NO09G02480.1, NO09G02480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02480.1
Unique NameNO09G02480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1309
Alignment locationchr9:741528..743510 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:741528..743510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02480.1 vs.
Match: EWM27542.1 (hypothetical protein Naga_100015g16 [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 2.600e-82
Identity = 143/220 (65.00%), Postives = 166/220 (75.45%), Query Frame = 0 
Query:   30 SASSNSRVNFDAQADSNTWCKPADPDMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGRAAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGREQIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFDEQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAAWGARCYG 250
            S  S      D Q +SNTWCK ADP+M  WAAPI+ DILELYHCR  DPRV+ RYAPDAVFDDPAG L GR AIRVAMEALPK+F  GEP++V ITYH PLVGGERN F++G      G+EQ+GPQARI LVQ Y WR+D+LP  LSPGV LG    + V LPTVV+LTFD +T L+TRHEDRWWGKDT ++S  + P+H ++K LNGR W  WGARCYG
Sbjct:   30 SFGSTKTAPLDPQIESNTWCKQADPEMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGRPAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGERNGFRNG--DEHKGQEQVGPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAKTHLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAWEVWGARCYG 247
The following BLAST results are available for this feature:
BLAST of NO09G02480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27542.12.600e-8265.00hypothetical protein Naga_100015g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02480NO09G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02480.1NO09G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02480.1.cds1NO09G02480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02480.1.cds2NO09G02480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02480.1.cds3NO09G02480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02480.1.cds4NO09G02480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02480.1 ID=NO09G02480.1|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp
CTCGACTCTGGCGAGAGGACAGGTCTGTGTCATTTTCTCCGGGTGTGTAT
GTGTTCGTCGACATCCTCGCATTGAGAACGCTAGCGTGGCACATCTAGTG
CTGGTGCAAAAGATGAAATATTTCATTGGGAAAGCTCGACACAGCTCATA
GCTCGCAGTTTACAGCTCGCATGGTGATTCATAGTTCGTTTTTTCTGCCG
TTCCTTCTATAGAACTATCACATGCAACCTGACGTCCTCTAGGACTTGCA
TTACGAGGGGGAGCCTTCCAACAATGGAATGTTGCCTATTCACCCCTTAT
TTCTTGTCCGAGTTTTTCTAGCGACTTTGACAGTTTTTTCATCGGGCAAA
GTTTCCGGACGGCCCACACAGGGCCAGAAGGAGAAGGGTGAGGGGGATAA
AAGAGGAGGTCAGCGGGGAGGCTACACATAGAGTGTCCGCATACCCTTTT
TGGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCA
TCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCA
GCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGT
AAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGA
TATTTTAGAGCTGTACCACTGCCGAGCCGACGATCCGCGTGTTTTCGAAA
GATACGCGCCAGATGCAGTCTTTGACGATCCTGCGGGAACGCTGCATGGA
CGCGCGGCTATTCGAGTCGCCATGGAAGCCCTGCCCAAGGTTTTTAGTCA
CGGCGAGCCCCAAAATGTCGACATTACATACCATCCACCACTGGTTGGAG
GAGAGCGGAATCGTTTCCAAGATGGCGGCAACGGAAGCAGTACGGGGCGA
GAGCAGATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATG
GCGGCGAGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTC
ATCAAAAAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTT
GACGAGCAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAA
GGACACCCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCA
AGCACCTAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGT
GGTTGATGAGTCCCACGACATGGGCCAGCAATGCAGCCACCCATATCGAA
GGGGAAACTATGTTTAATTAATTTGAAACAAAGCAAGACAGATATCAGAT
GTTCACGTA
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protein sequence of NO09G02480.1

>NO09G02480.1-protein ID=NO09G02480.1-protein|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MWCPGFLPLPSLRTLHLSRRLRPFMRPLCSASSNSRVNFDAQADSNTWCK
PADPDMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGR
AAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGRE
QIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFD
EQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAAWGARCYGG
*
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mRNA from alignment at chr9:741528..743510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02480.1 ID=NO09G02480.1|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at chr9:741528..743510+ (Nannochloropsis oceanica)
CTCGACTCTGGCGAGAGGACAGGTCTGTGTCATTTTCTCCGGGTGTGTAT
GTGTTCGTCGACATCCTCGCATTGAGAACGCTAGCGTGGCACATCTAGTG
CTGGTGCAAAAGATGAAATATTTCATTGGGAAAGCTCGACACAGCTCATA
GCTCGCAGTTTACAGCTCGCATGGTGATTCATAGTTCGTTTTTTCTGCCG
TTCCTTCTATAGAACTATCACATGCAACCTGACGTCCTCTAGGACTTGCA
TTACGAGGGGGAGCCTTCCAACAATGGAATGTTGCCTATTCACCCCTTAT
TTCTTGTCCGAGTTTTTCTAGCGACTTTGACAGTTTTTTCATCGGGCAAA
GTTTCCGGACGGCCCACACAGGGCCAGAAGGAGAAGGGTGAGGGGGATAA
AAGAGGAGGTCAGCGGGGAGGCTACACATAGAGTGTCCGCATACCCTTTT
TGGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCA
TCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCA
GCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGT
AAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGA
TGTACGTACCACAAGTAGCAGGGGCCTCTTATTATTTACGGCCTCTTATT
TTTTTCGTTGTTGTTGTCGTTGTAATTGAATAAAGTTGTCAATGAGATCA
GCTCCGGCCGTGATGTGCGTTAATGATATAGCGTTAATTATGTCGGAACA
CCACATTATGTCATCAACTTTTGATGAGTCTCTCCTTCCCGACGTCCGCT
CCCCTCTTCACGACAAAAACCGCAGATTTTAGAGCTGTACCACTGCCGAG
CCGACGATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGTCTTTGAC
GATCCTGCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCGCCATGGA
AGCCCTGGTACGTGTGCGTGGGGTCACCTGCCGGCTGCAGGTGCTCGTAT
TCGTATATGTGTTTCATTTTCACGTTCTTGTGCACGCTTTTTGTAAATAT
TGTAATTACGACAGTGTTAAAGCTATGTGCCTACCTAGATCAGAATTAAA
ATATAGCTGGCGTCGTCCTCTCGTGTAAGCTCGACGGCTCCCGGCACATG
CTGTCACACGCGAAAAAGAAAGTTGAGAGCGAGCATTTTGGTTACTCCCA
CAGCATACTTTACCACCCACCTTTTTACCGCGTTGTTATACCCTCATGAA
ATCCAAGCATGCTGTCGCTCATTCATTCCTACCCCAATCTCTTCCTCTTC
TCGACAAAAAACAGCCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTC
GACATTACATACCATCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCA
AGATGGCGGCAACGGAAGCAGTACGGGGCGAGAGCAGGTTTAAAGGAGGA
AGAAGGGGAAATGGGAAGAGGAAAGAAAAAATAGGCAACACTTCATGATC
ACATAGTCTCCCTTCTTCCATCCTCAATAGATCGGCCCACAAGCCCGCAT
CACTCTTGTACAGATGTACGAATGGCGGCGAGATCTGCTTCCTTTTGGCT
TGTCGCCGGGCGTCTTTTTGGGTCATCAAAAAGACTCCATGGTCGCCCTG
CCCACCGTGGTATATCTCACTTTTGACGAGCAAACCCGCCTTGTGACCAG
GCACGAAGATCGGTGGTGGGGCAAGGACACCCAGAGCACCTCCTTCCTTG
TCGGCCCCTTACATGGCCTTGTCAAGCACCTAAATGGGCGGATGTGGGCG
GCATGGGGTGCGCGGTGCTATGGTGGTTGATGAGTCCCACGACATGGGCC
AGCAATGCAGCCACCCATATCGAAGGGGAAACTATGTTTAATTAATTTGA
AACAAAGCAAGACAGATATCAGATGTTCACGTA
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Coding sequence (CDS) from alignment at chr9:741528..743510+

>NO09G02480.1 ID=NO09G02480.1|Name=NO09G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr9:741528..743510+ (Nannochloropsis oceanica)
ATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCATCT
ATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCAGCA
ACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGTAAG
CCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGATAT
TTTAGAGCTGTACCACTGCCGAGCCGACGATCCGCGTGTTTTCGAAAGAT
ACGCGCCAGATGCAGTCTTTGACGATCCTGCGGGAACGCTGCATGGACGC
GCGGCTATTCGAGTCGCCATGGAAGCCCTGCCCAAGGTTTTTAGTCACGG
CGAGCCCCAAAATGTCGACATTACATACCATCCACCACTGGTTGGAGGAG
AGCGGAATCGTTTCCAAGATGGCGGCAACGGAAGCAGTACGGGGCGAGAG
CAGATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATGGCG
GCGAGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTCATC
AAAAAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTTGAC
GAGCAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAAGGA
CACCCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCAAGC
ACCTAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGTGGT
TGA
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Synonyms
Publications