NO09G02360, NO09G02360 (gene) Nannochloropsis oceanica

Overview
NameNO09G02360
Unique NameNO09G02360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1761
Alignment locationchr9:709606..711366 +

Link to JBrowse

Properties
Property NameValue
DescriptionEF-Hand 1, calcium-binding site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:709606..711366 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO09G02360 vs. NCBI_GenBank
Match: EWM27553.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 295.8 bits (756), Expect = 1.300e-76
Identity = 183/203 (90.15%), Postives = 196/203 (96.55%), Query Frame = 0 
Query:   52 GPNAIELGKENKRATYMAVVGGILAGYWFSGWNFRGKNKKLKQKYERDIAQQERRIEDAIRSIRQQYEEVLEKKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKISRREFDQYMRQYLAANPEYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAQEQLMYQQQQKGKATGRRK 255
            GPNAIELGKENKRATY A+ GG+LAGYW SGWN+R KNKK+KQKYERD+A QE+R+EDAIRS+RQQYE+VLE+KQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKI+RREFDQYMRQYLAANPEYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAQEQLMYQQQ+KGK  GRR+
Sbjct:   51 GPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAQEQLMYQQQKKGKMAGRRR 253
[Close]
BLAST of NO09G02360 vs. NCBI_GenBank
Match: EWM27554.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.600e-74
Identity = 181/203 (89.16%), Postives = 195/203 (96.06%), Query Frame = 0 
Query:   52 GPNAIELGKENKRATYMAVVGGILAGYWFSGWNFRGKNKKLKQKYERDIAQQERRIEDAIRSIRQQYEEVLEKKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKISRREFDQYMRQYLAANPEYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAQEQLMYQQQQKGKATGRRK 255
            GPNAIELGKENKRATY A+ GG+LAGYW SGWN+R KNKK+KQKYERD+A QE+R+EDAIRS+RQQYE+VLE+KQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKI+RREFDQYMRQYLAANPEYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA +QEQLMYQQQ+KGK  GRR+
Sbjct:   51 GPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-SQEQLMYQQQKKGKMAGRRR 252
The following BLAST results are available for this feature:
BLAST of NO09G02360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27553.11.300e-7690.15EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
EWM27554.12.600e-7489.16EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010793NSK010793Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02360.1NO09G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588707gene_4312Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g2gene3030Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02360.1NO09G02360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02360 ID=NO09G02360|Name=NO09G02360|organism=Nannochloropsis oceanica|type=gene|length=1761bp
ATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTGTCTT
GGTAGCCATCATGCTACTCATGGAGgtgtgtgggcgtgcatggatgggag
gaggccagcttttgggaagggcaggctggactagagttcaggcatcatca
tccatctaatctgttttaacgtcaacctgatacaatagAATGTGATAGGG
CAACAACAACAGCAGCTGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCC
ACGAAGGCGACCACCGGGACCCAACGCCATCGAGCTGGGAAAGGAGAATA
Agtacgtgggtcgctttgataccctgtccaacttctgtgcggctgtgcct
aacccttgccccttagtcccgtttgagccgggggggtctgatcattttga
ttcattgtcctatatcttgacagGCGGGCCACATATATGGCCGTAGTAGG
GGGAATTTTGGCGGGGTACTGGTTTTCGGGGTGGAATTTCAGGGGTAAGA
ACAAGAAGCTGAAGCAGAAATACGAGAGGGATATTGCGgtacgtgccttt
tcgagttttaattggtttgaacgttgtaggatggagtcatgggaggatgg
attgcgacatatggagctttttctgccacgcacatcgtttcgttttgttt
gcatgtttttgagatgccacgcaaaagattctcaatttcccctcacctct
ctcccttcctccctgcgtccctcccacacaccgatcccagCAACAAGAGA
GGCGCATTGAGGACGCCATCCGTTCGATACGGCAACAGTACGAGGAGGTC
CTGGAGAAAAAGCAAGAAGAGTACGTGGAGAAATACAAGCACCTGCAGTA
CATTGAAgtaaggaaggaggaagggaggagttagggaaggagggatgtag
ggtatggcagctgacgtggatcatcatatggataaagtggggcacacctg
ctacataataccatactaatctggaagacacacgcataaatatgtacaca
ggcatagactcacacgcaccctgtcgttttgactcacccacctacccatt
cacgcacccacgcacagAACGCGATGGGCGAGGCAGGCATCCCGGTAGAC
CTGTCGATGGTCTCTCCCTCTGCCTCCCTGCAGCAAGATTACGCCGAATT
CAAACAGCCAGACCTCAACGGCGACGACAAGATCTCGAGGCGGGAGgtaa
gttgaaaagagaggatagtagggcttgagagagagggaggttgcttcggc
gtcatttcccccgtggttgtcccttgacagttcgaatgggtacaggtcgt
ccgtcttctaacccctctcctttttatttttgtcatcatgatcatagttt
ctttatattcctttttatttttggtattcacctgtccctccctccttccc
tccctccttccctccatctccctagTTCGACCAGTACATGCGTCAATACC
TAGCAGCCAACCCCGAGTACAGCAAATATGACTACCCTTCTTTCGATGAG
TTTGACAAGGACGGGGATAATTCCATTACCTTCGCGGAGTGGCAGCAGTA
CATCCAAGATGCTGAGGCGGCGGCACgtaggtggacttcagaagggaggg
aggaggattgagaggggcagagggcagggtttgcaaataaatggagtctg
gaagtattgactattctcatgtccttgttatccctacgaactacagTGGC
CCAAGAACAGCTCATGTACCAGCAGCAGCAAAAGGGGAAAGCAACTGGGC
GGCGAAAGTAA
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protein sequence of NO09G02360.1

>NO09G02360.1-protein ID=NO09G02360.1-protein|Name=NO09G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MAGKGFNQWSTARRLVLVAIMLLMENVIGQQQQQLHRYPGPGGPPPRRRP
PGPNAIELGKENKRATYMAVVGGILAGYWFSGWNFRGKNKKLKQKYERDI
AQQERRIEDAIRSIRQQYEEVLEKKQEEYVEKYKHLQYIENAMGEAGIPV
DLSMVSPSASLQQDYAEFKQPDLNGDDKISRREFDQYMRQYLAANPEYSK
YDYPSFDEFDKDGDNSITFAEWQQYIQDAEAAALAQEQLMYQQQQKGKAT
GRRK*
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Synonyms
Publications