCCATTG
ATCTCTTCCTCCGCATCTTGCGGAACTGCCATTCGCACGCTTGGGTGCAG
GCCGCCGACACCATGCTCAGAGTAGTTCAAATCATGCCGTGCCTCGACGT
TCCCGAGGTGGATGAACTGTACTGGCGGACAGTCTGTGAATTGACCCTCA
GTCCAACCACGCCAATTACCATGCCATATAAAATTCTTCTCAGCCGGGTT
ATGGAGCTGAAGAAGGCCTTGGAAGAGTGGATAGCGGCGTCGATTACTCG
GAAGGTGGCACTAGTGGCGGCAGAGGAGAAGCACAAAGGTCAACGGAACG
ATGAGCTTAGAACTGGAGAGAGCGTTACGACAGGTAGGAAGGGGAGGGGG
GGAAAGGGGAGTTATTGCGTGACCAAGGAGGAGATAAAGGGAGAGAAGGA
CACGCTTCAAGCTAAGAGCAGCAAGAAGGACAAAAGCAGCTACAGACGCA
CCAATGAGGAAGACAATGAGAGAAAGGAGAAAAGGGAGAACAAGGATAGC
AGCACGACTGGTGTTAACTCCAGCTCCAAAATGGAAACGAAGAGCATGAG
AGATGGGCCACCAAGGAATTCCGAGAGCAACATGTGGAATAGCAGCAGGG
GGAGGAGCGGCAGCACCAGCAGCCGCAGCAGCACGGCGAAGATACCGACA
AAGCAACAGCATCAGAATGAGGATCAGGCAAACGCAGCAGTTCTTCATTT
GTTGCGGGATTTGAGACATATACCGATGTCAAGGCAGCTTTTGACGGACG
CGTGGGGGGTGGGGGATGCCGTGCGGATGCTTGGGGGAAGGGCGGGCGGT
GACGTGGTGGTGTCGGAAGAGGTGATACAGGCGGCGATCAAACTTCGGCG
ACAGTGGAAGGCATTGATACATCAAGAAGAAAGAGAGGCAAGGGAAAAGG
AAGAGGAGAAGGGTGATGACAAGGAAGGGGAGAGGAGCGACGACCCCATG
AGCCCGGCCCGAGTGGGAGCGCGGGCATTGGAAGCACACTCTTGGAGGCA
TGTGTACATATTCTCGCTCGAGTACGAAAAACACCGAAGAGAGTGGATTG
GGAAGCGAGCTTTGGCCTTGGCGGAAGACCACGAGTCGAAGAAGCGGCGG
ACGAGGGGGGTTGAAGAGATGCTGGGAGATGCGGTGACGATCGAGGCGGA
AGCGAGGAAGGGGAAGCCTCCTCCAGGTAACACTGAAAAAATTCGGAAGC
TGATAAAGTACAAACCGACTATGCAGGTGAAGAATGGGAAAAGGCCACTC
GGAGGACTTACATTTGTGCCGCCTCAGAAAAAGAAGCTTTTGAAGGTGGT
GAAGTTGGGGTAGCATGAGTGGGTGGGGGGTGGATGGCAAGGTGATTAAA
TAGTCGGAATGTTTGCAAATTGATTGATTGTGTGTGTATATATGTAAAAG
TGTGAGTGTGAGTGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATGGTTAAAGATTGAAATAGGTTCCA
CTCATTTTCTCCTTGTAGTTGCTAGAGCAAGGAGTGTAAGATAAATCAAA
GAACGGCGACCTCGCCAGAATAAAATCGAAGTATGTGCATAATATATAAA
TAATTCATGATTGTCGCGTGA
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protein sequence of NO09G02810.1

>NO09G02810.1-protein ID=NO09G02810.1-protein|Name=NO09G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MSTVETQPLLALTKEKDEQDDEARSYQPLGLLDTCVKTLARHLEVFAYSR
NRYRIIPIDLFLRILRNCHSHAWVQAADTMLRVVQIMPCLDVPEVDELYW
RTVCELTLSPTTPITMPYKILLSRVMELKKALEEWIAASITRKVALVAAE
EKHKGQRNDELRTGESVTTGRKGRGGKGSYCVTKEEIKGEKDTLQAKSSK
KDKSSYRRTNEEDNERKEKRENKDSSTTGVNSSSKMETKSMRDGPPRNSE
SNMWNSSRGRSGSTSSRSSTAKIPTKQQHQNEDQANAAVLHLLRDLRHIP
MSRQLLTDAWGVGDAVRMLGGRAGGDVVVSEEVIQAAIKLRRQWKALIHQ
EEREAREKEEEKGDDKEGERSDDPMSPARVGARALEAHSWRHVYIFSLEY
EKHRREWIGKRALALAEDHESKKRRTRGVEEMLGDAVTIEAEARKGKPPP
GNTEKIRKLIKYKPTMQVKNGKRPLGGLTFVPPQKKKLLKVVKLG*
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Synonyms
Publications