NO09G02790, NO09G02790 (gene) Nannochloropsis oceanica

Overview
NameNO09G02790
Unique NameNO09G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2292
Alignment locationchr9:825906..828197 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:825906..828197 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO09G02790 vs. NCBI_GenBank
Match: EWM27516.1 (hypothetical protein Naga_100101g13 [Nannochloropsis gaditana])

HSP 1 Score: 565.5 bits (1456), Expect = 2.600e-157
Identity = 336/788 (42.64%), Postives = 456/788 (57.87%), Query Frame = 0
Query:    1 MAPRSVVLTT-RVILAVLFMNAFIVGTLHYRHTVQHEDGTPVLYNTLSADELPPG------VANLRGT-RTSTLQDDSKQLRQNDFTADRGPRTRRYLVVIPLIGLKVDDRASHESERLTLKAWDALANHISSLRDEEHEIELRVVGMVENTAHCDSRLFGPSADLLSSGAASCVTLDLSCGHPDFDGVLTMDCILNMSLEIGEVWEADVYILANGDVVFTPTLTEAIDFALDTFGDGKSLATSPPHFPITASLSMREVEKSVTEAKKKIEPPPVSSTXXXXXXFSTLSTSLPTQPSHGFVMVGRRMDLSVALPKNTDDPPLTEDDLLHSDIKVRLHPATGIDYFAFTPNIIPRTFPPYLVGRWRWDNALLIHFLSSNAASIDASEVVHALHIGMGSFDSASHAARPGGQYNDDIATNMTGSRLTLGRIDFTKYILKQREMTEEEKEEAKRQQHRLSLEVERRSQPLGEAQLAALRVTDKSSFADDNSGDQQRQQ--QTKVKGGKTVFLLPVQAGEKALALEWVRWARGMKIDNYLLLAADRSEALALECILATNXXXXXXXXXXXSRGGEVVWMDPGKLRLRGWDGSKAYFEQKTSGRASPAVLALATGQLIERLLRLDLAVVLLPSLLPS----------------TSLMSSSVQALLRKENDVFQKDGRVMTALVASLLSIRDEEACDVTLWEEGQVKIDKINAAQTTAHGIQETVFSDENEQRPLPFAYALFQPTSTVLKGWEVVLSCLEEDVRHTKSQQGLCLTKVISAACRESIPSAAAPSY 763
            MA  S++++T   +  +L ++AF+ G   Y +  +HE G P ++++  A E+ P       + +LRG      +       R+     +   + RR+L  IPL+GLK DD  S ESERL L+AW+ALANH+  + +    +ELRVVGMVE+ ++CD RLFGPSA L SS A SC+TL  SC         T+DCI  ++  +G+ + A+VYILANGDVVFTPT TEAI FAL+TFG+G      PP         +RE E+ V  + +    PP S++            S       GFV+VGRR+D++V++PK  DDPPLT +DLL  D+ VRLHP TGIDYFAFT N++PR+FPP+L+GRWRWDN LL+HFL S  ASIDA+EVVHALHIGM  FDSA HA R G  YND +A +  GS   LGR DFT Y+LK   M EEE E A    H L+L +ERRS PL   QLA LRV  +  FA  N+  ++R    Q     GKT+FLLPV AGE A A+EW  WA  M + NYL +AA R+++ A+E  LA              +GGEV+ MDP +L + GW GSK YF QK SG AS AVL   TG L++RLLRL L+VVL+P+L                    S    +  A ++ +    +  GR    ++ S++   D+ ACDV LWEE        +    + H   +   S E   +   F YA  + +S ++K W+ V +CL EDVR +KS++G C  + +  +C   +P+ +  +Y
