NO09G02810.1, NO09G02810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02810.1
Unique NameNO09G02810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1821
Alignment locationchr9:831085..832905 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:831085..832905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02810.1 vs.
Match: EWM27511.1 (Transcription factor IIS [Nannochloropsis gaditana])

HSP 1 Score: 280.4 bits (716), Expect = 1.100e-71
Identity = 199/499 (39.88%), Postives = 273/499 (54.71%), Query Frame = 0 
Query:   18 EQDDEAR-----SYQPLGLLDTCVKTLARHLEVFAYSRNRYRIIPIDLFLRILRNCHSHAWVQAADTMLRVVQIMPCLDVPEVDELYWRTVCELTLSPTTPITMPYKILLSRVMELKKALEEWIAASITRKVALVAAEEKHKGQRNDELRTGESVTTGRKGRGGKGSYCVTKEEIKGEKDTLQAKSSKKDKSSYRRTNEEDNERKEKRENKDSSTTGVNSSSKMETKSMRDGPPRNSES----NMWNSSRGRSGSTSSRSSTAKIPTKQQHQNEDQANAAVLHLLRDLRHIPMSRQLLTDAWGVGDAVRML-------------GGRAGGDVVVSEEVIQAAIKLRRQWKALIHQEEREAREKEEEKGDDKEGERSDDP-MSPARVGARALEAHSWRHVYIFSLEYEKHRREWIGKRALALAEDHESKKRRTRGVEEMLGDAVTIEAEARKGKPPPGNTEKIRKLIKYKPTMQVKNGKRPLGGLTFVPPQKKKLLKVVK 494
            EQ +EA       ++P GL ++CVKT+ RH +V    R R  +IP+DLF++ILR C S AWV  ADTML VV+ +PCL VPEVDE++W+T+CE TLSPTTPI +PY  L+  V+     L  + A             E + G   D L                      KEE+ G+   ++  S +       + N +       ++ K +   G  SS +  T  + +   RN ES       N  +  S   SS S+T ++P  QQ ++ D  +AA L +L++LR IP+S QLL DA GV   V  +             GG + G+    EEV+QAA +LRR+WKA++ +E R           D +G R +   M    +GARA+   +W  VYIF+ EYE +R++ IGKRALALA +H+SKKRR + +EE LGDA  IE E  KGKP  GNTE+IRKLIKY+PTM V   ++  GGL FVPP+KKK  KV+K
Sbjct:   10 EQPEEATLHPQPCHEPAGLRESCVKTITRHFDVLTLQRYRNWVIPVDLFMQILRGCQSIAWVNLADTMLGVVKNLPCLQVPEVDEVFWKTICEATLSPTTPIAVPYSSLVHNVVRHTVFLRNYSAT-----------AEMNGGVPGDAL----------------------KEEVCGQMAHMKTASFQGQACGQTQKNGDTTCLPVNKKGKITKLEGHISSGEGLTGRLHERNIRNDESLDIEGQRNGHKTSSEGGSSCSATTRMPRMQQ-KDGDGDHAAALRVLQELRDIPVSVQLLKDANGVCQVVNQVSKLVPSAKGDKGAGGGSVGEGQAMEEVVQAARRLRRKWKAVVREESR----------TDSKGVRGEKAFMGSVELGARAVSVQTWMDVYIFAREYEMYRQQCIGKRALALAHEHDSKKRRMQNIEEKLGDAAAIEKEIWKGKPAVGNTERIRKLIKYRPTMSVAVAQKAFGGLKFVPPKKKKHFKVLK 464
The following BLAST results are available for this feature:
