NO09G02360.1, NO09G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02360.1
Unique NameNO09G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr9:709606..711366 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:709606..711366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02360.1 vs.
Match: EWM27553.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 425.2 bits (1092), Expect = 1.400e-115
Identity = 211/254 (83.07%), Postives = 232/254 (91.34%), Query Frame = 0 
Query:    1 MAGKGFNQWSTARRLVLVAIMLLMENVIGQQQQQLHRYPGPGGPPPRRRPPGPNAIELGKENKRATYMAVVGGILAGYWFSGWNFRGKNKKLKQKYERDIAQQERRIEDAIRSIRQQYEEVLEKKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKISRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNSITFAEWQQYIQDAEAAALAQEQLMYQQQQKGKATGRRK 255
            MA +  N      +  LV+I+ L++  +GQQQQQLHRYPGPGGPP RRRPPGPNAIELGKENKRATY A+ GG+LAGYW SGWN+R KNKK+KQKYERD+A QE+R+EDAIRS+RQQYE+VLE+KQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKI+RREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDN+ITFAEWQQYIQDAEAAALAQEQLMYQQQ+KGK  GRR+
Sbjct:    1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPP-RRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAALAQEQLMYQQQKKGKMAGRRR 253
The following BLAST results are available for this feature:
BLAST of NO09G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27553.11.400e-11583.07EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02360NO09G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02360.1NO09G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02360.1.cds1NO09G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02360.1.cds2NO09G02360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02360.1.cds3NO09G02360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02360.1.cds4NO09G02360.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02360.1.cds5NO09G02360.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02360.1.cds6NO09G02360.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02360.1.cds7NO09G02360.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02360.1 ID=NO09G02360.1|Name=NO09G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
ATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTGTCTT
GGTAGCCATCATGCTACTCATGGAGAATGTGATAGGGCAACAACAACAGC
AGCTGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCCACGAAGGCGACCA
CCGGGACCCAACGCCATCGAGCTGGGAAAGGAGAATAAGCGGGCCACATA
TATGGCCGTAGTAGGGGGAATTTTGGCGGGGTACTGGTTTTCGGGGTGGA
ATTTCAGGGGTAAGAACAAGAAGCTGAAGCAGAAATACGAGAGGGATATT
GCGCAACAAGAGAGGCGCATTGAGGACGCCATCCGTTCGATACGGCAACA
GTACGAGGAGGTCCTGGAGAAAAAGCAAGAAGAGTACGTGGAGAAATACA
AGCACCTGCAGTACATTGAAAACGCGATGGGCGAGGCAGGCATCCCGGTA
GACCTGTCGATGGTCTCTCCCTCTGCCTCCCTGCAGCAAGATTACGCCGA
ATTCAAACAGCCAGACCTCAACGGCGACGACAAGATCTCGAGGCGGGAGT
TCGACCAGTACATGCGTCAATACCTAGCAGCCAACCCCGAGTACAGCAAA
TATGACTACCCTTCTTTCGATGAGTTTGACAAGGACGGGGATAATTCCAT
TACCTTCGCGGAGTGGCAGCAGTACATCCAAGATGCTGAGGCGGCGGCAC
TGGCCCAAGAACAGCTCATGTACCAGCAGCAGCAAAAGGGGAAAGCAACT
GGGCGGCGAAAGTAA
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protein sequence of NO09G02360.1

>NO09G02360.1-protein ID=NO09G02360.1-protein|Name=NO09G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MAGKGFNQWSTARRLVLVAIMLLMENVIGQQQQQLHRYPGPGGPPPRRRP
PGPNAIELGKENKRATYMAVVGGILAGYWFSGWNFRGKNKKLKQKYERDI
AQQERRIEDAIRSIRQQYEEVLEKKQEEYVEKYKHLQYIENAMGEAGIPV