Sbjct:    1 MALNSILVSTLGAVSVILVLSAFVTGGTFYNYIARHEQGIPEMFDS-KASEVSPSYSTLSRLPSLRGRYAVDKMAGSGSAPRRQPAKTENTSQVRRFLAFIPLLGLKNDDWGSRESERLVLEAWNALANHVRLMNE---SVELRVVGMVEDASYCDPRLFGPSASLASS-AVSCLTLGPSCNQSGQKSAPTLDCIFEVATRVGDAYGANVYILANGDVVFTPTFTEAIAFALNTFGNG------PP---------VREGEEGVAPSPRLTLQPPASASGASGFPPPCAEAS----QHEGFVLVGRRLDMNVSIPKVPDDPPLTAEDLLAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSKGASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAHKLGRSDFTTYVLKDGGMPEEEDEVA---PHHLALRLERRSHPLIHGQLAGLRVAAR-GFAFPNASHEERNAHVQADENSGKTIFLLPVPAGEVASAMEWACWAGDMGLTNYLFVAASRNDSCAIEAALAV--------INKGRKGGEVLHMDPSQLTIAGWGGSKPYFNQKKSGIASRAVLDYGTGALMQRLLRLGLSVVLVPTLXXXXXXXXXXXXXXXXXXLPSFWGKNADAKMKGD----EGTGRTSQEVIQSVMQASDDAACDVILWEETHTSAPG-HTDTLSKHTYTKESSSKEKADKRANFLYARVEASSQIMKNWDTVFNCLTEDVRSSKSKRGWCFAE-LKTSCHHVVPAVSVSNY 746          
BLAST of NO09G02790 vs. NCBI_GenBank
Match: XP_009492643.1 (hypothetical protein H696_00498 [Fonticula alba] >KCV72935.1 hypothetical protein H696_00498 [Fonticula alba])

HSP 1 Score: 69.3 bits (168), Expect = 5.800e-8
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = 0
Query:  294 MVGRRMDLSVALPKNTDDPPLTEDDLLHSDIKVRLHPATGIDYFAFTPNIIPRTFPPYLVGRWRWDNALLIHFL-SSNAASIDASEVVHALHIGMGSFDSASHAARPGGQYNDDIATNMTGSRLTLGRIDFTKYIL 429
            MVG+R+D+      + ++P   ED     +   + H   GIDYF +      R  PP++VGR RWDN LL  F+ + NAA++DA+EVV A+H+        SH +R G  YN ++  +       LG ++   Y L
Sbjct:    1 MVGQRIDILYPRLIDFNNPMWREDFKRTVERYGKTHGKYGIDYFLYRTR-YARPMPPFIVGRVRWDNWLLAQFIGNQNAAAVDATEVVFAVHLNHMKV-GGSH-SRSGTDYNINLTKSDAVDPKKLGDVESCDYYL 133          
BLAST of NO09G02790 vs. NCBI_GenBank
Match: XP_009492639.1 (hypothetical protein, variant 4 [Fonticula alba] >KCV72939.1 hypothetical protein, variant 4 [Fonticula alba])

HSP 1 Score: 69.3 bits (168), Expect = 5.800e-8
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = 0
Query:  294 MVGRRMDLSVALPKNTDDPPLTEDDLLHSDIKVRLHPATGIDYFAFTPNIIPRTFPPYLVGRWRWDNALLIHFL-SSNAASIDASEVVHALHIGMGSFDSASHAARPGGQYNDDIATNMTGSRLTLGRIDFTKYIL 429
            MVG+R+D+      + ++P   ED     +   + H   GIDYF +      R  PP++VGR RWDN LL  F+ + NAA++DA+EVV A+H+        SH +R G  YN ++  +       LG ++   Y L
Sbjct:    1 MVGQRIDILYPRLIDFNNPMWREDFKRTVERYGKTHGKYGIDYFLYRTR-YARPMPPFIVGRVRWDNWLLAQFIGNQNAAAVDATEVVFAVHLNHMKV-GGSH-SRSGTDYNINLTKSDAVDPKKLGDVESCDYYL 133          
BLAST of NO09G02790 vs. NCBI_GenBank
Match: OGO00879.1 (hypothetical protein A2Y90_02810 [Chloroflexi bacterium RBG_13_52_12])

HSP 1 Score: 65.5 bits (158), Expect = 8.400e-7
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 0