BLAST of NO09G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27511.11.100e-7139.88Transcription factor IIS [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02810NO09G02810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02810.1NO09G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02810.1.cds1NO09G02810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02810.1 ID=NO09G02810.1|Name=NO09G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
AACACACAGGACTGTCAAGCAAACTATGTCAACGGTCGAAACCCAGCCGC
TGCTTGCGCTGACGAAGGAGAAGGATGAACAGGATGACGAGGCGCGAAGT
TACCAACCCTTGGGACTGCTGGACACTTGCGTGAAGACTCTGGCACGGCA
CTTGGAAGTCTTTGCATACAGTCGTAACCGGTACCGCATCATCCCCATTG
ATCTCTTCCTCCGCATCTTGCGGAACTGCCATTCGCACGCTTGGGTGCAG
GCCGCCGACACCATGCTCAGAGTAGTTCAAATCATGCCGTGCCTCGACGT
TCCCGAGGTGGATGAACTGTACTGGCGGACAGTCTGTGAATTGACCCTCA
GTCCAACCACGCCAATTACCATGCCATATAAAATTCTTCTCAGCCGGGTT
ATGGAGCTGAAGAAGGCCTTGGAAGAGTGGATAGCGGCGTCGATTACTCG
GAAGGTGGCACTAGTGGCGGCAGAGGAGAAGCACAAAGGTCAACGGAACG
ATGAGCTTAGAACTGGAGAGAGCGTTACGACAGGTAGGAAGGGGAGGGGG
GGAAAGGGGAGTTATTGCGTGACCAAGGAGGAGATAAAGGGAGAGAAGGA
CACGCTTCAAGCTAAGAGCAGCAAGAAGGACAAAAGCAGCTACAGACGCA
CCAATGAGGAAGACAATGAGAGAAAGGAGAAAAGGGAGAACAAGGATAGC
AGCACGACTGGTGTTAACTCCAGCTCCAAAATGGAAACGAAGAGCATGAG
AGATGGGCCACCAAGGAATTCCGAGAGCAACATGTGGAATAGCAGCAGGG
GGAGGAGCGGCAGCACCAGCAGCCGCAGCAGCACGGCGAAGATACCGACA
AAGCAACAGCATCAGAATGAGGATCAGGCAAACGCAGCAGTTCTTCATTT
GTTGCGGGATTTGAGACATATACCGATGTCAAGGCAGCTTTTGACGGACG
CGTGGGGGGTGGGGGATGCCGTGCGGATGCTTGGGGGAAGGGCGGGCGGT
GACGTGGTGGTGTCGGAAGAGGTGATACAGGCGGCGATCAAACTTCGGCG
ACAGTGGAAGGCATTGATACATCAAGAAGAAAGAGAGGCAAGGGAAAAGG
AAGAGGAGAAGGGTGATGACAAGGAAGGGGAGAGGAGCGACGACCCCATG
AGCCCGGCCCGAGTGGGAGCGCGGGCATTGGAAGCACACTCTTGGAGGCA
TGTGTACATATTCTCGCTCGAGTACGAAAAACACCGAAGAGAGTGGATTG
GGAAGCGAGCTTTGGCCTTGGCGGAAGACCACGAGTCGAAGAAGCGGCGG
ACGAGGGGGGTTGAAGAGATGCTGGGAGATGCGGTGACGATCGAGGCGGA
AGCGAGGAAGGGGAAGCCTCCTCCAGGTAACACTGAAAAAATTCGGAAGC
TGATAAAGTACAAACCGACTATGCAGGTGAAGAATGGGAAAAGGCCACTC
GGAGGACTTACATTTGTGCCGCCTCAGAAAAAGAAGCTTTTGAAGGTGGT
GAAGTTGGGGTAGCATGAGTGGGTGGGGGGTGGATGGCAAGGTGATTAAA
TAGTCGGAATGTTTGCAAATTGATTGATTGTGTGTGTATATATGTAAAAG
TGTGAGTGTGAGTGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATGGTTAAAGATTGAAATAGGTTCCA
CTCATTTTCTCCTTGTAGTTGCTAGAGCAAGGAGTGTAAGATAAATCAAA
GAACGGCGACCTCGCCAGAATAAAATCGAAGTATGTGCATAATATATAAA
TAATTCATGATTGTCGCGTGA
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protein sequence of NO09G02810.1

