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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:825906..828197 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02790.1 vs.
Match: EWM27516.1 (hypothetical protein Naga_100101g13 [Nannochloropsis gaditana]) HSP 1 Score: 570.1 bits (1468), Expect = 1.000e-158 Identity = 344/784 (43.88%), Postives = 462/784 (58.93%), Query Frame = 0
Query: 1 MAPRSVVLTTR-VILAVLFMNAFIVGTLHYRHTVQHEDGTPVLYNTLSADELPPGVA------NLRGT-RTSTLQDDSKQLRQNDFTADRGPRTRRYLVVIPLIGLKVDDRASHESERLTLKAWDALANHISSLRDEEHEIELRVVGMVENTAHCDSRLFGPSADLLSSGAASCVTLDLSCGHPDFDGVLTMDCILNMSLEIGEVWEADVYILANGDVVFTPTLTEAIDFALDTFGDGKSLATSPPHFPITASLSMREVEKSVTEAKKKIEPPPVSSTSSATSSFSTLSTSLPTQPSHGFVMVGRRMDLSVALPKNTDDPPLTEDDLLHSDIKVRLHPATGIDYFAFTPNIIPRTFPPYLVGRWRWDNALLIHFLSSNAASIDASEVVHALHIGMGSFDSASHAARPGGQYNDDIATNMTGSRLTLGRIDFTKYILKQREMTEEEKEEAKRQQHRLSLEVERRSQPLGEAQLAALRVTDKSSFADDNSGDQQRQQ--QTKVKGGKTVFLLPVQAGEKALALEWVRWARGMKIDNYLLLAADRSEALALECILATNTTNTSSSSSTESRGGEVVWMDPGKLRLRGWDGSKAYFEQKTSGRASPAVLALATGQLIERLLRLDLAVVLLPSLL----PSTSLMSSS----VQALLRKENDVFQK----DGRVMTALVASLLSIRDEEACDVTLWEEGQVKIDKINAAQTTAHGIQETVFSDENEQRPLPFAYALFQPTSTVLKGWEVVLSCLEEDVRHTKSQQGLCLTKVISAACRESIPSAAAPSY 763
MA S++++T + +L ++AF+ G Y + +HE G P ++++ A E+ P + +LRG + R+ + + RR+L IPL+GLK DD S ESERL L+AW+ALANH+ + + +ELRVVGMVE+ ++CD RLFGPSA L SS A SC+TL SC T+DCI ++ +G+ + A+VYILANGDVVFTPT TEAI FAL+TFG+G PP +RE E+ V + + PP S+ S S F GFV+VGRR+D++V++PK DDPPLT +DLL D+ VRLHP TGIDYFAFT N++PR+FPP+L+GRWRWDN LL+HFL S ASIDA+EVVHALHIGM FDSA HA R G YND +A + GS LGR DFT Y+LK M EEE E A H L+L +ERRS PL QLA LRV + FA N+ ++R Q GKT+FLLPV AGE A A+EW WA M + NYL +AA R+++ A+E LA + +GGEV+ MDP +L + GW GSK YF QK SG AS AVL TG L++RLLRL L+VVL+P+L PS S S+S + + K D K GR ++ S++ D+ ACDV LWEE + + H + S E + F YA + +S ++K W+ V +CL EDVR +KS++G C + + +C +P+ + +Y
Sbjct: 1 MALNSILVSTLGAVSVILVLSAFVTGGTFYNYIARHEQGIPEMFDS-KASEVSPSYSTLSRLPSLRGRYAVDKMAGSGSAPRRQPAKTENTSQVRRFLAFIPLLGLKNDDWGSRESERLVLEAWNALANHVRLMNES---VELRVVGMVEDASYCDPRLFGPSASLASS-AVSCLTLGPSCNQSGQKSAPTLDCIFEVATRVGDAYGANVYILANGDVVFTPTFTEAIAFALNTFGNG------PP---------VREGEEGVAPSPRLTLQPPASA--SGASGFPPPCAE--ASQHEGFVLVGRRLDMNVSIPKVPDDPPLTAEDLLAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSKGASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAHKLGRSDFTTYVLKDGGMPEEEDEVAP---HHLALRLERRSHPLIHGQLAGLRVAARG-FAFPNASHEERNAHVQADENSGKTIFLLPVPAGEVASAMEWACWAGDMGLTNYLFVAASRNDSCAIEAALAV--------INKGRKGGEVLHMDPSQLTIAGWGGSKPYFNQKKSGIASRAVLDYGTGALMQRLLRLGLSVVLVPTLTPFPPPSRSASSASPHPHLPSFWGKNADAKMKGDEGTGRTSQEVIQSVMQASDDAACDVILWEETHTSAPG-HTDTLSKHTYTKESSSKEKADKRANFLYARVEASSQIMKNWDTVFNCLTEDVRSSKSKRGWCFAE-LKTSCHHVVPAVSVSNY 746
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02790.1 ID=NO09G02790.1|Name=NO09G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2292bp ATGGCGCCACGCTCTGTCGTGCTGACCACGAGAGTGATCTTGGCTGTCCT CTTTATGAACGCATTCATTGTGGGCACTCTTCACTATCGCCACACGGTCC AGCACGAGGACGGTACCCCGGTTCTTTACAATACCCTGTCCGCCGACGAA TTACCGCCTGGTGTTGCTAACTTGCGGGGAACGAGGACAAGCACATTACA GGACGATTCAAAGCAGTTGCGGCAGAACGACTTCACGGCCGACCGCGGCC CGCGCACACGACGCTATTTGGTCGTTATCCCCTTGATAGGCCTGAAGGTT GATGATAGGGCCAGCCATGAGTCGGAGCGCCTGACGCTTAAAGCCTGGGA TGCCTTGGCCAACCATATATCGTCCCTAAGGGATGAAGAGCATGAAATTG AGCTGCGGGTGGTGGGTATGGTGGAAAATACCGCGCATTGTGACTCACGC CTCTTTGGTCCGTCGGCGGACCTCTTGTCGTCGGGCGCCGCCTCGTGCGT GACTTTGGATTTGTCCTGCGGACACCCCGACTTTGATGGTGTTCTTACAA TGGACTGCATCTTAAATATGTCACTTGAAATTGGCGAGGTCTGGGAGGCA GACGTGTATATCCTGGCGAATGGTGATGTGGTCTTCACCCCTACTCTGAC CGAGGCTATAGACTTTGCCTTGGACACGTTTGGGGACGGGAAATCATTAG CAACATCACCACCACATTTTCCAATTACAGCATCGTTGTCTATGAGGGAG GTCGAGAAAAGCGTGACTGAGGCGAAAAAGAAAATCGAACCGCCTCCGGT ATCTTCAACCTCCTCCGCCACCTCTTCATTCTCCACTCTCTCGACATCTC TCCCAACACAGCCCTCCCACGGCTTTGTCATGGTCGGGCGCCGGATGGAC TTGAGCGTCGCGCTCCCCAAAAATACCGACGATCCTCCTTTAACCGAAGA TGACTTGCTGCACAGCGACATCAAAGTACGGCTGCATCCAGCTACGGGCA TCGACTACTTCGCCTTCACCCCCAACATCATTCCCCGCACATTCCCCCCC TACCTCGTTGGCCGCTGGCGGTGGGACAACGCCTTACTTATTCACTTCCT GTCATCAAATGCTGCGAGTATCGATGCCTCAGAGGTGGTGCACGCGCTGC ACATTGGCATGGGCTCCTTCGATTCTGCCTCTCACGCCGCGCGGCCCGGA GGGCAGTACAACGATGATATTGCCACCAACATGACAGGGTCTAGGCTTAC TTTGGGACGGATCGATTTCACGAAGTATATTTTGAAGCAGCGAGAGATGA CGGAGGAGGAGAAGGAGGAGGCCAAGAGGCAGCAGCATCGGTTGTCGTTG GAGGTGGAACGAAGGTCGCAGCCCTTGGGAGAGGCGCAGCTGGCGGCGTT GAGGGTGACGGATAAAAGCAGTTTTGCGGATGACAATAGTGGTGACCAAC AGCGGCAGCAGCAAACGAAGGTGAAAGGAGGCAAAACGGTCTTCCTTCTT CCCGTCCAAGCAGGTGAGAAGGCCCTCGCCCTCGAGTGGGTGCGCTGGGC ACGAGGCATGAAGATAGACAATTATCTCCTCCTCGCAGCCGATAGATCTG AGGCTTTGGCACTTGAGTGTATCCTTGCAACGAACACCACCAATACCAGC AGCAGTAGCAGCACAGAAAGCAGAGGAGGAGAGGTGGTATGGATGGATCC