Query:  292 FVMVGRRMDLSVALPKNTDDPPLTEDDLLHSDIKVRLHPATGIDYFAFTPNIIPRTFPPYLVGRWRWDNALLIHFLSSNAASIDASEVVHALH 385
            F++VGRR D+ +  P + + P    +  +    + +LHP +GIDYF F P  + R  PP+ VGR  WDN L+          IDA+ V+ A+H
Sbjct:  110 FLIVGRRWDIDIKEPLDFNKPDWESNLRVRVTGEGKLHPPSGIDYFTF-PRGLYRDIPPFAVGRTAWDNWLIYRARVMKLPVIDATRVITAIH 201          
The following BLAST results are available for this feature:
BLAST of NO09G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM27516.12.600e-15742.64hypothetical protein Naga_100101g13 [Nannochlorops... [more]
XP_009492643.15.800e-834.56hypothetical protein H696_00498 [Fonticula alba] >... [more]
XP_009492639.15.800e-834.56hypothetical protein, variant 4 [Fonticula alba] >... [more]
OGO00879.18.400e-736.56hypothetical protein A2Y90_02810 [Chloroflexi bact... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR022ncniR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010804NSK010804Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02790.1NO09G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630158gene_4269Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02790.1NO09G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02790 ID=NO09G02790|Name=NO09G02790|organism=Nannochloropsis oceanica|type=gene|length=2292bp
ATGGCGCCACGCTCTGTCGTGCTGACCACGAGAGTGATCTTGGCTGTCCT
CTTTATGAACGCATTCATTGTGGGCACTCTTCACTATCGCCACACGGTCC
AGCACGAGGACGGTACCCCGGTTCTTTACAATACCCTGTCCGCCGACGAA
TTACCGCCTGGTGTTGCTAACTTGCGGGGAACGAGGACAAGCACATTACA
GGACGATTCAAAGCAGTTGCGGCAGAACGACTTCACGGCCGACCGCGGCC
CGCGCACACGACGCTATTTGGTCGTTATCCCCTTGATAGGCCTGAAGGTT
GATGATAGGGCCAGCCATGAGTCGGAGCGCCTGACGCTTAAAGCCTGGGA
TGCCTTGGCCAACCATATATCGTCCCTAAGGGATGAAGAGCATGAAATTG
AGCTGCGGGTGGTGGGTATGGTGGAAAATACCGCGCATTGTGACTCACGC
CTCTTTGGTCCGTCGGCGGACCTCTTGTCGTCGGGCGCCGCCTCGTGCGT
GACTTTGGATTTGTCCTGCGGACACCCCGACTTTGATGGTGTTCTTACAA
TGGACTGCATCTTAAATATGTCACTTGAAATTGGCGAGGTCTGGGAGGCA
GACGTGTATATCCTGGCGAATGGTGATGTGGTCTTCACCCCTACTCTGAC
CGAGGCTATAGACTTTGCCTTGGACACGTTTGGGGACGGGAAATCATTAG
CAACATCACCACCACATTTTCCAATTACAGCATCGTTGTCTATGAGGGAG
GTCGAGAAAAGCGTGACTGAGGCGAAAAAGAAAATCGAACCGCCTCCGGT
ATCTTCAACCTCCTCCGCCACCTCTTCATTCTCCACTCTCTCGACATCTC
TCCCAACACAGCCCTCCCACGGCTTTGTCATGGTCGGGCGCCGGATGGAC
TTGAGCGTCGCGCTCCCCAAAAATACCGACGATCCTCCTTTAACCGAAGA
TGACTTGCTGCACAGCGACATCAAAGTACGGCTGCATCCAGCTACGGGCA
TCGACTACTTCGCCTTCACCCCCAACATCATTCCCCGCACATTCCCCCCC