>NO09G02810.1-protein ID=NO09G02810.1-protein|Name=NO09G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MSTVETQPLLALTKEKDEQDDEARSYQPLGLLDTCVKTLARHLEVFAYSR
NRYRIIPIDLFLRILRNCHSHAWVQAADTMLRVVQIMPCLDVPEVDELYW
RTVCELTLSPTTPITMPYKILLSRVMELKKALEEWIAASITRKVALVAAE
EKHKGQRNDELRTGESVTTGRKGRGGKGSYCVTKEEIKGEKDTLQAKSSK
KDKSSYRRTNEEDNERKEKRENKDSSTTGVNSSSKMETKSMRDGPPRNSE
SNMWNSSRGRSGSTSSRSSTAKIPTKQQHQNEDQANAAVLHLLRDLRHIP
MSRQLLTDAWGVGDAVRMLGGRAGGDVVVSEEVIQAAIKLRRQWKALIHQ
EEREAREKEEEKGDDKEGERSDDPMSPARVGARALEAHSWRHVYIFSLEY
EKHRREWIGKRALALAEDHESKKRRTRGVEEMLGDAVTIEAEARKGKPPP
GNTEKIRKLIKYKPTMQVKNGKRPLGGLTFVPPQKKKLLKVVKLG*
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mRNA from alignment at chr9:831085..832905+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02810.1 ID=NO09G02810.1|Name=NO09G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp|location=Sequence derived from alignment at chr9:831085..832905+ (Nannochloropsis oceanica)
AACACACAGGACTGTCAAGCAAACTATGTCAACGGTCGAAACCCAGCCGC
TGCTTGCGCTGACGAAGGAGAAGGATGAACAGGATGACGAGGCGCGAAGT
TACCAACCCTTGGGACTGCTGGACACTTGCGTGAAGACTCTGGCACGGCA
CTTGGAAGTCTTTGCATACAGTCGTAACCGGTACCGCATCATCCCCATTG
ATCTCTTCCTCCGCATCTTGCGGAACTGCCATTCGCACGCTTGGGTGCAG
GCCGCCGACACCATGCTCAGAGTAGTTCAAATCATGCCGTGCCTCGACGT
TCCCGAGGTGGATGAACTGTACTGGCGGACAGTCTGTGAATTGACCCTCA
GTCCAACCACGCCAATTACCATGCCATATAAAATTCTTCTCAGCCGGGTT
ATGGAGCTGAAGAAGGCCTTGGAAGAGTGGATAGCGGCGTCGATTACTCG
GAAGGTGGCACTAGTGGCGGCAGAGGAGAAGCACAAAGGTCAACGGAACG
ATGAGCTTAGAACTGGAGAGAGCGTTACGACAGGTAGGAAGGGGAGGGGG
GGAAAGGGGAGTTATTGCGTGACCAAGGAGGAGATAAAGGGAGAGAAGGA
CACGCTTCAAGCTAAGAGCAGCAAGAAGGACAAAAGCAGCTACAGACGCA
CCAATGAGGAAGACAATGAGAGAAAGGAGAAAAGGGAGAACAAGGATAGC
AGCACGACTGGTGTTAACTCCAGCTCCAAAATGGAAACGAAGAGCATGAG
AGATGGGCCACCAAGGAATTCCGAGAGCAACATGTGGAATAGCAGCAGGG
GGAGGAGCGGCAGCACCAGCAGCCGCAGCAGCACGGCGAAGATACCGACA
AAGCAACAGCATCAGAATGAGGATCAGGCAAACGCAGCAGTTCTTCATTT
GTTGCGGGATTTGAGACATATACCGATGTCAAGGCAGCTTTTGACGGACG
CGTGGGGGGTGGGGGATGCCGTGCGGATGCTTGGGGGAAGGGCGGGCGGT
GACGTGGTGGTGTCGGAAGAGGTGATACAGGCGGCGATCAAACTTCGGCG
ACAGTGGAAGGCATTGATACATCAAGAAGAAAGAGAGGCAAGGGAAAAGG
AAGAGGAGAAGGGTGATGACAAGGAAGGGGAGAGGAGCGACGACCCCATG
AGCCCGGCCCGAGTGGGAGCGCGGGCATTGGAAGCACACTCTTGGAGGCA
TGTGTACATATTCTCGCTCGAGTACGAAAAACACCGAAGAGAGTGGATTG
GGAAGCGAGCTTTGGCCTTGGCGGAAGACCACGAGTCGAAGAAGCGGCGG
ACGAGGGGGGTTGAAGAGATGCTGGGAGATGCGGTGACGATCGAGGCGGA