AGGGAAGCTGAGATTGCGTGGATGGGATGGAAGCAAGGCCTACTTTGAGC AGAAAACGTCGGGCCGAGCCTCGCCGGCAGTGCTGGCACTTGCAACGGGT CAATTGATTGAGCGACTGCTGCGATTGGATTTGGCCGTAGTGTTGCTTCC GTCGCTCCTTCCCTCTACGTCTCTCATGTCCTCCTCGGTGCAGGCGCTAC TACGGAAGGAAAACGACGTATTTCAGAAGGATGGACGGGTAATGACCGCG TTGGTGGCATCCTTACTTTCTATTCGTGATGAGGAGGCATGCGATGTGAC TTTGTGGGAGGAAGGACAGGTGAAGATAGACAAAATTAATGCAGCACAGA CAACGGCGCATGGGATACAGGAGACTGTATTTTCAGACGAGAACGAGCAA CGGCCCCTTCCATTCGCGTATGCTCTTTTTCAGCCCACAAGCACGGTTTT GAAGGGATGGGAAGTGGTCTTGTCCTGTTTGGAGGAGGATGTCCGGCACA CGAAAAGCCAGCAGGGATTGTGCTTGACTAAAGTAATCTCTGCCGCATGC CGTGAATCGATTCCGTCAGCCGCAGCCCCCTCATATAGGTGA back to topprotein sequence of NO09G02790.1 >NO09G02790.1-protein ID=NO09G02790.1-protein|Name=NO09G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp MAPRSVVLTTRVILAVLFMNAFIVGTLHYRHTVQHEDGTPVLYNTLSADE LPPGVANLRGTRTSTLQDDSKQLRQNDFTADRGPRTRRYLVVIPLIGLKV DDRASHESERLTLKAWDALANHISSLRDEEHEIELRVVGMVENTAHCDSR LFGPSADLLSSGAASCVTLDLSCGHPDFDGVLTMDCILNMSLEIGEVWEA DVYILANGDVVFTPTLTEAIDFALDTFGDGKSLATSPPHFPITASLSMRE VEKSVTEAKKKIEPPPVSSTSSATSSFSTLSTSLPTQPSHGFVMVGRRMD LSVALPKNTDDPPLTEDDLLHSDIKVRLHPATGIDYFAFTPNIIPRTFPP YLVGRWRWDNALLIHFLSSNAASIDASEVVHALHIGMGSFDSASHAARPG GQYNDDIATNMTGSRLTLGRIDFTKYILKQREMTEEEKEEAKRQQHRLSL EVERRSQPLGEAQLAALRVTDKSSFADDNSGDQQRQQQTKVKGGKTVFLL PVQAGEKALALEWVRWARGMKIDNYLLLAADRSEALALECILATNTTNTS SSSSTESRGGEVVWMDPGKLRLRGWDGSKAYFEQKTSGRASPAVLALATG QLIERLLRLDLAVVLLPSLLPSTSLMSSSVQALLRKENDVFQKDGRVMTA LVASLLSIRDEEACDVTLWEEGQVKIDKINAAQTTAHGIQETVFSDENEQ RPLPFAYALFQPTSTVLKGWEVVLSCLEEDVRHTKSQQGLCLTKVISAAC RESIPSAAAPSYR* back to topmRNA from alignment at chr9:825906..828197- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02790.1 ID=NO09G02790.1|Name=NO09G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2292bp|location=Sequence derived from alignment at chr9:825906..828197- (Nannochloropsis oceanica) ATGGCGCCACGCTCTGTCGTGCTGACCACGAGAGTGATCTTGGCTGTCCT
CTTTATGAACGCATTCATTGTGGGCACTCTTCACTATCGCCACACGGTCC
AGCACGAGGACGGTACCCCGGTTCTTTACAATACCCTGTCCGCCGACGAA
TTACCGCCTGGTGTTGCTAACTTGCGGGGAACGAGGACAAGCACATTACA
GGACGATTCAAAGCAGTTGCGGCAGAACGACTTCACGGCCGACCGCGGCC
CGCGCACACGACGCTATTTGGTCGTTATCCCCTTGATAGGCCTGAAGGTT
GATGATAGGGCCAGCCATGAGTCGGAGCGCCTGACGCTTAAAGCCTGGGA
TGCCTTGGCCAACCATATATCGTCCCTAAGGGATGAAGAGCATGAAATTG
AGCTGCGGGTGGTGGGTATGGTGGAAAATACCGCGCATTGTGACTCACGC