DLSMVSPSASLQQDYAEFKQPDLNGDDKISRREFDQYMRQYLAANPEYSK
YDYPSFDEFDKDGDNSITFAEWQQYIQDAEAAALAQEQLMYQQQQKGKAT
GRRK*
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mRNA from alignment at chr9:709606..711366+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02360.1 ID=NO09G02360.1|Name=NO09G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at chr9:709606..711366+ (Nannochloropsis oceanica)
ATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTGTCTT
GGTAGCCATCATGCTACTCATGGAGGTGTGTGGGCGTGCATGGATGGGAG
GAGGCCAGCTTTTGGGAAGGGCAGGCTGGACTAGAGTTCAGGCATCATCA
TCCATCTAATCTGTTTTAACGTCAACCTGATACAATAGAATGTGATAGGG
CAACAACAACAGCAGCTGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCC
ACGAAGGCGACCACCGGGACCCAACGCCATCGAGCTGGGAAAGGAGAATA
AGTACGTGGGTCGCTTTGATACCCTGTCCAACTTCTGTGCGGCTGTGCCT
AACCCTTGCCCCTTAGTCCCGTTTGAGCCGGGGGGGTCTGATCATTTTGA
TTCATTGTCCTATATCTTGACAGGCGGGCCACATATATGGCCGTAGTAGG
GGGAATTTTGGCGGGGTACTGGTTTTCGGGGTGGAATTTCAGGGGTAAGA
ACAAGAAGCTGAAGCAGAAATACGAGAGGGATATTGCGGTACGTGCCTTT
TCGAGTTTTAATTGGTTTGAACGTTGTAGGATGGAGTCATGGGAGGATGG
ATTGCGACATATGGAGCTTTTTCTGCCACGCACATCGTTTCGTTTTGTTT
GCATGTTTTTGAGATGCCACGCAAAAGATTCTCAATTTCCCCTCACCTCT
CTCCCTTCCTCCCTGCGTCCCTCCCACACACCGATCCCAGCAACAAGAGA
GGCGCATTGAGGACGCCATCCGTTCGATACGGCAACAGTACGAGGAGGTC
CTGGAGAAAAAGCAAGAAGAGTACGTGGAGAAATACAAGCACCTGCAGTA
CATTGAAGTAAGGAAGGAGGAAGGGAGGAGTTAGGGAAGGAGGGATGTAG
GGTATGGCAGCTGACGTGGATCATCATATGGATAAAGTGGGGCACACCTG
CTACATAATACCATACTAATCTGGAAGACACACGCATAAATATGTACACA
GGCATAGACTCACACGCACCCTGTCGTTTTGACTCACCCACCTACCCATT
CACGCACCCACGCACAGAACGCGATGGGCGAGGCAGGCATCCCGGTAGAC
CTGTCGATGGTCTCTCCCTCTGCCTCCCTGCAGCAAGATTACGCCGAATT
CAAACAGCCAGACCTCAACGGCGACGACAAGATCTCGAGGCGGGAGGTAA
GTTGAAAAGAGAGGATAGTAGGGCTTGAGAGAGAGGGAGGTTGCTTCGGC
GTCATTTCCCCCGTGGTTGTCCCTTGACAGTTCGAATGGGTACAGGTCGT
CCGTCTTCTAACCCCTCTCCTTTTTATTTTTGTCATCATGATCATAGTTT
CTTTATATTCCTTTTTATTTTTGGTATTCACCTGTCCCTCCCTCCTTCCC
TCCCTCCTTCCCTCCATCTCCCTAGTTCGACCAGTACATGCGTCAATACC
TAGCAGCCAACCCCGAGTACAGCAAATATGACTACCCTTCTTTCGATGAG
TTTGACAAGGACGGGGATAATTCCATTACCTTCGCGGAGTGGCAGCAGTA
CATCCAAGATGCTGAGGCGGCGGCACGTAGGTGGACTTCAGAAGGGAGGG
AGGAGGATTGAGAGGGGCAGAGGGCAGGGTTTGCAAATAAATGGAGTCTG
GAAGTATTGACTATTCTCATGTCCTTGTTATCCCTACGAACTACAGTGGC
CCAAGAACAGCTCATGTACCAGCAGCAGCAAAAGGGGAAAGCAACTGGGC
GGCGAAAGTAA
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Coding sequence (CDS) from alignment at chr9:709606..711366+

>NO09G02360.1 ID=NO09G02360.1|Name=NO09G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr9:709606..711366+ (Nannochloropsis oceanica)
ATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTGTCTT
GGTAGCCATCATGCTACTCATGGAGAATGTGATAGGGCAACAACAACAGC
AGCTGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCCACGAAGGCGACCA
CCGGGACCCAACGCCATCGAGCTGGGAAAGGAGAATAAGCGGGCCACATA
TATGGCCGTAGTAGGGGGAATTTTGGCGGGGTACTGGTTTTCGGGGTGGA
ATTTCAGGGGTAAGAACAAGAAGCTGAAGCAGAAATACGAGAGGGATATT
GCGCAACAAGAGAGGCGCATTGAGGACGCCATCCGTTCGATACGGCAACA
GTACGAGGAGGTCCTGGAGAAAAAGCAAGAAGAGTACGTGGAGAAATACA
AGCACCTGCAGTACATTGAAAACGCGATGGGCGAGGCAGGCATCCCGGTA
GACCTGTCGATGGTCTCTCCCTCTGCCTCCCTGCAGCAAGATTACGCCGA
ATTCAAACAGCCAGACCTCAACGGCGACGACAAGATCTCGAGGCGGGAGT
TCGACCAGTACATGCGTCAATACCTAGCAGCCAACCCCGAGTACAGCAAA
TATGACTACCCTTCTTTCGATGAGTTTGACAAGGACGGGGATAATTCCAT
TACCTTCGCGGAGTGGCAGCAGTACATCCAAGATGCTGAGGCGGCGGCAC
TGGCCCAAGAACAGCTCATGTACCAGCAGCAGCAAAAGGGGAAAGCAACT
GGGCGGCGAAAGTAA
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Synonyms
Publications