NO09G02230, NO09G02230 (gene) Nannochloropsis oceanica

Overview
NameNO09G02230
Unique NameNO09G02230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1951
Alignment locationchr9:675664..677614 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:675664..677614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO09G02230 vs. NCBI_GenBank
Match: EWM27543.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 271.6 bits (693), Expect = 5.900e-69
Identity = 158/280 (56.43%), Postives = 190/280 (67.86%), Query Frame = 0 
Query:  125 AAVPFRRPQTYNDNDLFRSLQLMDFESAQALLDYDPELMVSRDEDFAQPLAVAVEARFEKNVKYLLHLGCPLQEVDGRGFSALHIAVEAFRDMPFLLRYLLQYKGLDINSRVPPLHGVCPLHLAEDERVLKLLLGCGADPSMLVPVQVGRRRKDGEEGKEEEEDVLGRVERTWPRGKGKKKARFLLTRLSPYQSYTLAKLRFITHMYC------------------SCRFSSSSSFL------QSSILTAR--AKIIDARLDEDSELLDLQKEDKNEEEA 379
            A VP RRP+ YNDNDLFRSLQLMDFES QALL++D EL+ +RDEDFAQPLAVAVEARFE+ VK+LLHL CPL EVDGRG+SALH+AVE F DMPFLLRYLLQ+ G+DIN+R PP  G CPLHLA   R L+LLL CGADP+  VP Q     ++G EG     +VL  VERTWP+ + K KARF+L  LSPY S+ +AKL FI+ MY                   S RF  S S +       S  LT R  A I +ARLD  +E ++  K+D++ +EA
Sbjct:  104 AVVPIRRPKIYNDNDLFRSLQLMDFESVQALLEHDRELVSARDEDFAQPLAVAVEARFERGVKFLLHLKCPLLEVDGRGYSALHLAVEVFADMPFLLRYLLQHGGMDINARAPPSLGPCPLHLASGTRALRLLLACGADPT--VPAQ---NEREGSEG----GNVLAWVERTWPQTREKTKARFMLACLSPYHSFVVAKLCFISRMYAVPGAPGAAPAANPCTGARSARFPPSPSLVAVQARPPSHSLTHRIGAMIANARLDGQTEEVNPLKDDEHSDEA 374
The following BLAST results are available for this feature:
BLAST of NO09G02230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27543.15.900e-6956.43Ankyrin repeat-containing protein [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010740NSK010740Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02230.1NO09G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670712gene_4326Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g49gene2991Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02230.1NO09G02230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02230 ID=NO09G02230|Name=NO09G02230|organism=Nannochloropsis oceanica|type=gene|length=1951bp
CGACAGGCGTGACGGGATCAGCCCCTTCACCATGATCTCCCCTCCACTCT
GCGTCTGATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCG
CATTGCTGTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGAT
GACGACGATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGA
TCATCATCATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGG
GGTCCTCGCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAG
GAGGAGGAAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGC
TTGCGTCAAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAA
ATACCACCACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGG
CCCCAAACCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGA
CTTTGAAAGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCT
CTAGAGACGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGT
TTTGAAAAAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGA
AGTCGACGGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTA
GAGACATGCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGAC
ATCAATTCGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGC
CGAGGACGAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTT
CCATGCTGGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAG
GGCAAGGAAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCC
TCGGGGGAAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGC
CGTACCAAAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTAT
TGTTCCTGCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCT
CACGGCTAGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGT
TGCTGGACCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGG
TGCAAAGAAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACA
TCTGTACCTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCC
TGGCCGCTGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCA
CGGTCTCCCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGG
TAATGGAGAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGT
GCCCACTTTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGT
AAGTATAAGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAA
TGGCAGCAATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCG
GTAGGATGGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTC
GACATTCATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGA
GGGCGGGAAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATG
AGGTGAGGGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACT
GGGATGGGGAAGAAAGTATGAAAGTGTCAGGGTGTTTTTTAAGGTGTGCG
GAGGCAGACAGGCGGAAGACAATGAGAAACGGGACATGGGAAGATATGTA
ATCGATGTACAGAGAAGTGTTTGTAAACTGAACAAAGAAAGCTGATGGGT
C
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protein sequence of NO09G02230.1

>NO09G02230.1-protein ID=NO09G02230.1-protein|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MEPPHSKRPLSAQTALLSPKRQCQYTQGQDDDDDDIGFLAKLLREEEDHH
HHQQQQQQVEEEEEGSSHLDKPQGAQKEDDEEEEGNTSTSHDPALKIACV
KSILYEPQQEGEHENTTTAASASLAAVPFRRPQTYNDNDLFRSLQLMDFE
SAQALLDYDPELMVSRDEDFAQPLAVAVEARFEKNVKYLLHLGCPLQEVD
GRGFSALHIAVEAFRDMPFLLRYLLQYKGLDINSRVPPLHGVCPLHLAED
ERVLKLLLGCGADPSMLVPVQVGRRRKDGEEGKEEEEDVLGRVERTWPRG
KGKKKARFLLTRLSPYQSYTLAKLRFITHMYCSCRFSSSSSFLQSSILTA
RAKIIDARLDEDSELLDLQKEDKNEEEADIWCKEEVKGQVFSFVENGHLY
LARNRSTGLDHPPPLAAVAVAAAASGSSSPSRSPPRPAAAAAVGGSNGNG
EKKGRPIPPHPAGLCPLSVLKAARADFFLVSKYKEEYEGEGKMAAYDNGS
NSSSSVSNSSRSSSGRMDGGKWVLLPALPRVDIHWREPNGGKENEGGEGG
KSGMAAAVLQMLVHEVRDEGVVDALQAMLWTGMGKKV*
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Synonyms
Publications