CTCTTTGGTCCGTCGGCGGACCTCTTGTCGTCGGGCGCCGCCTCGTGCGT
GACTTTGGATTTGTCCTGCGGACACCCCGACTTTGATGGTGTTCTTACAA
TGGACTGCATCTTAAATATGTCACTTGAAATTGGCGAGGTCTGGGAGGCA
GACGTGTATATCCTGGCGAATGGTGATGTGGTCTTCACCCCTACTCTGAC
CGAGGCTATAGACTTTGCCTTGGACACGTTTGGGGACGGGAAATCATTAG
CAACATCACCACCACATTTTCCAATTACAGCATCGTTGTCTATGAGGGAG
GTCGAGAAAAGCGTGACTGAGGCGAAAAAGAAAATCGAACCGCCTCCGGT
ATCTTCAACCTCCTCCGCCACCTCTTCATTCTCCACTCTCTCGACATCTC
TCCCAACACAGCCCTCCCACGGCTTTGTCATGGTCGGGCGCCGGATGGAC
TTGAGCGTCGCGCTCCCCAAAAATACCGACGATCCTCCTTTAACCGAAGA
TGACTTGCTGCACAGCGACATCAAAGTACGGCTGCATCCAGCTACGGGCA
TCGACTACTTCGCCTTCACCCCCAACATCATTCCCCGCACATTCCCCCCC
TACCTCGTTGGCCGCTGGCGGTGGGACAACGCCTTACTTATTCACTTCCT
GTCATCAAATGCTGCGAGTATCGATGCCTCAGAGGTGGTGCACGCGCTGC
ACATTGGCATGGGCTCCTTCGATTCTGCCTCTCACGCCGCGCGGCCCGGA
GGGCAGTACAACGATGATATTGCCACCAACATGACAGGGTCTAGGCTTAC
TTTGGGACGGATCGATTTCACGAAGTATATTTTGAAGCAGCGAGAGATGA
CGGAGGAGGAGAAGGAGGAGGCCAAGAGGCAGCAGCATCGGTTGTCGTTG
GAGGTGGAACGAAGGTCGCAGCCCTTGGGAGAGGCGCAGCTGGCGGCGTT
GAGGGTGACGGATAAAAGCAGTTTTGCGGATGACAATAGTGGTGACCAAC
AGCGGCAGCAGCAAACGAAGGTGAAAGGAGGCAAAACGGTCTTCCTTCTT
CCCGTCCAAGCAGGTGAGAAGGCCCTCGCCCTCGAGTGGGTGCGCTGGGC
ACGAGGCATGAAGATAGACAATTATCTCCTCCTCGCAGCCGATAGATCTG
AGGCTTTGGCACTTGAGTGTATCCTTGCAACGAACACCACCAATACCAGC
AGCAGTAGCAGCACAGAAAGCAGAGGAGGAGAGGTGGTATGGATGGATCC
AGGGAAGCTGAGATTGCGTGGATGGGATGGAAGCAAGGCCTACTTTGAGC
AGAAAACGTCGGGCCGAGCCTCGCCGGCAGTGCTGGCACTTGCAACGGGT
CAATTGATTGAGCGACTGCTGCGATTGGATTTGGCCGTAGTGTTGCTTCC
GTCGCTCCTTCCCTCTACGTCTCTCATGTCCTCCTCGGTGCAGGCGCTAC
TACGGAAGGAAAACGACGTATTTCAGAAGGATGGACGGGTAATGACCGCG
TTGGTGGCATCCTTACTTTCTATTCGTGATGAGGAGGCATGCGATGTGAC
TTTGTGGGAGGAAGGACAGGTGAAGATAGACAAAATTAATGCAGCACAGA
CAACGGCGCATGGGATACAGGAGACTGTATTTTCAGACGAGAACGAGCAA
CGGCCCCTTCCATTCGCGTATGCTCTTTTTCAGCCCACAAGCACGGTTTT
GAAGGGATGGGAAGTGGTCTTGTCCTGTTTGGAGGAGGATGTCCGGCACA
CGAAAAGCCAGCAGGGATTGTGCTTGACTAAAGTAATCTCTGCCGCATGC
CGTGAATCGATTCCGTCAGCCGCAGCCCCCTCATATAGGTGA back to topCoding sequence (CDS) from alignment at chr9:825906..828197- >NO09G02790.1 ID=NO09G02790.1|Name=NO09G02790.1|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at chr9:825906..828197- (Nannochloropsis oceanica) ATGGCGCCACGCTCTGTCGTGCTGACCACGAGAGTGATCTTGGCTGTCCT CTTTATGAACGCATTCATTGTGGGCACTCTTCACTATCGCCACACGGTCC AGCACGAGGACGGTACCCCGGTTCTTTACAATACCCTGTCCGCCGACGAA