TACCTCGTTGGCCGCTGGCGGTGGGACAACGCCTTACTTATTCACTTCCT
GTCATCAAATGCTGCGAGTATCGATGCCTCAGAGGTGGTGCACGCGCTGC
ACATTGGCATGGGCTCCTTCGATTCTGCCTCTCACGCCGCGCGGCCCGGA
GGGCAGTACAACGATGATATTGCCACCAACATGACAGGGTCTAGGCTTAC
TTTGGGACGGATCGATTTCACGAAGTATATTTTGAAGCAGCGAGAGATGA
CGGAGGAGGAGAAGGAGGAGGCCAAGAGGCAGCAGCATCGGTTGTCGTTG
GAGGTGGAACGAAGGTCGCAGCCCTTGGGAGAGGCGCAGCTGGCGGCGTT
GAGGGTGACGGATAAAAGCAGTTTTGCGGATGACAATAGTGGTGACCAAC
AGCGGCAGCAGCAAACGAAGGTGAAAGGAGGCAAAACGGTCTTCCTTCTT
CCCGTCCAAGCAGGTGAGAAGGCCCTCGCCCTCGAGTGGGTGCGCTGGGC
ACGAGGCATGAAGATAGACAATTATCTCCTCCTCGCAGCCGATAGATCTG
AGGCTTTGGCACTTGAGTGTATCCTTGCAACGAACACCACCAATACCAGC
AGCAGTAGCAGCACAGAAAGCAGAGGAGGAGAGGTGGTATGGATGGATCC
AGGGAAGCTGAGATTGCGTGGATGGGATGGAAGCAAGGCCTACTTTGAGC
AGAAAACGTCGGGCCGAGCCTCGCCGGCAGTGCTGGCACTTGCAACGGGT
CAATTGATTGAGCGACTGCTGCGATTGGATTTGGCCGTAGTGTTGCTTCC
GTCGCTCCTTCCCTCTACGTCTCTCATGTCCTCCTCGGTGCAGGCGCTAC
TACGGAAGGAAAACGACGTATTTCAGAAGGATGGACGGGTAATGACCGCG
TTGGTGGCATCCTTACTTTCTATTCGTGATGAGGAGGCATGCGATGTGAC
TTTGTGGGAGGAAGGACAGGTGAAGATAGACAAAATTAATGCAGCACAGA
CAACGGCGCATGGGATACAGGAGACTGTATTTTCAGACGAGAACGAGCAA
CGGCCCCTTCCATTCGCGTATGCTCTTTTTCAGCCCACAAGCACGGTTTT
GAAGGGATGGGAAGTGGTCTTGTCCTGTTTGGAGGAGGATGTCCGGCACA
CGAAAAGCCAGCAGGGATTGTGCTTGACTAAAGTAATCTCTGCCGCATGC
CGTGAATCGATTCCGTCAGCCGCAGCCCCCTCATATAGGTGA
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protein sequence of NO09G02790.1

>NO09G02790.1-protein ID=NO09G02790.1-protein|Name=NO09G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp
MAPRSVVLTTRVILAVLFMNAFIVGTLHYRHTVQHEDGTPVLYNTLSADE
LPPGVANLRGTRTSTLQDDSKQLRQNDFTADRGPRTRRYLVVIPLIGLKV
DDRASHESERLTLKAWDALANHISSLRDEEHEIELRVVGMVENTAHCDSR
LFGPSADLLSSGAASCVTLDLSCGHPDFDGVLTMDCILNMSLEIGEVWEA
DVYILANGDVVFTPTLTEAIDFALDTFGDGKSLATSPPHFPITASLSMRE
VEKSVTEAKKKIEPPPVSSTSSATSSFSTLSTSLPTQPSHGFVMVGRRMD
LSVALPKNTDDPPLTEDDLLHSDIKVRLHPATGIDYFAFTPNIIPRTFPP
YLVGRWRWDNALLIHFLSSNAASIDASEVVHALHIGMGSFDSASHAARPG
GQYNDDIATNMTGSRLTLGRIDFTKYILKQREMTEEEKEEAKRQQHRLSL
EVERRSQPLGEAQLAALRVTDKSSFADDNSGDQQRQQQTKVKGGKTVFLL
PVQAGEKALALEWVRWARGMKIDNYLLLAADRSEALALECILATNTTNTS
SSSSTESRGGEVVWMDPGKLRLRGWDGSKAYFEQKTSGRASPAVLALATG
QLIERLLRLDLAVVLLPSLLPSTSLMSSSVQALLRKENDVFQKDGRVMTA
LVASLLSIRDEEACDVTLWEEGQVKIDKINAAQTTAHGIQETVFSDENEQ
RPLPFAYALFQPTSTVLKGWEVVLSCLEEDVRHTKSQQGLCLTKVISAAC
RESIPSAAAPSYR*
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Synonyms
Publications