AGCGAGGAAGGGGAAGCCTCCTCCAGGTAACACTGAAAAAATTCGGAAGC
TGATAAAGTACAAACCGACTATGCAGGTGAAGAATGGGAAAAGGCCACTC
GGAGGACTTACATTTGTGCCGCCTCAGAAAAAGAAGCTTTTGAAGGTGGT
GAAGTTGGGGTAGCATGAGTGGGTGGGGGGTGGATGGCAAGGTGATTAAA
TAGTCGGAATGTTTGCAAATTGATTGATTGTGTGTGTATATATGTAAAAG
TGTGAGTGTGAGTGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATGGTTAAAGATTGAAATAGGTTCCA
CTCATTTTCTCCTTGTAGTTGCTAGAGCAAGGAGTGTAAGATAAATCAAA
GAACGGCGACCTCGCCAGAATAAAATCGAAGTATGTGCATAATATATAAA
TAATTCATGATTGTCGCGTGA
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Coding sequence (CDS) from alignment at chr9:831085..832905+

>NO09G02810.1 ID=NO09G02810.1|Name=NO09G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr9:831085..832905+ (Nannochloropsis oceanica)
ATGTCAACGGTCGAAACCCAGCCGCTGCTTGCGCTGACGAAGGAGAAGGA
TGAACAGGATGACGAGGCGCGAAGTTACCAACCCTTGGGACTGCTGGACA
CTTGCGTGAAGACTCTGGCACGGCACTTGGAAGTCTTTGCATACAGTCGT
AACCGGTACCGCATCATCCCCATTGATCTCTTCCTCCGCATCTTGCGGAA
CTGCCATTCGCACGCTTGGGTGCAGGCCGCCGACACCATGCTCAGAGTAG
TTCAAATCATGCCGTGCCTCGACGTTCCCGAGGTGGATGAACTGTACTGG
CGGACAGTCTGTGAATTGACCCTCAGTCCAACCACGCCAATTACCATGCC
ATATAAAATTCTTCTCAGCCGGGTTATGGAGCTGAAGAAGGCCTTGGAAG
AGTGGATAGCGGCGTCGATTACTCGGAAGGTGGCACTAGTGGCGGCAGAG
GAGAAGCACAAAGGTCAACGGAACGATGAGCTTAGAACTGGAGAGAGCGT
TACGACAGGTAGGAAGGGGAGGGGGGGAAAGGGGAGTTATTGCGTGACCA
AGGAGGAGATAAAGGGAGAGAAGGACACGCTTCAAGCTAAGAGCAGCAAG
AAGGACAAAAGCAGCTACAGACGCACCAATGAGGAAGACAATGAGAGAAA
GGAGAAAAGGGAGAACAAGGATAGCAGCACGACTGGTGTTAACTCCAGCT
CCAAAATGGAAACGAAGAGCATGAGAGATGGGCCACCAAGGAATTCCGAG
AGCAACATGTGGAATAGCAGCAGGGGGAGGAGCGGCAGCACCAGCAGCCG
CAGCAGCACGGCGAAGATACCGACAAAGCAACAGCATCAGAATGAGGATC
AGGCAAACGCAGCAGTTCTTCATTTGTTGCGGGATTTGAGACATATACCG
ATGTCAAGGCAGCTTTTGACGGACGCGTGGGGGGTGGGGGATGCCGTGCG
GATGCTTGGGGGAAGGGCGGGCGGTGACGTGGTGGTGTCGGAAGAGGTGA
TACAGGCGGCGATCAAACTTCGGCGACAGTGGAAGGCATTGATACATCAA
GAAGAAAGAGAGGCAAGGGAAAAGGAAGAGGAGAAGGGTGATGACAAGGA
AGGGGAGAGGAGCGACGACCCCATGAGCCCGGCCCGAGTGGGAGCGCGGG
CATTGGAAGCACACTCTTGGAGGCATGTGTACATATTCTCGCTCGAGTAC
GAAAAACACCGAAGAGAGTGGATTGGGAAGCGAGCTTTGGCCTTGGCGGA
AGACCACGAGTCGAAGAAGCGGCGGACGAGGGGGGTTGAAGAGATGCTGG
GAGATGCGGTGACGATCGAGGCGGAAGCGAGGAAGGGGAAGCCTCCTCCA
GGTAACACTGAAAAAATTCGGAAGCTGATAAAGTACAAACCGACTATGCA
GGTGAAGAATGGGAAAAGGCCACTCGGAGGACTTACATTTGTGCCGCCTC
AGAAAAAGAAGCTTTTGAAGGTGGTGAAGTTGGGGTAG
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Synonyms
Publications