TTACCGCCTGGTGTTGCTAACTTGCGGGGAACGAGGACAAGCACATTACA GGACGATTCAAAGCAGTTGCGGCAGAACGACTTCACGGCCGACCGCGGCC CGCGCACACGACGCTATTTGGTCGTTATCCCCTTGATAGGCCTGAAGGTT GATGATAGGGCCAGCCATGAGTCGGAGCGCCTGACGCTTAAAGCCTGGGA TGCCTTGGCCAACCATATATCGTCCCTAAGGGATGAAGAGCATGAAATTG AGCTGCGGGTGGTGGGTATGGTGGAAAATACCGCGCATTGTGACTCACGC CTCTTTGGTCCGTCGGCGGACCTCTTGTCGTCGGGCGCCGCCTCGTGCGT GACTTTGGATTTGTCCTGCGGACACCCCGACTTTGATGGTGTTCTTACAA TGGACTGCATCTTAAATATGTCACTTGAAATTGGCGAGGTCTGGGAGGCA GACGTGTATATCCTGGCGAATGGTGATGTGGTCTTCACCCCTACTCTGAC CGAGGCTATAGACTTTGCCTTGGACACGTTTGGGGACGGGAAATCATTAG CAACATCACCACCACATTTTCCAATTACAGCATCGTTGTCTATGAGGGAG GTCGAGAAAAGCGTGACTGAGGCGAAAAAGAAAATCGAACCGCCTCCGGT ATCTTCAACCTCCTCCGCCACCTCTTCATTCTCCACTCTCTCGACATCTC TCCCAACACAGCCCTCCCACGGCTTTGTCATGGTCGGGCGCCGGATGGAC TTGAGCGTCGCGCTCCCCAAAAATACCGACGATCCTCCTTTAACCGAAGA TGACTTGCTGCACAGCGACATCAAAGTACGGCTGCATCCAGCTACGGGCA TCGACTACTTCGCCTTCACCCCCAACATCATTCCCCGCACATTCCCCCCC TACCTCGTTGGCCGCTGGCGGTGGGACAACGCCTTACTTATTCACTTCCT GTCATCAAATGCTGCGAGTATCGATGCCTCAGAGGTGGTGCACGCGCTGC ACATTGGCATGGGCTCCTTCGATTCTGCCTCTCACGCCGCGCGGCCCGGA GGGCAGTACAACGATGATATTGCCACCAACATGACAGGGTCTAGGCTTAC TTTGGGACGGATCGATTTCACGAAGTATATTTTGAAGCAGCGAGAGATGA CGGAGGAGGAGAAGGAGGAGGCCAAGAGGCAGCAGCATCGGTTGTCGTTG GAGGTGGAACGAAGGTCGCAGCCCTTGGGAGAGGCGCAGCTGGCGGCGTT GAGGGTGACGGATAAAAGCAGTTTTGCGGATGACAATAGTGGTGACCAAC AGCGGCAGCAGCAAACGAAGGTGAAAGGAGGCAAAACGGTCTTCCTTCTT CCCGTCCAAGCAGGTGAGAAGGCCCTCGCCCTCGAGTGGGTGCGCTGGGC ACGAGGCATGAAGATAGACAATTATCTCCTCCTCGCAGCCGATAGATCTG AGGCTTTGGCACTTGAGTGTATCCTTGCAACGAACACCACCAATACCAGC AGCAGTAGCAGCACAGAAAGCAGAGGAGGAGAGGTGGTATGGATGGATCC AGGGAAGCTGAGATTGCGTGGATGGGATGGAAGCAAGGCCTACTTTGAGC AGAAAACGTCGGGCCGAGCCTCGCCGGCAGTGCTGGCACTTGCAACGGGT CAATTGATTGAGCGACTGCTGCGATTGGATTTGGCCGTAGTGTTGCTTCC GTCGCTCCTTCCCTCTACGTCTCTCATGTCCTCCTCGGTGCAGGCGCTAC TACGGAAGGAAAACGACGTATTTCAGAAGGATGGACGGGTAATGACCGCG TTGGTGGCATCCTTACTTTCTATTCGTGATGAGGAGGCATGCGATGTGAC TTTGTGGGAGGAAGGACAGGTGAAGATAGACAAAATTAATGCAGCACAGA CAACGGCGCATGGGATACAGGAGACTGTATTTTCAGACGAGAACGAGCAA CGGCCCCTTCCATTCGCGTATGCTCTTTTTCAGCCCACAAGCACGGTTTT GAAGGGATGGGAAGTGGTCTTGTCCTGTTTGGAGGAGGATGTCCGGCACA CGAAAAGCCAGCAGGGATTGTGCTTGACTAAAGTAATCTCTGCCGCATGC CGTGAATCGATTCCGTCAGCCGCAGCCCCCTCATATAGGTGA back to top
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