NO09G02560.1, NO09G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02560.1
Unique NameNO09G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1618
Alignment locationchr9:758738..760355 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:758738..760355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02560.1 vs.
Match: EWM27581.1 (hypothetical protein Naga_100015g23 [Nannochloropsis gaditana])

HSP 1 Score: 493.8 bits (1270), Expect = 4.200e-136
Identity = 262/329 (79.64%), Postives = 287/329 (87.23%), Query Frame = 0 
Query:   10 MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQEDPTARACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQSSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVEDQAKRRGELNMKAEAGAGRRGVLDRPNSTAIQTFVPPPQQQRQQGYGPPPPPQPFNAESAVMVGLVVVDQVLGVMTKEIQENLQSTCRGVEERLLADLSRLEEKMGRIEEVYDDIAADIRLTSLLSALEGAKIARGMANAEEEERGMEGAAQEGLSEEKGEDVESPTGAWGTPGGLTPDMYYGVGVGV 339
            MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQ DPTARACYL+VALEHQARVQELDLICAAPTIVVNLMRGKS+T MSYTYLTTLKGQ+SEEYPGLF FRIDASLLSHVEVWQLQIKFLFPRVGE SLL+KK+SVIVEDQAK+RGELNMKAE GAG+RGVLDR NSTAIQ + P   QQ++Q Y PP PPQPFNAESAVMVGLVVVDQVLGVMTKEIQ+NL+STCRGVE+RLLADL RLE KM RIEEVYDDIAADIRLTSL SALE A++A+G+A  + E++    A      +E+G+    P G WGT G L  D+YYG+GVGV
Sbjct:    1 MPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQTDPTARACYLHVALEHQARVQELDLICAAPTIVVNLMRGKSTTGMSYTYLTTLKGQTSEEYPGLFAFRIDASLLSHVEVWQLQIKFLFPRVGEKSLLIKKVSVIVEDQAKKRGELNMKAETGAGKRGVLDRTNSTAIQNYNP---QQQRQYYPPPVPPQPFNAESAVMVGLVVVDQVLGVMTKEIQDNLESTCRGVEKRLLADLKRLEGKMRRIEEVYDDIAADIRLTSLQSALEEARMAQGLAANDPEKKSATDADGGNEDQEEGD----PGGVWGT-GALQQDIYYGIGVGV 321
The following BLAST results are available for this feature:
BLAST of NO09G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27581.14.200e-13679.64hypothetical protein Naga_100015g23 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02560NO09G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02560.1NO09G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02560.1.cds1NO09G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02560.1 ID=NO09G02560.1|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp
GTTTGAATTACGAACCAGCACCCGAAGTCCTTGGCAATCAACCTAGCGCC
CACTCGCCTCTCTCTCTCACCACACAGGAAGCAATTGTACCACAAGGTCC
TAATCATGATATATTGTGCTGTTCTCTCATGGGAAAGAGACTTTGCTTGA
CTGGCATTGCTTGGCAAGTAGTCAAGGAAGCTCTCTCGTCCTGCATGTCG
CCATACCCTCGCTCAGGCCACGCTACGCACTGAGCTTCTGCAACTGAACC
CACCACACTGTCCTTTCTCACTCACCATCCAACACACAATACATATGAAC
ACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTGGTCATC
CATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAATTTTCA
CCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGGGCCTGC
TACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTTGGATTT
AATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCAAATCCT
CCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAAAGCTCA
GAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCTGTTGTC
GCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCCGGGTGG
GGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAGGACCAG
GCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGCAGGCAG
GCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTTTTGTTC
CGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCGCCCCCC
CAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGTGGTGGA
CCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTCAGTCAA
CTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGGCTAGAG
GAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGCGGACAT
TCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTGCGCGGG
GCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCAGCACAG
GAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAACGGGGGC
TTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCGTTGGTG
TCGGAGTGTAAAGAGATTAAAAAGTGGAGGGGTACTATGAAAGATGCACG
AGTATGTGAGTGGAAAAGAGCGAAATATGTGAGAGGAAAAGAGCGATGTG
ATGTGAAAGTGATTGAGTGCGGTGAGTCATGCGATGAAGGGGAAGAGAAG
TAGGGAAACAGACCAGAGGTGAATCATAATGGCCCTCGTTTCGAGCTCAA
ATGGCCACAAAAGAAAGATTCCGAGAGCCTCAACAGCATCAATCGGGAAA
GCCGAAAGCAAAACAGAGAGTGGTCGACTAAGATTGATCCAAAGAAAAAA
CAAAACATGTCCGTAAGA
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protein sequence of NO09G02560.1

