NO09G02560, NO09G02560 (gene) Nannochloropsis oceanica

Overview
NameNO09G02560
Unique NameNO09G02560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1618
Alignment locationchr9:758738..760355 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:758738..760355 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G02560 vs. NCBI_GenBank
Match: EWM27581.1 (hypothetical protein Naga_100015g23 [Nannochloropsis gaditana])

HSP 1 Score: 470.3 bits (1209), Expect = 5.000e-129
Identity = 259/329 (78.72%), Postives = 282/329 (85.71%), Query Frame = 0 
Query:   10 MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQEDPTARACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQSSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVEDQAKRRGELNMKAEAGAGRRGVLDRPNSTAIQTFVXXXXXXXXXXXXXXXXXXPFNAESAVMVGLVVVDQVLGVMTKEIQENLQSTCRGVEERLLADLSRLEEKMGRIEEVYDDIAADIRLTSLLSALEGAKIARGMANAEEEERGMEGAAQEGLSEEKGEDVESPTGAWGTPGGLTPDMYYGVGVGV 339
            MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQ DPTARACYL+VALEHQARVQELDLICAAPTIVVNLMRGKS+T MSYTYLTTLKGQ+SEEYPGLF FRIDASLLSHVEVWQLQIKFLFPRVGE SLL+KK+SVIVEDQAK+RGELNMKAE GAG+RGVLDR NSTAIQ +        XXXXXXX    PFNAESAVMVGLVVVDQVLGVMTKEIQ+NL+STCRGVE+RLLADL RLE KM RIEEVYDDIAADIRLTSL SALE A++A+G+A  + E++    A      +E+G+    P G WGT G L  D+YYG+GVGV
Sbjct:    1 MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQTDPTARACYLHVALEHQARVQELDLICAAPTIVVNLMRGKSTTGMSYTYLTTLKGQTSEEYPGLFAFRIDASLLSHVEVWQLQIKFLFPRVGEKSLLIKKVSVIVEDQAKKRGELNMKAETGAGKRGVLDRTNSTAIQNY---NPQQQXXXXXXXVPPQPFNAESAVMVGLVVVDQVLGVMTKEIQDNLESTCRGVEKRLLADLKRLEGKMRRIEEVYDDIAADIRLTSLQSALEEARMAQGLAANDPEKKSATDADGGNEDQEEGD----PGGVWGT-GALQQDIYYGIGVGV 321
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BLAST of NO09G02560 vs. NCBI_GenBank
Match: EWM26125.1 (hypothetical protein Naga_100014g61 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 1.500e-11
Identity = 49/175 (28.00%), Postives = 96/175 (54.86%), Query Frame = 0 
Query:   10 MPYLKSNW--SSMPPLEE---FGRFAFGEIFTIPEMTLTQEDPTARACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQSSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVEDQAKRRGEL-------NMKAEAGAGRRGV 173
            MP+ K NW  +S PP +       FAFG+ + + + TL + +  A+ C L V+LEH ++V +L ++C A  + V++M  ++  A  + ++T ++G      P L+ FR    LL+  ++W+L++KFLF     +++ ++ +S+  E   +R   +       ++++ AG  R G+
Sbjct:    1 MPHSKFNWRSTSSPPSQNPDGLFAFAFGDTWKLTDYTLVKPE-NAKGCTLDVSLEHDSKVTQLQVVCNASALQVSVM--QAMNAQDFKWITQMRGTPLPNQPDLYYFRTPEELLTQ-KLWRLRVKFLFSSTDISAVRIQTLSLSFEKLTRRGSTIKGMVTSSSIRSSAGVARTGM 171
The following BLAST results are available for this feature:
BLAST of NO09G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27581.15.000e-12978.72hypothetical protein Naga_100015g23 [Nannochlorops... [more]
EWM26125.11.500e-1128.00hypothetical protein Naga_100014g61 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010774NSK010774Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02560.1NO09G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588639gene_4292Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g23gene3014Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02560.1NO09G02560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02560 ID=NO09G02560|Name=NO09G02560|organism=Nannochloropsis oceanica|type=gene|length=1618bp
GTTTGAATTACGAACCAGCACCCGAAGTCCTTGGCAATCAACCTAGCGCC
CACTCGCCTCTCTCTCTCACCACACAGGAAGCAATTGTACCACAAGGTCC
TAATCATGATATATTGTGCTGTTCTCTCATGGGAAAGAGACTTTGCTTGA
CTGGCATTGCTTGGCAAGTAGTCAAGGAAGCTCTCTCGTCCTGCATGTCG
CCATACCCTCGCTCAGGCCACGCTACGCACTGAGCTTCTGCAACTGAACC
CACCACACTGTCCTTTCTCACTCACCATCCAACACACAATACATATGAAC
ACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTGGTCATC
CATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAATTTTCA
CCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGGGCCTGC
TACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTTGGATTT
AATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCAAATCCT
CCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAAAGCTCA
GAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCTGTTGTC
GCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCCGGGTGG
GGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAGGACCAG
GCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGCAGGCAG
GCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTTTTGTTC
CGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCGCCCCCC
CAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGTGGTGGA
CCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTCAGTCAA
CTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGGCTAGAG
GAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGCGGACAT
TCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTGCGCGGG
GCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCAGCACAG
GAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAACGGGGGC
TTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCGTTGGTG
TCGGAGTGTAAAGAGATTAAAAAGTGGAGGGGTACTATGAAAGATGCACG
AGTATGTGAGTGGAAAAGAGCGAAATATGTGAGAGGAAAAGAGCGATGTG
ATGTGAAAGTGATTGAGTGCGGTGAGTCATGCGATGAAGGGGAAGAGAAG
TAGGGAAACAGACCAGAGGTGAATCATAATGGCCCTCGTTTCGAGCTCAA
ATGGCCACAAAAGAAAGATTCCGAGAGCCTCAACAGCATCAATCGGGAAA
GCCGAAAGCAAAACAGAGAGTGGTCGACTAAGATTGATCCAAAGAAAAAA
CAAAACATGTCCGTAAGA
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protein sequence of NO09G02560.1

>NO09G02560.1-protein ID=NO09G02560.1-protein|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MNTRSEGEEMPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQEDPTAR
ACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQ
SSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVE
DQAKRRGELNMKAEAGAGRRGVLDRPNSTAIQTFVPPPQQQRQQGYGPPP
PPQPFNAESAVMVGLVVVDQVLGVMTKEIQENLQSTCRGVEERLLADLSR
LEEKMGRIEEVYDDIAADIRLTSLLSALEGAKIARGMANAEEEERGMEGA
AQEGLSEEKGEDVESPTGAWGTPGGLTPDMYYGVGVGV*
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Synonyms
Publications