NO09G02480, NO09G02480 (gene) Nannochloropsis oceanica

Overview
NameNO09G02480
Unique NameNO09G02480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1983
Alignment locationchr9:741528..743510 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:741528..743510 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
Homology
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BLAST of NO09G02480 vs. NCBI_GenBank
Match: EWM27542.1 (hypothetical protein Naga_100015g16 [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 2.600e-82
Identity = 143/220 (65.00%), Postives = 166/220 (75.45%), Query Frame = 0 
Query:   30 SASSNSRVNFDAQADSNTWCKPADPDMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGRAAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGREQIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFDEQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAAWGARCYG 250
            S  S      D Q +SNTWCK ADP+M  WAAPI+ DILELYHCR  DPRV+ RYAPDAVFDDPAG L GR AIRVAMEALPK+F  GEP++V ITYH PLVGGERN F++G      G+EQ+GPQARI LVQ Y WR+D+LP  LSPGV LG    + V LPTVV+LTFD +T L+TRHEDRWWGKDT ++S  + P+H ++K LNGR W  WGARCYG
Sbjct:   30 SFGSTKTAPLDPQIESNTWCKQADPEMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGRPAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGERNGFRNG--DEHKGQEQVGPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAKTHLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAWEVWGARCYG 247
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BLAST of NO09G02480 vs. NCBI_GenBank
Match: XP_009037272.1 (hypothetical protein AURANDRAFT_64475 [Aureococcus anophagefferens] >EGB07896.1 hypothetical protein AURANDRAFT_64475 [Aureococcus anophagefferens])

HSP 1 Score: 90.5 bits (223), Expect = 8.000e-15
Identity = 65/188 (34.57%), Postives = 88/188 (46.81%), Query Frame = 0 
Query:   55 DMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGRAAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGREQIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFDEQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAA 243
            DM +WAAPI   I   +  R D   +   Y   AVFDDP GT+  RA I    EA+  +F   + ++   TYHPPL  G+    +D   G+  G + +  QAR   V  Y +RR  L F                AL + + LTF +  R+   HEDRWWG+ T      +   HGL K  +G  +AA
Sbjct:   12 DMEAWAAPICATIQRAHCGRFDGAALRALYGEGAVFDDPCGTI-PRAGIVAGFEAIRWLFD-VDAKHEPWTYHPPLFRGQA-LSEDAVGGAGDG-DVVPAQARCRQVATYAFRRAPLSF----------------ALESTIVLTFADDRRIAV-HEDRWWGRAT-----TLNAAHGLFKRAHGAAFAA 173
The following BLAST results are available for this feature:
BLAST of NO09G02480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27542.12.600e-8265.00hypothetical protein Naga_100015g16 [Nannochlorops... [more]
XP_009037272.18.000e-1534.57hypothetical protein AURANDRAFT_64475 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010779NSK010779Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02480.1NO09G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588665gene_4300Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g16gene3019Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02480.1NO09G02480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02480 ID=NO09G02480|Name=NO09G02480|organism=Nannochloropsis oceanica|type=gene|length=1983bp
CTCGACTCTGGCGAGAGGACAGGTCTGTGTCATTTTCTCCGGGTGTGTAT
GTGTTCGTCGACATCCTCGCATTGAGAACGCTAGCGTGGCACATCTAGTG
CTGGTGCAAAAGATGAAATATTTCATTGGGAAAGCTCGACACAGCTCATA
GCTCGCAGTTTACAGCTCGCATGGTGATTCATAGTTCGTTTTTTCTGCCG
TTCCTTCTATAGAACTATCACATGCAACCTGACGTCCTCTAGGACTTGCA
TTACGAGGGGGAGCCTTCCAACAATGGAATGTTGCCTATTCACCCCTTAT
TTCTTGTCCGAGTTTTTCTAGCGACTTTGACAGTTTTTTCATCGGGCAAA
GTTTCCGGACGGCCCACACAGGGCCAGAAGGAGAAGGGTGAGGGGGATAA
AAGAGGAGGTCAGCGGGGAGGCTACACATAGAGTGTCCGCATACCCTTTT
TGGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCA
TCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCA
GCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGT
AAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGA
Tgtacgtaccacaagtagcaggggcctcttattatttacggcctcttatt
tttttcgttgttgttgtcgttgtaattgaataaagttgtcaatgagatca
gctccggccgtgatgtgcgttaatgatatagcgttaattatgtcggaaca
ccacattatgtcatcaacttttgatgagtctctccttcccgacgtccgct
cccctcttcacgacaaaaaccgcagATTTTAGAGCTGTACCACTGCCGAG
CCGACGATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGTCTTTGAC
GATCCTGCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCGCCATGGA
AGCCCTGgtacgtgtgcgtggggtcacctgccggctgcaggtgctcgtat
tcgtatatgtgtttcattttcacgttcttgtgcacgctttttgtaaatat
tgtaattacgacagtgttaaagctatgtgcctacctagatcagaattaaa
atatagctggcgtcgtcctctcgtgtaagctcgacggctcccggcacatg
ctgtcacacgcgaaaaagaaagttgagagcgagcattttggttactccca
cagcatactttaccacccacctttttaccgcgttgttataccctcatgaa
atccaagcatgctgtcgctcattcattcctaccccaatctcttcctcttc
tcgacaaaaaacagCCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTC
GACATTACATACCATCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCA
AGATGGCGGCAACGGAAGCAGTACGGGGCGAGAGCAGgtttaaaggagga
agaaggggaaatgggaagaggaaagaaaaaataggcaacacttcatgatc
acatagtctcccttcttccatcctcaatagATCGGCCCACAAGCCCGCAT
CACTCTTGTACAGATGTACGAATGGCGGCGAGATCTGCTTCCTTTTGGCT
TGTCGCCGGGCGTCTTTTTGGGTCATCAAAAAGACTCCATGGTCGCCCTG
CCCACCGTGGTATATCTCACTTTTGACGAGCAAACCCGCCTTGTGACCAG
GCACGAAGATCGGTGGTGGGGCAAGGACACCCAGAGCACCTCCTTCCTTG
TCGGCCCCTTACATGGCCTTGTCAAGCACCTAAATGGGCGGATGTGGGCG
GCATGGGGTGCGCGGTGCTATGGTGGTTGATGAGTCCCACGACATGGGCC
AGCAATGCAGCCACCCATATCGAAGGGGAAACTATGTTTAATTAATTTGA
AACAAAGCAAGACAGATATCAGATGTTCACGTA
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protein sequence of NO09G02480.1

>NO09G02480.1-protein ID=NO09G02480.1-protein|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MWCPGFLPLPSLRTLHLSRRLRPFMRPLCSASSNSRVNFDAQADSNTWCK
PADPDMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGR
AAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGRE
QIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFD
EQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAAWGARCYGG
*
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Synonyms
Publications