>NO09G02560.1-protein ID=NO09G02560.1-protein|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MNTRSEGEEMPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQEDPTAR
ACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQ
SSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVE
DQAKRRGELNMKAEAGAGRRGVLDRPNSTAIQTFVPPPQQQRQQGYGPPP
PPQPFNAESAVMVGLVVVDQVLGVMTKEIQENLQSTCRGVEERLLADLSR
LEEKMGRIEEVYDDIAADIRLTSLLSALEGAKIARGMANAEEEERGMEGA
AQEGLSEEKGEDVESPTGAWGTPGGLTPDMYYGVGVGV*
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mRNA from alignment at chr9:758738..760355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02560.1 ID=NO09G02560.1|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp|location=Sequence derived from alignment at chr9:758738..760355+ (Nannochloropsis oceanica)
GTTTGAATTACGAACCAGCACCCGAAGTCCTTGGCAATCAACCTAGCGCC
CACTCGCCTCTCTCTCTCACCACACAGGAAGCAATTGTACCACAAGGTCC
TAATCATGATATATTGTGCTGTTCTCTCATGGGAAAGAGACTTTGCTTGA
CTGGCATTGCTTGGCAAGTAGTCAAGGAAGCTCTCTCGTCCTGCATGTCG
CCATACCCTCGCTCAGGCCACGCTACGCACTGAGCTTCTGCAACTGAACC
CACCACACTGTCCTTTCTCACTCACCATCCAACACACAATACATATGAAC
ACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTGGTCATC
CATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAATTTTCA
CCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGGGCCTGC
TACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTTGGATTT
AATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCAAATCCT
CCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAAAGCTCA
GAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCTGTTGTC
GCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCCGGGTGG
GGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAGGACCAG
GCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGCAGGCAG
GCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTTTTGTTC
CGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCGCCCCCC
CAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGTGGTGGA
CCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTCAGTCAA
CTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGGCTAGAG
GAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGCGGACAT
TCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTGCGCGGG
GCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCAGCACAG
GAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAACGGGGGC
TTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCGTTGGTG
TCGGAGTGTAAAGAGATTAAAAAGTGGAGGGGTACTATGAAAGATGCACG
AGTATGTGAGTGGAAAAGAGCGAAATATGTGAGAGGAAAAGAGCGATGTG
ATGTGAAAGTGATTGAGTGCGGTGAGTCATGCGATGAAGGGGAAGAGAAG
TAGGGAAACAGACCAGAGGTGAATCATAATGGCCCTCGTTTCGAGCTCAA
ATGGCCACAAAAGAAAGATTCCGAGAGCCTCAACAGCATCAATCGGGAAA
GCCGAAAGCAAAACAGAGAGTGGTCGACTAAGATTGATCCAAAGAAAAAA
CAAAACATGTCCGTAAGA
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Coding sequence (CDS) from alignment at chr9:758738..760355+

>NO09G02560.1 ID=NO09G02560.1|Name=NO09G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr9:758738..760355+ (Nannochloropsis oceanica)
ATGAACACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTG
GTCATCCATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAA
TTTTCACCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGG
GCCTGCTACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTT
GGATTTAATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCA
AATCCTCCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAA
AGCTCAGAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCT
GTTGTCGCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCC
GGGTGGGGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAG
GACCAGGCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGC
AGGCAGGCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTT
TTGTTCCGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCG
CCCCCCCAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGT
GGTGGACCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTC
AGTCAACTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGG
CTAGAGGAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGC
GGACATTCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTG
CGCGGGGCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCA
GCACAGGAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAAC
GGGGGCTTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCG
TTGGTGTCGGAGTGTAA
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Synonyms
Publications